Wall clock time and date at job start Mon Mar 30 2020 06:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46897 * 109.47554 * 2 1 4 4 C 1.46895 * 110.99904 * 293.95739 * 3 2 1 5 5 C 1.46895 * 111.00169 * 169.99802 * 3 2 1 6 6 C 1.53002 * 109.47025 * 190.00339 * 5 3 2 7 7 H 1.08999 * 109.47013 * 304.99807 * 6 5 3 8 8 O 1.42899 * 109.47536 * 64.99989 * 6 5 3 9 9 C 1.53002 * 109.47245 * 185.00171 * 6 5 3 10 10 N 1.46899 * 109.47463 * 179.97438 * 9 6 5 11 11 C 1.46895 * 110.99989 * 190.00067 * 10 9 6 12 12 C 1.53241 * 109.33538 * 187.25118 * 11 10 9 13 13 N 1.47082 * 108.52509 * 306.16899 * 12 11 10 14 14 C 1.36935 * 120.87800 * 231.18634 * 13 12 11 15 15 H 1.07994 * 120.00243 * 27.12925 * 14 13 12 16 16 C 1.38815 * 119.99552 * 206.84012 * 14 13 12 17 17 N 1.31614 * 119.99986 * 17.18837 * 16 14 13 18 18 Si 1.86797 * 120.00057 * 197.17547 * 16 14 13 19 19 H 1.48508 * 109.47149 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47196 * 120.00464 * 18 16 14 21 21 H 1.48497 * 109.47565 * 240.00842 * 18 16 14 22 22 C 1.47072 * 118.23374 * 51.45730 * 13 12 11 23 23 C 1.46908 * 110.99894 * 314.30155 * 10 9 6 24 24 H 1.08998 * 109.47234 * 60.00001 * 1 2 3 25 25 H 1.09008 * 109.47414 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47326 * 300.00298 * 1 2 3 27 27 H 1.09005 * 109.47038 * 239.99564 * 2 1 3 28 28 H 1.09007 * 109.47195 * 120.00174 * 2 1 3 29 29 H 1.09006 * 109.46789 * 296.04289 * 4 3 2 30 30 H 1.08998 * 109.47434 * 56.04077 * 4 3 2 31 31 H 1.09001 * 109.47434 * 176.04530 * 4 3 2 32 32 H 1.08994 * 109.47371 * 70.00326 * 5 3 2 33 33 H 1.09003 * 109.47336 * 310.00110 * 5 3 2 34 34 H 0.96695 * 114.00089 * 59.99884 * 8 6 5 35 35 H 1.09004 * 109.46850 * 59.99454 * 9 6 5 36 36 H 1.08999 * 109.46818 * 299.99756 * 9 6 5 37 37 H 1.08994 * 109.49506 * 67.29451 * 11 10 9 38 38 H 1.08997 * 109.49438 * 307.21030 * 11 10 9 39 39 H 1.09003 * 109.62622 * 186.45689 * 12 11 10 40 40 H 1.09001 * 109.79122 * 65.97420 * 12 11 10 41 41 H 0.97002 * 120.00194 * 180.02562 * 17 16 14 42 42 H 1.09000 * 109.62781 * 68.25550 * 22 13 12 43 43 H 1.09007 * 109.62956 * 188.83247 * 22 13 12 44 44 H 1.09005 * 109.49135 * 292.70628 * 23 10 9 45 45 H 1.09003 * 109.49306 * 52.75396 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6702 2.0669 -1.2532 5 6 3.4685 1.4310 0.2382 6 6 3.8999 2.8790 0.4792 7 1 3.5771 3.4984 -0.3576 8 8 3.3030 3.3595 1.6854 9 6 5.4235 2.9433 0.6033 10 7 5.8378 4.3337 0.8341 11 6 7.2958 4.4739 0.7229 12 6 7.7032 5.8893 1.1460 13 7 6.9235 6.8553 0.3572 14 6 7.5419 7.8760 -0.3143 15 1 8.5631 7.7631 -0.6468 16 6 6.8540 9.0537 -0.5728 17 7 5.7564 9.3353 0.0967 18 14 7.4863 10.2390 -1.8708 19 1 8.7283 9.6941 -2.4758 20 1 6.4566 10.4121 -2.9267 21 1 7.7765 11.5527 -1.2423 22 6 5.4617 6.6995 0.3139 23 6 5.1431 5.2489 -0.0812 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 2.1770 1.5789 -2.0859 30 1 0.5920 2.0179 -1.4051 31 1 1.9824 3.1098 -1.1988 32 1 3.9925 1.0358 -0.6320 33 1 3.7121 0.8288 1.1135 34 1 3.5466 2.8543 2.4731 35 1 5.8787 2.5768 -0.3168 36 1 5.7463 2.3240 1.4402 37 1 7.6002 4.3011 -0.3093 38 1 7.7818 3.7460 1.3726 39 1 8.7667 6.0360 0.9573 40 1 7.4965 6.0312 2.2068 41 1 5.2755 10.1581 -0.0842 42 1 5.0412 6.9156 1.2960 43 1 5.0425 7.3822 -0.4253 44 1 5.4774 5.0652 -1.1024 45 1 4.0678 5.0826 -0.0152 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383737740.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:08 Heat of formation + Delta-G solvation = -31.514355 kcal Electronic energy + Delta-G solvation = -22109.425147 eV Core-core repulsion = 18969.024696 eV Total energy + Delta-G solvation = -3140.400451 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.200 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.33094 -38.97671 -37.29343 -35.77327 -33.34989 -32.24842 -31.62700 -30.35885 -28.57098 -27.31702 -25.52475 -24.47349 -23.82648 -22.03009 -21.71023 -20.78003 -18.74924 -17.62308 -17.14726 -16.89380 -16.49860 -16.15098 -15.95492 -15.72919 -15.48024 -15.28744 -14.82306 -14.76637 -14.58449 -14.21678 -13.86584 -13.26451 -13.08673 -12.99145 -12.84097 -12.72870 -12.62533 -12.54275 -12.36495 -12.29673 -12.07813 -12.00229 -11.83798 -11.75453 -11.45383 -11.26171 -10.70739 -10.58212 -9.24014 -9.19362 -8.68465 -7.87666 -5.33354 1.45249 1.46236 1.57582 2.49989 2.74732 3.12061 3.27269 3.68029 3.71572 3.79244 4.09624 4.11901 4.16203 4.28080 4.31688 4.34768 4.43877 4.54228 4.55428 4.56792 4.63103 4.64913 4.67823 4.73780 4.79104 4.89705 4.92061 5.01640 5.05584 5.12138 5.17862 5.20922 5.36503 5.37415 5.60292 5.67862 6.05946 6.14044 6.20266 6.31002 6.37209 7.07789 7.12152 7.83155 8.38229 9.19087 Molecular weight = 271.20amu Principal moments of inertia in cm(-1) A = 0.029448 B = 0.003895 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.615181 B = 7187.685926 C = 7692.510486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.050 3.950 3 N -0.548 5.548 4 C 0.019 3.981 5 C 0.033 3.967 6 C 0.115 3.885 7 H 0.079 0.921 8 O -0.555 6.555 9 C 0.027 3.973 10 N -0.532 5.532 11 C 0.055 3.945 12 C 0.143 3.857 13 N -0.615 5.615 14 C -0.265 4.265 15 H 0.068 0.932 16 C -0.054 4.054 17 N -0.936 5.936 18 Si 0.970 3.030 19 H -0.266 1.266 20 H -0.289 1.289 21 H -0.291 1.291 22 C 0.190 3.810 23 C 0.053 3.947 24 H 0.052 0.948 25 H 0.073 0.927 26 H 0.054 0.946 27 H 0.034 0.966 28 H 0.081 0.919 29 H 0.029 0.971 30 H 0.077 0.923 31 H 0.055 0.945 32 H 0.045 0.955 33 H 0.095 0.905 34 H 0.381 0.619 35 H 0.040 0.960 36 H 0.097 0.903 37 H 0.022 0.978 38 H 0.097 0.903 39 H 0.061 0.939 40 H 0.014 0.986 41 H 0.250 0.750 42 H -0.006 1.006 43 H 0.053 0.947 44 H 0.013 0.987 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.936 -21.517 -0.788 22.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.078 4.078 3 N -0.272 5.272 4 C -0.129 4.129 5 C -0.096 4.096 6 C 0.055 3.945 7 H 0.097 0.903 8 O -0.361 6.361 9 C -0.102 4.102 10 N -0.257 5.257 11 C -0.074 4.074 12 C 0.017 3.983 13 N -0.340 5.340 14 C -0.395 4.395 15 H 0.086 0.914 16 C -0.249 4.249 17 N -0.582 5.582 18 Si 0.798 3.202 19 H -0.190 1.190 20 H -0.216 1.216 21 H -0.218 1.218 22 C 0.064 3.936 23 C -0.076 4.076 24 H 0.071 0.929 25 H 0.092 0.908 26 H 0.073 0.927 27 H 0.053 0.947 28 H 0.100 0.900 29 H 0.047 0.953 30 H 0.096 0.904 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.114 0.886 34 H 0.229 0.771 35 H 0.058 0.942 36 H 0.116 0.884 37 H 0.040 0.960 38 H 0.115 0.885 39 H 0.079 0.921 40 H 0.032 0.968 41 H 0.059 0.941 42 H 0.012 0.988 43 H 0.071 0.929 44 H 0.031 0.969 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.629 -20.586 -0.351 21.630 hybrid contribution 1.045 0.170 -1.680 1.985 sum -5.584 -20.417 -2.030 21.264 Atomic orbital electron populations 1.21783 0.94372 1.02219 1.02033 1.22157 0.96657 0.87862 1.01098 1.61909 1.13546 1.16645 1.35123 1.22462 1.02016 0.98869 0.89565 1.22752 0.88010 0.96783 1.02026 1.21909 0.90095 0.94001 0.88488 0.90291 1.86624 1.72648 1.59692 1.17133 1.22884 0.96211 0.89703 1.01354 1.61873 1.05968 1.05102 1.52726 1.22485 0.87897 0.97971 0.99069 1.21136 0.94957 0.88762 0.93399 1.44458 1.02695 1.30638 1.56176 1.19579 0.98565 0.92984 1.28364 0.91384 1.25853 0.98911 0.98439 1.01716 1.70216 1.20772 1.25296 1.41926 0.85164 0.77866 0.78392 0.78753 1.19001 1.21603 1.21786 1.20642 0.83692 0.92095 0.97215 1.22653 0.98353 0.94159 0.92426 0.92933 0.90833 0.92698 0.94743 0.90049 0.95284 0.90409 0.92614 0.93654 0.88648 0.77074 0.94207 0.88448 0.95987 0.88495 0.92090 0.96761 0.94080 0.98800 0.92891 0.96887 0.90382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.84 71.98 0.71 -1.34 16 2 C 0.05 0.76 5.68 86.30 0.49 1.25 16 3 N -0.55 -10.91 4.71 -922.48 -4.35 -15.25 16 4 C 0.02 0.38 9.13 127.69 1.17 1.55 16 5 C 0.03 0.61 4.60 86.31 0.40 1.01 16 6 C 0.12 2.81 2.21 30.60 0.07 2.88 16 7 H 0.08 2.30 4.37 -2.39 -0.01 2.29 16 8 O -0.56 -15.58 12.96 -148.98 -1.93 -17.51 16 9 C 0.03 0.67 4.93 86.30 0.43 1.10 16 10 N -0.53 -18.57 4.64 -894.31 -4.15 -22.73 16 11 C 0.05 1.91 5.58 86.38 0.48 2.39 16 12 C 0.14 6.25 6.69 86.35 0.58 6.82 16 13 N -0.62 -32.88 3.03 -697.26 -2.11 -35.00 16 14 C -0.26 -15.17 9.63 84.03 0.81 -14.36 16 15 H 0.07 3.77 7.88 -2.91 -0.02 3.75 16 16 C -0.05 -3.13 4.93 84.86 0.42 -2.71 16 17 N -0.94 -57.65 11.16 21.65 0.24 -57.41 16 18 Si 0.97 46.04 29.59 68.60 2.03 48.07 16 19 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 20 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 21 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 22 C 0.19 9.95 5.45 86.50 0.47 10.42 16 23 C 0.05 2.20 5.06 86.53 0.44 2.64 16 24 H 0.05 0.75 6.47 -2.39 -0.02 0.74 16 25 H 0.07 0.77 8.14 -2.38 -0.02 0.76 16 26 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.03 0.49 8.12 -2.38 -0.02 0.48 16 28 H 0.08 1.09 7.93 -2.38 -0.02 1.07 16 29 H 0.03 0.53 8.14 -2.38 -0.02 0.51 16 30 H 0.08 1.42 6.30 -2.39 -0.02 1.41 16 31 H 0.06 1.32 6.37 -2.39 -0.02 1.31 16 32 H 0.05 0.79 8.12 -2.39 -0.02 0.77 16 33 H 0.10 1.42 7.93 -2.39 -0.02 1.40 16 34 H 0.38 7.92 9.05 -74.06 -0.67 7.25 16 35 H 0.04 0.96 8.08 -2.38 -0.02 0.94 16 36 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.10 2.68 8.11 -2.39 -0.02 2.66 16 39 H 0.06 2.52 7.95 -2.39 -0.02 2.50 16 40 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 42 H -0.01 -0.36 8.14 -2.39 -0.02 -0.37 16 43 H 0.05 3.10 6.12 -2.38 -0.01 3.08 16 44 H 0.01 0.55 8.14 -2.38 -0.02 0.53 16 45 H 0.08 3.10 5.58 -2.39 -0.01 3.08 16 Total: -1.00 -69.39 342.98 -3.54 -72.92 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: 0.28 Total: 15.25 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: 6.45 Total: 11.65 kcal Atomic # 7 Polarization: -120.02 SS G_CDS: -10.37 Total: -130.39 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: -1.93 Total: -17.51 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -69.39 -3.54 -72.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383737740.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.408 kcal (2) G-P(sol) polarization free energy of solvation -69.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds