Wall clock time and date at job start Mon Mar 30 2020 06:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46905 * 109.47267 * 2 1 4 4 C 1.46897 * 110.99955 * 66.04179 * 3 2 1 5 5 C 1.46904 * 110.99804 * 189.99996 * 3 2 1 6 6 C 1.53000 * 109.46618 * 169.99776 * 5 3 2 7 7 H 1.08998 * 109.47286 * 60.00311 * 6 5 3 8 8 O 1.42895 * 109.47516 * 299.99628 * 6 5 3 9 9 C 1.52999 * 109.46751 * 179.97438 * 6 5 3 10 10 N 1.46903 * 109.47054 * 184.10834 * 9 6 5 11 11 C 1.46894 * 111.00209 * 283.47713 * 10 9 6 12 12 C 1.53237 * 109.34334 * 187.25050 * 11 10 9 13 13 N 1.47079 * 108.52146 * 306.17831 * 12 11 10 14 14 C 1.36938 * 120.87883 * 231.18203 * 13 12 11 15 15 H 1.08003 * 120.00115 * 32.70729 * 14 13 12 16 16 C 1.38806 * 119.99784 * 212.43745 * 14 13 12 17 17 N 1.31619 * 120.00630 * 12.44052 * 16 14 13 18 18 Si 1.86805 * 119.99699 * 192.44445 * 16 14 13 19 19 H 1.48506 * 109.47079 * 359.97438 * 18 16 14 20 20 H 1.48507 * 109.47234 * 119.99517 * 18 16 14 21 21 H 1.48495 * 109.47400 * 239.99608 * 18 16 14 22 22 C 1.47078 * 118.23837 * 51.45363 * 13 12 11 23 23 C 1.46897 * 110.99748 * 47.78480 * 10 9 6 24 24 H 1.08999 * 109.47418 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47026 * 300.00320 * 1 2 3 26 26 H 1.09007 * 109.46571 * 60.00210 * 1 2 3 27 27 H 1.09001 * 109.47026 * 239.99680 * 2 1 3 28 28 H 1.09004 * 109.47033 * 119.99583 * 2 1 3 29 29 H 1.09004 * 109.46983 * 183.95332 * 4 3 2 30 30 H 1.08999 * 109.47364 * 303.95392 * 4 3 2 31 31 H 1.08998 * 109.46745 * 63.95538 * 4 3 2 32 32 H 1.08998 * 109.47038 * 49.99936 * 5 3 2 33 33 H 1.08995 * 109.46846 * 289.99565 * 5 3 2 34 34 H 0.96706 * 114.00073 * 300.01020 * 8 6 5 35 35 H 1.09007 * 109.47490 * 64.11016 * 9 6 5 36 36 H 1.09004 * 109.47520 * 304.11037 * 9 6 5 37 37 H 1.09004 * 109.48906 * 67.29638 * 11 10 9 38 38 H 1.09002 * 109.49705 * 307.21924 * 11 10 9 39 39 H 1.08995 * 109.63123 * 186.46297 * 12 11 10 40 40 H 1.09004 * 109.62225 * 65.88270 * 12 11 10 41 41 H 0.96994 * 120.00358 * 180.02562 * 17 16 14 42 42 H 1.08997 * 109.62779 * 68.25169 * 22 13 12 43 43 H 1.09003 * 109.62488 * 188.83244 * 22 13 12 44 44 H 1.09002 * 109.49041 * 292.70064 * 23 10 9 45 45 H 1.08993 * 109.49536 * 52.75928 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6702 2.0670 1.2532 5 6 3.4686 1.4311 -0.2382 6 6 3.8999 2.8791 -0.4792 7 1 3.6563 3.4813 0.3961 8 8 3.2131 3.3972 -1.6201 9 6 5.4090 2.9272 -0.7266 10 7 5.8390 4.3255 -0.8603 11 6 5.4781 4.8635 -2.1787 12 6 6.0989 6.2544 -2.3465 13 7 5.6955 7.0871 -1.2032 14 6 5.1439 8.3256 -1.3958 15 1 4.5274 8.5134 -2.2625 16 6 5.3725 9.3380 -0.4741 17 7 6.3037 9.1937 0.4447 18 14 4.3582 10.9055 -0.5379 19 1 3.3848 10.8201 -1.6562 20 1 3.6270 11.0745 0.7436 21 1 5.2568 12.0682 -0.7521 22 6 5.9058 6.5569 0.1524 23 6 5.2872 5.1516 0.2218 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8901 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8901 29 1 1.9824 3.1099 1.1987 30 1 0.5919 2.0180 1.4051 31 1 2.1769 1.5791 2.0859 32 1 3.7123 0.8289 -1.1134 33 1 3.9925 1.0359 0.6321 34 1 3.3836 2.9088 -2.4371 35 1 5.6445 2.3855 -1.6427 36 1 5.9297 2.4656 0.1125 37 1 4.3934 4.9375 -2.2567 38 1 5.8548 4.2006 -2.9576 39 1 5.7417 6.7055 -3.2722 40 1 7.1853 6.1697 -2.3725 41 1 6.4631 9.9011 1.0890 42 1 6.9740 6.5007 0.3620 43 1 5.4209 7.2082 0.8796 44 1 4.2051 5.2216 0.1102 45 1 5.5250 4.6975 1.1836 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383737750.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:12 Heat of formation + Delta-G solvation = -8.893711 kcal Electronic energy + Delta-G solvation = -22389.332535 eV Core-core repulsion = 19249.912989 eV Total energy + Delta-G solvation = -3139.419546 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.200 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.32834 -37.68031 -36.00719 -33.94086 -31.78575 -31.09145 -29.79156 -29.19567 -27.26123 -25.94583 -23.99633 -22.71356 -22.30305 -21.16475 -20.92912 -18.89077 -16.86057 -16.34277 -16.13046 -15.71866 -15.22997 -14.76248 -14.73935 -14.22452 -14.06822 -13.80850 -13.53272 -13.27177 -13.08262 -12.83080 -12.37256 -12.18745 -11.95934 -11.73821 -11.62168 -11.44937 -11.16037 -11.09609 -10.99128 -10.75868 -10.70967 -10.56531 -10.26896 -10.00411 -9.81473 -9.70044 -9.47442 -8.45356 -8.42400 -7.51594 -6.47549 -5.70385 -3.17231 3.41682 3.49093 3.52037 3.67369 4.47621 4.56210 4.60352 4.68238 4.84773 4.96284 5.09292 5.16672 5.27851 5.29403 5.39535 5.43852 5.48448 5.51565 5.55762 5.57589 5.72282 5.84536 5.90896 6.01035 6.05166 6.08032 6.14969 6.31940 6.47945 6.50748 6.67485 6.80137 6.87313 6.90681 7.08555 7.34823 7.68049 7.73732 7.81438 7.86217 7.91627 8.55922 9.30842 9.92659 10.54837 11.38152 Molecular weight = 271.20amu Principal moments of inertia in cm(-1) A = 0.024999 B = 0.004308 C = 0.004005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.792883 B = 6497.244294 C = 6989.018559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.050 3.950 3 N -0.531 5.531 4 C 0.020 3.980 5 C 0.025 3.975 6 C 0.074 3.926 7 H 0.102 0.898 8 O -0.537 6.537 9 C 0.023 3.977 10 N -0.524 5.524 11 C 0.032 3.968 12 C 0.148 3.852 13 N -0.593 5.593 14 C -0.250 4.250 15 H 0.063 0.937 16 C 0.004 3.996 17 N -0.904 5.904 18 Si 0.902 3.098 19 H -0.277 1.277 20 H -0.290 1.290 21 H -0.290 1.290 22 C 0.183 3.817 23 C 0.031 3.969 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.029 0.971 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.022 0.978 32 H 0.074 0.926 33 H 0.039 0.961 34 H 0.365 0.635 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.059 0.941 38 H 0.052 0.948 39 H 0.053 0.947 40 H 0.020 0.980 41 H 0.252 0.748 42 H 0.025 0.975 43 H 0.080 0.920 44 H 0.035 0.965 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.845 -18.964 -0.318 20.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.078 4.078 3 N -0.256 5.256 4 C -0.128 4.128 5 C -0.104 4.104 6 C 0.013 3.987 7 H 0.120 0.880 8 O -0.340 6.340 9 C -0.107 4.107 10 N -0.247 5.247 11 C -0.097 4.097 12 C 0.022 3.978 13 N -0.316 5.316 14 C -0.380 4.380 15 H 0.081 0.919 16 C -0.195 4.195 17 N -0.549 5.549 18 Si 0.732 3.268 19 H -0.202 1.202 20 H -0.216 1.216 21 H -0.217 1.217 22 C 0.057 3.943 23 C -0.098 4.098 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.083 0.917 27 H 0.089 0.911 28 H 0.047 0.953 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.040 0.960 32 H 0.093 0.907 33 H 0.057 0.943 34 H 0.211 0.789 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.037 0.963 41 H 0.062 0.938 42 H 0.043 0.957 43 H 0.099 0.901 44 H 0.053 0.947 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.731 -18.117 -0.109 19.327 hybrid contribution -0.645 -0.172 0.398 0.777 sum -7.376 -18.289 0.290 19.722 Atomic orbital electron populations 1.21800 0.94869 1.01286 1.02686 1.22099 0.96253 0.89129 1.00355 1.61950 1.13397 1.15121 1.35096 1.22474 1.01393 0.99817 0.89135 1.22882 0.87951 0.98760 1.00836 1.22791 0.92462 0.92718 0.90706 0.88016 1.86695 1.71873 1.57354 1.18120 1.22899 0.92929 0.92844 1.02001 1.62245 1.58431 1.00098 1.03922 1.22838 1.00330 0.97419 0.89076 1.20997 0.96095 0.89155 0.91574 1.44025 1.71834 1.15738 1.00030 1.19203 1.22907 0.86802 1.09045 0.91949 1.25174 0.97221 0.97397 0.99673 1.70006 1.31704 1.33377 1.19799 0.86231 0.79684 0.83453 0.77469 1.20232 1.21635 1.21710 1.20859 0.97300 0.88244 0.87944 1.23011 0.97577 0.97047 0.92206 0.92514 0.92645 0.91723 0.91063 0.95321 0.90823 0.91196 0.95954 0.90746 0.94260 0.78860 0.91300 0.90777 0.92246 0.92979 0.92857 0.96250 0.93764 0.95718 0.90149 0.94652 0.92848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.84 37.16 0.37 -0.86 16 2 C 0.05 0.45 5.68 -3.82 -0.02 0.43 16 3 N -0.53 -5.92 4.63 -242.91 -1.12 -7.04 16 4 C 0.02 0.22 9.13 60.06 0.55 0.77 16 5 C 0.02 0.26 4.62 -3.82 -0.02 0.24 16 6 C 0.07 0.97 2.25 -26.73 -0.06 0.91 16 7 H 0.10 1.54 4.62 -51.93 -0.24 1.30 16 8 O -0.54 -7.83 10.38 -35.23 -0.37 -8.19 16 9 C 0.02 0.31 5.28 -3.82 -0.02 0.29 16 10 N -0.52 -9.42 4.83 -234.02 -1.13 -10.55 16 11 C 0.03 0.60 5.09 -3.70 -0.02 0.58 16 12 C 0.15 3.32 6.69 -3.60 -0.02 3.30 16 13 N -0.59 -15.64 3.01 -171.74 -0.52 -16.15 16 14 C -0.25 -7.13 9.59 -15.06 -0.14 -7.27 16 15 H 0.06 1.76 7.86 -52.48 -0.41 1.35 16 16 C 0.00 0.11 5.01 -17.43 -0.09 0.02 16 17 N -0.90 -26.95 11.29 55.49 0.63 -26.33 16 18 Si 0.90 22.26 29.57 -169.99 -5.03 17.23 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 21 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 22 C 0.18 4.57 5.38 -3.36 -0.02 4.55 16 23 C 0.03 0.62 4.57 -3.46 -0.02 0.60 16 24 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.05 0.46 6.47 -51.93 -0.34 0.12 16 26 H 0.06 0.59 8.14 -51.92 -0.42 0.16 16 27 H 0.07 0.60 7.93 -51.93 -0.41 0.19 16 28 H 0.03 0.25 8.12 -51.93 -0.42 -0.17 16 29 H 0.07 0.93 6.47 -51.93 -0.34 0.59 16 30 H 0.07 0.71 6.30 -51.93 -0.33 0.38 16 31 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 32 H 0.07 0.70 7.93 -51.93 -0.41 0.29 16 33 H 0.04 0.40 8.12 -51.93 -0.42 -0.02 16 34 H 0.37 4.15 9.05 45.56 0.41 4.56 16 35 H 0.07 0.82 7.84 -51.92 -0.41 0.41 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.06 1.16 5.80 -51.93 -0.30 0.86 16 38 H 0.05 0.83 7.92 -51.93 -0.41 0.41 16 39 H 0.05 1.15 7.95 -51.93 -0.41 0.74 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 42 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.08 2.21 6.41 -51.93 -0.33 1.88 16 44 H 0.04 0.75 6.60 -51.93 -0.34 0.41 16 45 H 0.05 0.97 8.11 -51.93 -0.42 0.55 16 LS Contribution 338.84 15.07 5.11 5.11 Total: -1.00 -31.57 338.84 -9.15 -40.73 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -7.21 Total: 1.64 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: 0.49 Total: 3.57 kcal Atomic # 7 Polarization: -57.93 SS G_CDS: -2.14 Total: -60.07 kcal Atomic # 8 Polarization: -7.83 SS G_CDS: -0.37 Total: -8.19 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.03 Total: 17.23 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.57 -9.15 -40.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383737750.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.832 kcal (2) G-P(sol) polarization free energy of solvation -31.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds