Wall clock time and date at job start Mon Mar 30 2020 06:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46905 * 109.47267 * 2 1 4 4 C 1.46897 * 110.99955 * 66.04179 * 3 2 1 5 5 C 1.46904 * 110.99804 * 189.99996 * 3 2 1 6 6 C 1.53000 * 109.46618 * 169.99776 * 5 3 2 7 7 H 1.08998 * 109.47286 * 60.00311 * 6 5 3 8 8 O 1.42895 * 109.47516 * 299.99628 * 6 5 3 9 9 C 1.52999 * 109.46751 * 179.97438 * 6 5 3 10 10 N 1.46903 * 109.47054 * 184.10834 * 9 6 5 11 11 C 1.46894 * 111.00209 * 283.47713 * 10 9 6 12 12 C 1.53237 * 109.34334 * 187.25050 * 11 10 9 13 13 N 1.47079 * 108.52146 * 306.17831 * 12 11 10 14 14 C 1.36938 * 120.87883 * 231.18203 * 13 12 11 15 15 H 1.08003 * 120.00115 * 32.70729 * 14 13 12 16 16 C 1.38806 * 119.99784 * 212.43745 * 14 13 12 17 17 N 1.31619 * 120.00630 * 12.44052 * 16 14 13 18 18 Si 1.86805 * 119.99699 * 192.44445 * 16 14 13 19 19 H 1.48506 * 109.47079 * 359.97438 * 18 16 14 20 20 H 1.48507 * 109.47234 * 119.99517 * 18 16 14 21 21 H 1.48495 * 109.47400 * 239.99608 * 18 16 14 22 22 C 1.47078 * 118.23837 * 51.45363 * 13 12 11 23 23 C 1.46897 * 110.99748 * 47.78480 * 10 9 6 24 24 H 1.08999 * 109.47418 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47026 * 300.00320 * 1 2 3 26 26 H 1.09007 * 109.46571 * 60.00210 * 1 2 3 27 27 H 1.09001 * 109.47026 * 239.99680 * 2 1 3 28 28 H 1.09004 * 109.47033 * 119.99583 * 2 1 3 29 29 H 1.09004 * 109.46983 * 183.95332 * 4 3 2 30 30 H 1.08999 * 109.47364 * 303.95392 * 4 3 2 31 31 H 1.08998 * 109.46745 * 63.95538 * 4 3 2 32 32 H 1.08998 * 109.47038 * 49.99936 * 5 3 2 33 33 H 1.08995 * 109.46846 * 289.99565 * 5 3 2 34 34 H 0.96706 * 114.00073 * 300.01020 * 8 6 5 35 35 H 1.09007 * 109.47490 * 64.11016 * 9 6 5 36 36 H 1.09004 * 109.47520 * 304.11037 * 9 6 5 37 37 H 1.09004 * 109.48906 * 67.29638 * 11 10 9 38 38 H 1.09002 * 109.49705 * 307.21924 * 11 10 9 39 39 H 1.08995 * 109.63123 * 186.46297 * 12 11 10 40 40 H 1.09004 * 109.62225 * 65.88270 * 12 11 10 41 41 H 0.96994 * 120.00358 * 180.02562 * 17 16 14 42 42 H 1.08997 * 109.62779 * 68.25169 * 22 13 12 43 43 H 1.09003 * 109.62488 * 188.83244 * 22 13 12 44 44 H 1.09002 * 109.49041 * 292.70064 * 23 10 9 45 45 H 1.08993 * 109.49536 * 52.75928 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6702 2.0670 1.2532 5 6 3.4686 1.4311 -0.2382 6 6 3.8999 2.8791 -0.4792 7 1 3.6563 3.4813 0.3961 8 8 3.2131 3.3972 -1.6201 9 6 5.4090 2.9272 -0.7266 10 7 5.8390 4.3255 -0.8603 11 6 5.4781 4.8635 -2.1787 12 6 6.0989 6.2544 -2.3465 13 7 5.6955 7.0871 -1.2032 14 6 5.1439 8.3256 -1.3958 15 1 4.5274 8.5134 -2.2625 16 6 5.3725 9.3380 -0.4741 17 7 6.3037 9.1937 0.4447 18 14 4.3582 10.9055 -0.5379 19 1 3.3848 10.8201 -1.6562 20 1 3.6270 11.0745 0.7436 21 1 5.2568 12.0682 -0.7521 22 6 5.9058 6.5569 0.1524 23 6 5.2872 5.1516 0.2218 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8901 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8901 29 1 1.9824 3.1099 1.1987 30 1 0.5919 2.0180 1.4051 31 1 2.1769 1.5791 2.0859 32 1 3.7123 0.8289 -1.1134 33 1 3.9925 1.0359 0.6321 34 1 3.3836 2.9088 -2.4371 35 1 5.6445 2.3855 -1.6427 36 1 5.9297 2.4656 0.1125 37 1 4.3934 4.9375 -2.2567 38 1 5.8548 4.2006 -2.9576 39 1 5.7417 6.7055 -3.2722 40 1 7.1853 6.1697 -2.3725 41 1 6.4631 9.9011 1.0890 42 1 6.9740 6.5007 0.3620 43 1 5.4209 7.2082 0.8796 44 1 4.2051 5.2216 0.1102 45 1 5.5250 4.6975 1.1836 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383737750.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:11 Heat of formation + Delta-G solvation = -33.935831 kcal Electronic energy + Delta-G solvation = -22390.418443 eV Core-core repulsion = 19249.912989 eV Total energy + Delta-G solvation = -3140.505454 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.200 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.53034 -38.86018 -37.28842 -35.60793 -33.37231 -32.26596 -31.55929 -30.35344 -28.54017 -27.24916 -25.50984 -24.30848 -23.80094 -22.37284 -21.74967 -20.62539 -18.68167 -17.58863 -17.18012 -16.79817 -16.55187 -16.11220 -15.92800 -15.79958 -15.49468 -15.16709 -15.02110 -14.72660 -14.54579 -14.18684 -13.50015 -13.23689 -13.09841 -12.95380 -12.83694 -12.67360 -12.59525 -12.56146 -12.36706 -12.26686 -12.03670 -11.92808 -11.79717 -11.69212 -11.54340 -11.39374 -11.05028 -10.59695 -9.25270 -8.95909 -8.54685 -7.86823 -5.38408 1.44945 1.45754 1.57386 2.50124 2.86697 3.13419 3.29155 3.64571 3.73506 3.76884 4.09588 4.12098 4.22127 4.28981 4.36826 4.38892 4.48331 4.53319 4.56431 4.62614 4.68135 4.73627 4.75460 4.80585 4.89470 4.90750 4.97201 4.99991 5.07888 5.10485 5.16089 5.28674 5.35238 5.44983 5.62609 5.68430 6.06661 6.14589 6.24814 6.37229 6.41429 6.97075 7.15200 7.84499 8.41678 9.19205 Molecular weight = 271.20amu Principal moments of inertia in cm(-1) A = 0.024999 B = 0.004308 C = 0.004005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.792883 B = 6497.244294 C = 6989.018559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.050 3.950 3 N -0.548 5.548 4 C 0.022 3.978 5 C 0.033 3.967 6 C 0.082 3.918 7 H 0.076 0.924 8 O -0.559 6.559 9 C 0.027 3.973 10 N -0.535 5.535 11 C 0.048 3.952 12 C 0.142 3.858 13 N -0.613 5.613 14 C -0.265 4.265 15 H 0.061 0.939 16 C -0.048 4.048 17 N -0.936 5.936 18 Si 0.969 3.031 19 H -0.267 1.267 20 H -0.288 1.288 21 H -0.289 1.289 22 C 0.190 3.810 23 C 0.053 3.947 24 H 0.073 0.927 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.081 0.919 28 H 0.034 0.966 29 H 0.051 0.949 30 H 0.074 0.926 31 H 0.030 0.970 32 H 0.094 0.906 33 H 0.047 0.953 34 H 0.379 0.621 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.052 0.948 38 H 0.088 0.912 39 H 0.055 0.945 40 H 0.009 0.991 41 H 0.250 0.750 42 H -0.004 1.004 43 H 0.046 0.954 44 H 0.023 0.977 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.585 -21.156 -1.094 22.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.078 4.078 3 N -0.272 5.272 4 C -0.126 4.126 5 C -0.096 4.096 6 C 0.021 3.979 7 H 0.094 0.906 8 O -0.365 6.365 9 C -0.101 4.101 10 N -0.258 5.258 11 C -0.081 4.081 12 C 0.016 3.984 13 N -0.337 5.337 14 C -0.396 4.396 15 H 0.079 0.921 16 C -0.244 4.244 17 N -0.582 5.582 18 Si 0.797 3.203 19 H -0.191 1.191 20 H -0.215 1.215 21 H -0.215 1.215 22 C 0.064 3.936 23 C -0.076 4.076 24 H 0.092 0.908 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.099 0.901 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.048 0.952 32 H 0.112 0.888 33 H 0.065 0.935 34 H 0.228 0.772 35 H 0.114 0.886 36 H 0.106 0.894 37 H 0.070 0.930 38 H 0.106 0.894 39 H 0.073 0.927 40 H 0.027 0.973 41 H 0.059 0.941 42 H 0.014 0.986 43 H 0.065 0.935 44 H 0.041 0.959 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.476 -20.354 -0.910 21.702 hybrid contribution -0.388 0.463 0.597 0.849 sum -7.864 -19.891 -0.313 21.391 Atomic orbital electron populations 1.21782 0.94496 1.02185 1.01926 1.22156 0.96565 0.87970 1.01083 1.61935 1.13799 1.16474 1.35032 1.22407 1.01804 0.98684 0.89684 1.22766 0.87821 0.96993 1.01988 1.22602 0.91905 0.93875 0.89474 0.90626 1.86664 1.72277 1.58393 1.19195 1.22980 0.93317 0.89812 1.04024 1.62146 1.58805 1.02045 1.02824 1.22632 0.99483 0.95568 0.90423 1.21177 0.95703 0.91119 0.90385 1.44305 1.72101 1.15853 1.01409 1.19510 1.23001 0.87992 1.09076 0.92093 1.25953 0.98373 1.00576 0.99462 1.70166 1.33234 1.34266 1.20501 0.85183 0.78192 0.79372 0.77564 1.19149 1.21510 1.21545 1.20619 0.95428 0.90652 0.86913 1.22591 0.96171 0.94670 0.94193 0.90811 0.93040 0.92814 0.90054 0.94740 0.93012 0.90692 0.95199 0.88817 0.93488 0.77240 0.88607 0.89388 0.93019 0.89368 0.92697 0.97345 0.94055 0.98570 0.93550 0.95914 0.90949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.84 71.98 0.71 -1.40 16 2 C 0.05 0.77 5.68 86.30 0.49 1.26 16 3 N -0.55 -11.05 4.63 -922.43 -4.27 -15.32 16 4 C 0.02 0.47 9.13 127.69 1.17 1.64 16 5 C 0.03 0.60 4.62 86.30 0.40 1.00 16 6 C 0.08 1.97 2.25 30.59 0.07 2.04 16 7 H 0.08 2.24 4.62 -2.39 -0.01 2.22 16 8 O -0.56 -15.24 10.38 -148.98 -1.55 -16.78 16 9 C 0.03 0.65 5.28 86.30 0.46 1.11 16 10 N -0.53 -18.31 4.83 -894.32 -4.32 -22.63 16 11 C 0.05 1.68 5.09 86.38 0.44 2.12 16 12 C 0.14 6.34 6.69 86.35 0.58 6.92 16 13 N -0.61 -33.06 3.01 -697.25 -2.10 -35.15 16 14 C -0.27 -15.47 9.59 84.03 0.81 -14.67 16 15 H 0.06 3.49 7.86 -2.91 -0.02 3.47 16 16 C -0.05 -2.81 5.01 84.86 0.42 -2.38 16 17 N -0.94 -57.57 11.29 21.65 0.24 -57.32 16 18 Si 0.97 46.56 29.57 68.60 2.03 48.58 16 19 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 20 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 21 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 22 C 0.19 9.84 5.38 86.50 0.47 10.30 16 23 C 0.05 2.14 4.57 86.54 0.40 2.53 16 24 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.05 0.77 6.47 -2.39 -0.02 0.76 16 26 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 27 H 0.08 1.10 7.93 -2.39 -0.02 1.08 16 28 H 0.03 0.50 8.12 -2.38 -0.02 0.48 16 29 H 0.05 1.31 6.47 -2.39 -0.02 1.29 16 30 H 0.07 1.45 6.30 -2.39 -0.02 1.44 16 31 H 0.03 0.56 8.14 -2.39 -0.02 0.55 16 32 H 0.09 1.37 7.93 -2.39 -0.02 1.35 16 33 H 0.05 0.80 8.12 -2.39 -0.02 0.78 16 34 H 0.38 7.53 9.05 -74.05 -0.67 6.86 16 35 H 0.10 1.83 7.84 -2.38 -0.02 1.81 16 36 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.05 1.94 5.80 -2.38 -0.01 1.92 16 38 H 0.09 2.48 7.92 -2.39 -0.02 2.46 16 39 H 0.05 2.38 7.95 -2.39 -0.02 2.36 16 40 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 41 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 42 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 43 H 0.05 2.67 6.41 -2.39 -0.02 2.66 16 44 H 0.02 0.98 6.60 -2.39 -0.02 0.96 16 45 H 0.07 2.60 8.11 -2.39 -0.02 2.58 16 Total: -1.00 -69.72 338.84 -3.28 -73.00 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: 0.29 Total: 15.16 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: 6.40 Total: 10.46 kcal Atomic # 7 Polarization: -119.98 SS G_CDS: -10.44 Total: -130.42 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: -1.55 Total: -16.78 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.58 kcal Total: -69.72 -3.28 -73.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383737750.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.061 kcal (2) G-P(sol) polarization free energy of solvation -69.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds