Wall clock time and date at job start Mon Mar 30 2020 06:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42897 * 114.00287 * 2 1 4 4 C 1.52999 * 109.47248 * 175.09880 * 3 2 1 5 5 N 1.46896 * 109.46973 * 66.44937 * 4 3 2 6 6 C 1.46903 * 110.99844 * 196.11402 * 5 4 3 7 7 C 1.50699 * 109.46960 * 66.04765 * 6 5 4 8 8 H 1.08001 * 120.00417 * 0.02562 * 7 6 5 9 9 C 1.37877 * 120.00017 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00239 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 120.00094 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47113 * 359.97438 * 11 9 7 13 13 H 1.48505 * 109.47002 * 120.00101 * 11 9 7 14 14 H 1.48498 * 109.47056 * 239.99852 * 11 9 7 15 15 C 1.46897 * 111.00465 * 72.16452 * 5 4 3 16 16 C 1.52992 * 109.47592 * 200.44193 * 15 5 4 17 17 C 1.53005 * 112.85386 * 53.70072 * 16 15 5 18 18 O 1.42903 * 109.46941 * 294.51376 * 17 16 15 19 19 C 1.42900 * 113.99763 * 185.07394 * 18 17 16 20 20 C 1.53788 * 113.61200 * 282.50645 * 16 15 5 21 21 C 1.53954 * 87.01878 * 220.04574 * 20 16 15 22 22 C 1.53777 * 87.11266 * 25.36298 * 21 20 16 23 23 H 1.08995 * 109.46995 * 64.89281 * 1 2 3 24 24 H 1.09004 * 109.47222 * 184.90160 * 1 2 3 25 25 H 1.09000 * 109.46856 * 304.89791 * 1 2 3 26 26 H 1.09001 * 109.47029 * 55.09463 * 3 2 1 27 27 H 1.09004 * 109.46474 * 295.09425 * 3 2 1 28 28 H 1.08998 * 109.46675 * 306.44762 * 4 3 2 29 29 H 1.08998 * 109.46905 * 186.45087 * 4 3 2 30 30 H 1.09000 * 109.47463 * 186.04385 * 6 5 4 31 31 H 1.09001 * 109.47243 * 306.04544 * 6 5 4 32 32 H 0.97005 * 120.00437 * 180.02562 * 10 9 7 33 33 H 1.09008 * 109.46810 * 320.43652 * 15 5 4 34 34 H 1.09002 * 109.47731 * 80.43294 * 15 5 4 35 35 H 1.09000 * 109.46776 * 54.51184 * 17 16 15 36 36 H 1.08996 * 109.47370 * 174.51204 * 17 16 15 37 37 H 1.08993 * 109.46929 * 184.93549 * 19 18 17 38 38 H 1.09000 * 109.47370 * 304.94042 * 19 18 17 39 39 H 1.09000 * 109.46570 * 64.93418 * 19 18 17 40 40 H 1.08998 * 113.61610 * 334.56784 * 20 16 15 41 41 H 1.09006 * 113.61183 * 105.46942 * 20 16 15 42 42 H 1.09000 * 113.53817 * 270.80646 * 21 20 16 43 43 H 1.09001 * 113.73875 * 139.94313 * 21 20 16 44 44 H 1.08996 * 113.61710 * 220.08816 * 22 21 20 45 45 H 1.09007 * 113.69089 * 89.19341 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5307 1.1867 0.1232 5 7 4.0720 0.5532 -1.0865 6 6 5.4433 0.0763 -0.8624 7 6 5.4277 -1.0396 0.1503 8 1 4.4927 -1.3626 0.5838 9 6 6.6072 -1.6484 0.5235 10 7 7.7458 -1.2556 -0.0046 11 14 6.5880 -3.0311 1.7794 12 1 5.1917 -3.2817 2.2184 13 1 7.1436 -4.2644 1.1663 14 1 7.4136 -2.6462 2.9521 15 6 4.0146 1.4709 -2.2321 16 6 4.0894 0.6686 -3.5326 17 6 3.0344 -0.4368 -3.6104 18 8 3.2955 -1.4161 -2.6029 19 6 2.4333 -2.5542 -2.6613 20 6 5.5090 0.1909 -3.8810 21 6 5.1798 0.5372 -5.3445 22 6 4.1571 1.5453 -4.7943 23 1 -0.3633 0.4360 -0.9305 24 1 -0.3634 -1.0239 0.0878 25 1 -0.3633 0.5880 0.8429 26 1 1.6209 1.8765 0.8428 27 1 1.7599 1.8145 -0.9307 28 1 3.7782 0.5789 0.9935 29 1 3.9645 2.1800 0.2385 30 1 5.8583 -0.2908 -1.8011 31 1 6.0570 0.8965 -0.4899 32 1 8.5756 -1.6841 0.2577 33 1 3.0792 2.0299 -2.2033 34 1 4.8540 2.1647 -2.1844 35 1 2.0454 -0.0070 -3.4516 36 1 3.0727 -0.9072 -4.5929 37 1 2.6369 -3.2080 -1.8134 38 1 1.3947 -2.2255 -2.6257 39 1 2.6109 -3.0971 -3.5897 40 1 6.2960 0.8110 -3.4519 41 1 5.6661 -0.8739 -3.7080 42 1 4.7274 -0.2872 -5.8957 43 1 6.0061 1.0027 -5.8818 44 1 3.2243 1.5725 -5.3576 45 1 4.5724 2.5370 -4.6151 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383745450.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:41 Heat of formation + Delta-G solvation = -53.049728 kcal Electronic energy + Delta-G solvation = -23409.303287 eV Core-core repulsion = 20235.676241 eV Total energy + Delta-G solvation = -3173.627046 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.51076 -37.47495 -36.18816 -35.48871 -32.33265 -29.59747 -28.69110 -26.94747 -25.98061 -25.46315 -24.91566 -24.19629 -22.20242 -21.80718 -19.47834 -17.98192 -16.28879 -15.97627 -15.67646 -15.41217 -15.23651 -15.15425 -14.48694 -14.36908 -14.02230 -13.72029 -13.44036 -13.07715 -12.42583 -12.19156 -12.02883 -11.85662 -11.68497 -11.59585 -11.41027 -11.06233 -10.99815 -10.94214 -10.63041 -10.53897 -10.41214 -9.99722 -9.82253 -9.67804 -9.66181 -9.33634 -9.12710 -8.78922 -8.66220 -8.18189 -6.81242 -5.80005 -3.75746 3.43378 3.50604 3.57361 4.33546 4.43141 4.62292 4.92791 5.01986 5.24862 5.33226 5.45326 5.49323 5.55698 5.58832 5.69341 5.74250 5.77776 5.87687 5.88003 5.93280 5.95118 5.98698 6.06898 6.09786 6.13336 6.19299 6.22208 6.28822 6.42757 6.43741 6.47972 6.81095 6.85148 6.87409 6.93740 7.56637 7.60132 7.78715 8.09646 8.15609 8.42004 8.53872 8.88272 9.33490 9.85558 11.31406 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.012786 B = 0.008612 C = 0.006594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.346442 B = 3250.605838 C = 4245.045568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.356 6.356 3 C 0.072 3.928 4 C 0.059 3.941 5 N -0.499 5.499 6 C 0.192 3.808 7 C -0.479 4.479 8 H 0.064 0.936 9 C 0.049 3.951 10 N -0.906 5.906 11 Si 0.889 3.111 12 H -0.273 1.273 13 H -0.288 1.288 14 H -0.290 1.290 15 C 0.071 3.929 16 C -0.067 4.067 17 C 0.104 3.896 18 O -0.318 6.318 19 C 0.039 3.961 20 C -0.115 4.115 21 C -0.147 4.147 22 C -0.129 4.129 23 H 0.029 0.971 24 H 0.077 0.923 25 H 0.030 0.970 26 H 0.034 0.966 27 H 0.037 0.963 28 H 0.093 0.907 29 H 0.027 0.973 30 H 0.050 0.950 31 H -0.024 1.024 32 H 0.255 0.745 33 H 0.052 0.948 34 H 0.021 0.979 35 H 0.033 0.967 36 H 0.027 0.973 37 H 0.080 0.920 38 H 0.025 0.975 39 H 0.019 0.981 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.073 0.927 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.767 5.008 -7.341 14.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.274 6.274 3 C -0.005 4.005 4 C -0.070 4.070 5 N -0.223 5.223 6 C 0.067 3.933 7 C -0.518 4.518 8 H 0.083 0.917 9 C -0.150 4.150 10 N -0.547 5.547 11 Si 0.718 3.282 12 H -0.198 1.198 13 H -0.214 1.214 14 H -0.216 1.216 15 C -0.058 4.058 16 C -0.068 4.068 17 C 0.026 3.974 18 O -0.234 6.234 19 C -0.058 4.058 20 C -0.152 4.152 21 C -0.185 4.185 22 C -0.167 4.167 23 H 0.048 0.952 24 H 0.096 0.904 25 H 0.048 0.952 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.111 0.889 29 H 0.045 0.955 30 H 0.068 0.932 31 H -0.007 1.007 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.040 0.960 35 H 0.051 0.949 36 H 0.045 0.955 37 H 0.099 0.901 38 H 0.043 0.957 39 H 0.037 0.963 40 H 0.098 0.902 41 H 0.097 0.903 42 H 0.092 0.908 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.607 4.405 -7.284 14.394 hybrid contribution 0.098 0.145 0.670 0.693 sum -11.509 4.551 -6.614 14.032 Atomic orbital electron populations 1.22644 0.83513 1.01779 0.98698 1.88175 1.17054 1.27231 1.94918 1.22626 0.95340 0.84547 0.98007 1.22013 0.90912 0.97151 0.96880 1.61996 1.25642 1.33690 1.00935 1.19877 0.81662 0.93758 0.97986 1.21243 0.92746 1.16315 1.21514 0.91745 1.24934 0.95684 0.97362 0.96977 1.69972 0.97720 1.42689 1.44341 0.86574 0.77829 0.82459 0.81330 1.19765 1.21412 1.21615 1.21975 0.98526 0.93375 0.91960 1.21737 0.96196 0.95034 0.93839 1.21827 0.95813 0.89551 0.90168 1.88458 1.55224 1.28612 1.51111 1.22548 0.93408 0.89670 1.00200 1.22917 0.96076 1.02794 0.93448 1.22937 0.98855 0.98855 0.97834 1.22918 0.99084 0.98008 0.96672 0.95213 0.90422 0.95162 0.94749 0.94511 0.88902 0.95538 0.93179 1.00664 0.93518 0.92982 0.96047 0.94907 0.95474 0.90138 0.95660 0.96284 0.90206 0.90349 0.90838 0.92070 0.92138 0.90158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.53 16 2 O -0.36 -6.50 10.67 -35.23 -0.38 -6.87 16 3 C 0.07 1.21 6.10 37.16 0.23 1.43 16 4 C 0.06 1.18 5.18 -3.83 -0.02 1.16 16 5 N -0.50 -10.79 2.55 -236.08 -0.60 -11.39 16 6 C 0.19 5.01 4.34 -4.97 -0.02 4.99 16 7 C -0.48 -13.71 8.28 -34.44 -0.29 -13.99 16 8 H 0.06 1.89 7.26 -52.49 -0.38 1.51 16 9 C 0.05 1.44 5.46 -17.82 -0.10 1.34 16 10 N -0.91 -27.48 13.29 55.43 0.74 -26.75 16 11 Si 0.89 22.53 29.54 -169.99 -5.02 17.51 16 12 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 14 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 15 C 0.07 1.30 4.36 -3.83 -0.02 1.28 16 16 C -0.07 -1.13 0.85 -153.69 -0.13 -1.27 16 17 C 0.10 1.76 5.12 37.16 0.19 1.95 16 18 O -0.32 -6.44 8.68 -35.23 -0.31 -6.75 16 19 C 0.04 0.66 11.01 101.05 1.11 1.78 16 20 C -0.12 -2.07 4.89 -25.82 -0.13 -2.20 16 21 C -0.15 -2.07 7.74 -25.83 -0.20 -2.27 16 22 C -0.13 -1.74 7.23 -25.92 -0.19 -1.93 16 23 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.03 0.35 8.12 -51.93 -0.42 -0.07 16 26 H 0.03 0.50 8.12 -51.93 -0.42 0.08 16 27 H 0.04 0.58 6.40 -51.93 -0.33 0.25 16 28 H 0.09 2.10 6.59 -51.93 -0.34 1.76 16 29 H 0.03 0.50 8.05 -51.93 -0.42 0.09 16 30 H 0.05 1.37 4.61 -51.93 -0.24 1.13 16 31 H -0.02 -0.69 8.12 -51.93 -0.42 -1.12 16 32 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.05 0.87 6.19 -51.92 -0.32 0.54 16 34 H 0.02 0.41 7.90 -51.93 -0.41 0.00 16 35 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.03 0.42 7.31 -51.93 -0.38 0.04 16 37 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 38 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.08 1.55 7.71 -51.93 -0.40 1.15 16 41 H 0.08 1.63 7.59 -51.93 -0.39 1.23 16 42 H 0.07 0.98 7.61 -51.93 -0.40 0.58 16 43 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.06 0.72 8.10 -51.93 -0.42 0.30 16 45 H 0.08 1.03 8.10 -51.93 -0.42 0.61 16 LS Contribution 350.68 15.07 5.28 5.28 Total: -1.00 -31.51 350.68 -6.94 -38.45 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -8.21 Total: -3.29 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: 1.56 Total: -6.19 kcal Atomic # 7 Polarization: -38.27 SS G_CDS: 0.13 Total: -38.14 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: -0.68 Total: -13.62 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.51 -6.94 -38.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383745450.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.604 kcal (2) G-P(sol) polarization free energy of solvation -31.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds