Wall clock time and date at job start Mon Mar 30 2020 06:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42897 * 114.00287 * 2 1 4 4 C 1.52999 * 109.47248 * 175.09880 * 3 2 1 5 5 N 1.46896 * 109.46973 * 66.44937 * 4 3 2 6 6 C 1.46903 * 110.99844 * 196.11402 * 5 4 3 7 7 C 1.50699 * 109.46960 * 66.04765 * 6 5 4 8 8 H 1.08001 * 120.00417 * 0.02562 * 7 6 5 9 9 C 1.37877 * 120.00017 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00239 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 120.00094 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47113 * 359.97438 * 11 9 7 13 13 H 1.48505 * 109.47002 * 120.00101 * 11 9 7 14 14 H 1.48498 * 109.47056 * 239.99852 * 11 9 7 15 15 C 1.46897 * 111.00465 * 72.16452 * 5 4 3 16 16 C 1.52992 * 109.47592 * 200.44193 * 15 5 4 17 17 C 1.53005 * 112.85386 * 53.70072 * 16 15 5 18 18 O 1.42903 * 109.46941 * 294.51376 * 17 16 15 19 19 C 1.42900 * 113.99763 * 185.07394 * 18 17 16 20 20 C 1.53788 * 113.61200 * 282.50645 * 16 15 5 21 21 C 1.53954 * 87.01878 * 220.04574 * 20 16 15 22 22 C 1.53777 * 87.11266 * 25.36298 * 21 20 16 23 23 H 1.08995 * 109.46995 * 64.89281 * 1 2 3 24 24 H 1.09004 * 109.47222 * 184.90160 * 1 2 3 25 25 H 1.09000 * 109.46856 * 304.89791 * 1 2 3 26 26 H 1.09001 * 109.47029 * 55.09463 * 3 2 1 27 27 H 1.09004 * 109.46474 * 295.09425 * 3 2 1 28 28 H 1.08998 * 109.46675 * 306.44762 * 4 3 2 29 29 H 1.08998 * 109.46905 * 186.45087 * 4 3 2 30 30 H 1.09000 * 109.47463 * 186.04385 * 6 5 4 31 31 H 1.09001 * 109.47243 * 306.04544 * 6 5 4 32 32 H 0.97005 * 120.00437 * 180.02562 * 10 9 7 33 33 H 1.09008 * 109.46810 * 320.43652 * 15 5 4 34 34 H 1.09002 * 109.47731 * 80.43294 * 15 5 4 35 35 H 1.09000 * 109.46776 * 54.51184 * 17 16 15 36 36 H 1.08996 * 109.47370 * 174.51204 * 17 16 15 37 37 H 1.08993 * 109.46929 * 184.93549 * 19 18 17 38 38 H 1.09000 * 109.47370 * 304.94042 * 19 18 17 39 39 H 1.09000 * 109.46570 * 64.93418 * 19 18 17 40 40 H 1.08998 * 113.61610 * 334.56784 * 20 16 15 41 41 H 1.09006 * 113.61183 * 105.46942 * 20 16 15 42 42 H 1.09000 * 113.53817 * 270.80646 * 21 20 16 43 43 H 1.09001 * 113.73875 * 139.94313 * 21 20 16 44 44 H 1.08996 * 113.61710 * 220.08816 * 22 21 20 45 45 H 1.09007 * 113.69089 * 89.19341 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5307 1.1867 0.1232 5 7 4.0720 0.5532 -1.0865 6 6 5.4433 0.0763 -0.8624 7 6 5.4277 -1.0396 0.1503 8 1 4.4927 -1.3626 0.5838 9 6 6.6072 -1.6484 0.5235 10 7 7.7458 -1.2556 -0.0046 11 14 6.5880 -3.0311 1.7794 12 1 5.1917 -3.2817 2.2184 13 1 7.1436 -4.2644 1.1663 14 1 7.4136 -2.6462 2.9521 15 6 4.0146 1.4709 -2.2321 16 6 4.0894 0.6686 -3.5326 17 6 3.0344 -0.4368 -3.6104 18 8 3.2955 -1.4161 -2.6029 19 6 2.4333 -2.5542 -2.6613 20 6 5.5090 0.1909 -3.8810 21 6 5.1798 0.5372 -5.3445 22 6 4.1571 1.5453 -4.7943 23 1 -0.3633 0.4360 -0.9305 24 1 -0.3634 -1.0239 0.0878 25 1 -0.3633 0.5880 0.8429 26 1 1.6209 1.8765 0.8428 27 1 1.7599 1.8145 -0.9307 28 1 3.7782 0.5789 0.9935 29 1 3.9645 2.1800 0.2385 30 1 5.8583 -0.2908 -1.8011 31 1 6.0570 0.8965 -0.4899 32 1 8.5756 -1.6841 0.2577 33 1 3.0792 2.0299 -2.2033 34 1 4.8540 2.1647 -2.1844 35 1 2.0454 -0.0070 -3.4516 36 1 3.0727 -0.9072 -4.5929 37 1 2.6369 -3.2080 -1.8134 38 1 1.3947 -2.2255 -2.6257 39 1 2.6109 -3.0971 -3.5897 40 1 6.2960 0.8110 -3.4519 41 1 5.6661 -0.8739 -3.7080 42 1 4.7274 -0.2872 -5.8957 43 1 6.0061 1.0027 -5.8818 44 1 3.2243 1.5725 -5.3576 45 1 4.5724 2.5370 -4.6151 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383745450.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:40 Heat of formation + Delta-G solvation = -73.497141 kcal Electronic energy + Delta-G solvation = -23410.189953 eV Core-core repulsion = 20235.676241 eV Total energy + Delta-G solvation = -3174.513712 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.86645 -38.82167 -37.60567 -37.07792 -34.52503 -31.00843 -30.37377 -28.54797 -27.24007 -26.91010 -26.25047 -25.70008 -24.01229 -23.19480 -21.12484 -19.33423 -18.31725 -17.37868 -17.10190 -16.89093 -16.59892 -16.51292 -16.33488 -15.73773 -15.38646 -15.24223 -14.92450 -14.60693 -14.15223 -13.68152 -13.54522 -13.33314 -13.27786 -12.93505 -12.87394 -12.67051 -12.56109 -12.39702 -12.33135 -12.19607 -11.88726 -11.76933 -11.41984 -11.21440 -11.16027 -10.81225 -10.73423 -10.41240 -10.31368 -10.04824 -8.58493 -8.05868 -6.09411 1.39644 1.40651 1.54567 2.47833 3.08738 3.16153 3.26270 3.45863 3.75478 3.97148 4.00288 4.16051 4.30582 4.36243 4.48027 4.53492 4.54650 4.59379 4.66033 4.67186 4.69649 4.76314 4.79932 4.85123 4.89050 4.92127 4.95762 4.97251 5.05804 5.07402 5.14675 5.21067 5.33940 5.40428 5.52114 5.62882 5.63963 5.82986 6.31095 6.51941 6.67567 6.83634 6.97082 7.08098 7.56769 9.04891 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.012786 B = 0.008612 C = 0.006594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.346442 B = 3250.605838 C = 4245.045568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.394 6.394 3 C 0.083 3.917 4 C 0.055 3.945 5 N -0.499 5.499 6 C 0.212 3.788 7 C -0.486 4.486 8 H 0.052 0.948 9 C -0.003 4.003 10 N -0.939 5.939 11 Si 0.955 3.045 12 H -0.269 1.269 13 H -0.282 1.282 14 H -0.282 1.282 15 C 0.069 3.931 16 C -0.075 4.075 17 C 0.105 3.895 18 O -0.360 6.360 19 C 0.040 3.960 20 C -0.127 4.127 21 C -0.131 4.131 22 C -0.109 4.109 23 H 0.045 0.955 24 H 0.084 0.916 25 H 0.047 0.953 26 H 0.060 0.940 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.033 0.967 30 H 0.035 0.965 31 H -0.063 1.063 32 H 0.258 0.742 33 H 0.078 0.922 34 H 0.010 0.990 35 H 0.045 0.955 36 H 0.045 0.955 37 H 0.062 0.938 38 H 0.043 0.957 39 H 0.037 0.963 40 H 0.053 0.947 41 H 0.039 0.961 42 H 0.086 0.914 43 H 0.075 0.925 44 H 0.089 0.911 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.136 5.514 -8.458 17.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.313 6.313 3 C 0.006 3.994 4 C -0.074 4.074 5 N -0.222 5.222 6 C 0.086 3.914 7 C -0.525 4.525 8 H 0.070 0.930 9 C -0.199 4.199 10 N -0.582 5.582 11 Si 0.782 3.218 12 H -0.193 1.193 13 H -0.208 1.208 14 H -0.208 1.208 15 C -0.059 4.059 16 C -0.075 4.075 17 C 0.028 3.972 18 O -0.278 6.278 19 C -0.057 4.057 20 C -0.165 4.165 21 C -0.169 4.169 22 C -0.146 4.146 23 H 0.063 0.937 24 H 0.103 0.897 25 H 0.066 0.934 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.051 0.949 30 H 0.052 0.948 31 H -0.045 1.045 32 H 0.066 0.934 33 H 0.096 0.904 34 H 0.028 0.972 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.081 0.919 38 H 0.061 0.939 39 H 0.055 0.945 40 H 0.071 0.929 41 H 0.058 0.942 42 H 0.105 0.895 43 H 0.093 0.907 44 H 0.108 0.892 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.007 4.922 -8.406 17.061 hybrid contribution 0.811 0.001 1.031 1.312 sum -13.195 4.922 -7.375 15.898 Atomic orbital electron populations 1.22824 0.80947 1.02867 1.00235 1.88116 1.19932 1.28004 1.95266 1.22483 0.92389 0.84654 0.99863 1.22044 0.93927 0.96446 0.94963 1.61930 1.22304 1.35446 1.02545 1.19477 0.83812 0.91891 0.96239 1.21427 0.92239 1.16883 1.21904 0.92992 1.25743 0.95327 0.99862 0.98986 1.70097 0.98292 1.44026 1.45747 0.85537 0.77966 0.79370 0.78946 1.19315 1.20827 1.20770 1.22099 0.99246 0.93081 0.91497 1.21897 0.95206 0.95858 0.94565 1.21936 0.96064 0.88973 0.90265 1.88403 1.56593 1.30029 1.52746 1.22571 0.93878 0.88932 1.00364 1.22823 0.96570 0.99768 0.97318 1.22880 0.99539 0.99442 0.95007 1.22839 1.00123 0.97502 0.94182 0.93674 0.89729 0.93437 0.92196 0.92900 0.92457 0.94885 0.94753 1.04549 0.93371 0.90389 0.97193 0.93675 0.93665 0.91923 0.93884 0.94464 0.92871 0.94237 0.89542 0.90668 0.89207 0.89267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 11.01 113.37 1.25 1.92 16 2 O -0.39 -13.83 10.67 -148.98 -1.59 -15.42 16 3 C 0.08 2.63 6.10 71.98 0.44 3.07 16 4 C 0.05 2.22 5.18 86.30 0.45 2.67 16 5 N -0.50 -22.08 2.55 -900.81 -2.30 -24.38 16 6 C 0.21 11.69 4.34 85.56 0.37 12.06 16 7 C -0.49 -29.02 8.28 25.60 0.21 -28.80 16 8 H 0.05 3.18 7.26 -2.91 -0.02 3.16 16 9 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 10 N -0.94 -59.11 13.29 21.45 0.28 -58.82 16 11 Si 0.96 47.45 29.54 68.60 2.03 49.47 16 12 H -0.27 -13.04 7.11 99.48 0.71 -12.33 16 13 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 14 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 15 C 0.07 2.51 4.36 86.30 0.38 2.88 16 16 C -0.07 -2.43 0.85 -51.65 -0.04 -2.48 16 17 C 0.10 3.35 5.12 71.98 0.37 3.72 16 18 O -0.36 -14.59 8.68 -148.98 -1.29 -15.89 16 19 C 0.04 1.31 11.01 113.37 1.25 2.56 16 20 C -0.13 -4.70 4.89 31.18 0.15 -4.55 16 21 C -0.13 -3.42 7.74 31.18 0.24 -3.18 16 22 C -0.11 -2.59 7.23 31.12 0.22 -2.36 16 23 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 25 H 0.05 0.97 8.12 -2.39 -0.02 0.95 16 26 H 0.06 1.59 8.12 -2.39 -0.02 1.57 16 27 H 0.05 1.50 6.40 -2.38 -0.02 1.49 16 28 H 0.06 2.71 6.59 -2.39 -0.02 2.69 16 29 H 0.03 1.27 8.05 -2.39 -0.02 1.25 16 30 H 0.03 2.01 4.61 -2.39 -0.01 2.00 16 31 H -0.06 -3.86 8.12 -2.39 -0.02 -3.88 16 32 H 0.26 15.33 8.31 -92.70 -0.77 14.56 16 33 H 0.08 2.41 6.19 -2.38 -0.01 2.40 16 34 H 0.01 0.38 7.90 -2.39 -0.02 0.36 16 35 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.05 1.27 7.31 -2.39 -0.02 1.26 16 37 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.04 1.06 8.14 -2.39 -0.02 1.05 16 40 H 0.05 2.19 7.71 -2.39 -0.02 2.18 16 41 H 0.04 1.73 7.59 -2.38 -0.02 1.71 16 42 H 0.09 2.05 7.61 -2.39 -0.02 2.04 16 43 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.09 1.69 8.10 -2.39 -0.02 1.67 16 45 H 0.09 1.99 8.10 -2.38 -0.02 1.98 16 Total: -1.00 -71.58 350.68 3.81 -67.78 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: 0.93 Total: 9.49 kcal Atomic # 6 Polarization: -17.98 SS G_CDS: 5.75 Total: -12.23 kcal Atomic # 7 Polarization: -81.19 SS G_CDS: -2.02 Total: -83.20 kcal Atomic # 8 Polarization: -28.43 SS G_CDS: -2.88 Total: -31.31 kcal Atomic # 14 Polarization: 47.45 SS G_CDS: 2.03 Total: 49.47 kcal Total: -71.58 3.81 -67.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383745450.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.722 kcal (2) G-P(sol) polarization free energy of solvation -71.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds