Wall clock time and date at job start Mon Mar 30 2020 04:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 109.47171 * 2 1 4 4 C 1.52999 * 109.47033 * 240.00172 * 2 1 3 5 5 C 1.53003 * 109.47033 * 180.02562 * 4 2 1 6 6 C 1.53005 * 109.47074 * 59.99938 * 5 4 2 7 7 C 1.53009 * 109.46792 * 299.99664 * 6 5 4 8 8 C 1.52993 * 109.46976 * 180.02562 * 7 6 5 9 9 O 1.42899 * 109.47243 * 65.29600 * 8 7 6 10 10 N 1.46900 * 109.47277 * 300.00216 * 7 6 5 11 11 C 1.46899 * 110.99784 * 180.49367 * 10 7 6 12 12 C 1.53002 * 109.47022 * 176.11282 * 11 10 7 13 13 O 1.42906 * 109.47182 * 64.99886 * 12 11 10 14 14 C 1.42899 * 113.99929 * 180.02562 * 13 12 11 15 15 C 1.50706 * 109.46830 * 180.02562 * 14 13 12 16 16 H 1.07995 * 119.99918 * 359.97438 * 15 14 13 17 17 C 1.37873 * 119.99748 * 179.97438 * 15 14 13 18 18 N 1.31517 * 119.99754 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 120.00025 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47347 * 89.99750 * 19 17 15 21 21 H 1.48507 * 109.47187 * 209.99736 * 19 17 15 22 22 H 1.48502 * 109.47272 * 329.99453 * 19 17 15 23 23 C 1.52997 * 109.47035 * 119.99498 * 2 1 3 24 24 H 1.09003 * 109.46861 * 300.00601 * 1 2 3 25 25 H 1.09002 * 109.47080 * 59.99628 * 1 2 3 26 26 H 1.08994 * 109.47177 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46522 * 299.99849 * 4 2 1 28 28 H 1.08990 * 109.47283 * 59.99854 * 4 2 1 29 29 H 1.08993 * 109.47263 * 179.97438 * 5 4 2 30 30 H 1.08997 * 109.47004 * 299.99983 * 5 4 2 31 31 H 1.08994 * 109.47475 * 59.99746 * 6 5 4 32 32 H 1.08995 * 109.47035 * 180.02562 * 6 5 4 33 33 H 1.08998 * 109.47237 * 185.29697 * 8 7 6 34 34 H 1.09000 * 109.47178 * 305.29649 * 8 7 6 35 35 H 0.96704 * 114.00328 * 180.02562 * 9 8 7 36 36 H 1.00902 * 111.00002 * 56.53993 * 10 7 6 37 37 H 1.09002 * 109.46941 * 296.10959 * 11 10 7 38 38 H 1.08991 * 109.47112 * 56.11486 * 11 10 7 39 39 H 1.08999 * 109.47401 * 184.99881 * 12 11 10 40 40 H 1.08998 * 109.46968 * 305.00329 * 12 11 10 41 41 H 1.09001 * 109.46910 * 299.99673 * 14 13 12 42 42 H 1.08998 * 109.47423 * 60.00355 * 14 13 12 43 43 H 0.97004 * 119.99721 * 180.02562 * 18 17 15 44 44 H 1.08993 * 109.47361 * 300.00266 * 23 2 1 45 45 H 1.08997 * 109.46688 * 60.00464 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7218 -1.2489 6 6 4.0795 -1.4434 0.0003 7 6 3.5695 -0.7221 1.2496 8 6 4.0794 -1.4433 2.4988 9 8 5.5030 -1.3366 2.5627 10 7 4.0597 0.6627 1.2499 11 6 3.5983 1.3842 2.4434 12 6 4.2063 2.7882 2.4574 13 8 3.7054 3.5353 1.3469 14 6 4.2141 4.8682 1.2662 15 6 3.6221 5.5599 0.0653 16 1 2.9273 5.0341 -0.5727 17 6 3.9676 6.8641 -0.2188 18 7 3.4514 7.4676 -1.2672 19 14 5.1699 7.7734 0.8844 20 1 6.5538 7.5606 0.3897 21 1 4.8561 9.2248 0.8683 22 1 5.0556 7.2577 2.2723 23 6 2.0400 -0.7211 1.2493 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.6766 -1.7489 -1.2492 28 1 1.6767 -0.2074 -2.1392 29 1 3.9334 -1.2359 -2.1386 30 1 3.9337 0.3057 -1.2487 31 1 3.7158 -2.4709 0.0002 32 1 5.1695 -1.4434 0.0008 33 1 3.6408 -0.9871 3.3863 34 1 3.7956 -2.4947 2.4527 35 1 5.8961 -1.7726 3.3312 36 1 3.7837 1.1442 0.4071 37 1 2.5110 1.4593 2.4249 38 1 3.9102 0.8444 3.3374 39 1 3.9362 3.2919 3.3856 40 1 5.2914 2.7149 2.3862 41 1 3.9445 5.4152 2.1697 42 1 5.2994 4.8378 1.1701 43 1 3.6947 8.3850 -1.4673 44 1 1.6767 -0.2073 2.1392 45 1 1.6767 -1.7488 1.2493 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385168520.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:23 Heat of formation + Delta-G solvation = -115.335681 kcal Electronic energy + Delta-G solvation = -22425.921542 eV Core-core repulsion = 19249.593575 eV Total energy + Delta-G solvation = -3176.327967 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.11219 -36.95473 -36.50920 -34.32697 -32.68128 -32.30309 -30.70097 -28.26289 -26.78730 -26.41322 -25.67781 -22.39086 -21.80961 -21.17465 -20.45498 -18.70099 -17.31582 -16.85018 -16.16578 -15.50157 -15.46401 -15.11213 -14.64796 -14.44085 -14.24204 -14.02991 -13.43875 -13.35644 -12.96435 -12.65710 -12.50944 -12.39189 -12.11782 -12.00753 -11.79259 -11.55498 -11.24024 -11.16024 -10.94944 -10.86582 -10.67561 -10.51026 -10.28773 -10.15384 -10.02223 -9.84492 -9.78791 -9.15186 -8.80488 -8.42554 -8.00844 -6.09450 -4.08034 3.27414 3.33974 3.36004 4.05533 4.38117 4.44600 4.65797 4.72023 4.79627 4.86617 5.05052 5.15280 5.22519 5.25719 5.37389 5.39214 5.48861 5.49133 5.57726 5.61791 5.67711 5.72723 5.76498 5.84435 5.88887 5.96642 6.00306 6.12229 6.18107 6.26410 6.30175 6.31170 6.38457 6.45422 6.56032 6.66737 7.04876 7.35876 7.62444 7.64922 7.79201 8.05956 8.69983 9.01371 9.50422 11.03583 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.019424 B = 0.004832 C = 0.004289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.149266 B = 5793.266750 C = 6526.920565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.096 4.096 3 H 0.080 0.920 4 C -0.113 4.113 5 C -0.126 4.126 6 C -0.099 4.099 7 C 0.118 3.882 8 C 0.090 3.910 9 O -0.549 6.549 10 N -0.662 5.662 11 C 0.063 3.937 12 C 0.060 3.940 13 O -0.383 6.383 14 C 0.171 3.829 15 C -0.517 4.517 16 H 0.081 0.919 17 C 0.072 3.928 18 N -0.896 5.896 19 Si 0.876 3.124 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.267 1.267 23 C -0.141 4.141 24 H 0.053 0.947 25 H 0.056 0.944 26 H 0.049 0.951 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.041 0.959 34 H 0.041 0.959 35 H 0.368 0.632 36 H 0.355 0.645 37 H 0.035 0.965 38 H 0.074 0.926 39 H 0.038 0.962 40 H 0.048 0.952 41 H 0.001 0.999 42 H -0.001 1.001 43 H 0.266 0.734 44 H 0.064 0.936 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.348 -20.524 7.114 21.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.115 4.115 3 H 0.098 0.902 4 C -0.150 4.150 5 C -0.164 4.164 6 C -0.136 4.136 7 C 0.026 3.974 8 C 0.011 3.989 9 O -0.352 6.352 10 N -0.297 5.297 11 C -0.066 4.066 12 C -0.018 4.018 13 O -0.302 6.302 14 C 0.096 3.904 15 C -0.555 4.555 16 H 0.099 0.901 17 C -0.130 4.130 18 N -0.535 5.535 19 Si 0.703 3.297 20 H -0.199 1.199 21 H -0.209 1.209 22 H -0.192 1.192 23 C -0.180 4.180 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.213 0.787 36 H 0.178 0.822 37 H 0.053 0.947 38 H 0.093 0.907 39 H 0.056 0.944 40 H 0.066 0.934 41 H 0.018 0.982 42 H 0.017 0.983 43 H 0.076 0.924 44 H 0.083 0.917 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.967 -20.223 6.575 21.287 hybrid contribution -0.136 0.567 1.117 1.260 sum -1.103 -19.656 7.692 21.136 Atomic orbital electron populations 1.21778 0.95170 1.01136 1.01980 1.21134 0.95619 1.00444 0.94288 0.90197 1.21599 0.95749 1.00070 0.97621 1.21597 0.95310 1.01849 0.97632 1.21465 1.01717 0.97599 0.92859 1.20914 0.91338 0.90558 0.94583 1.22197 0.82045 0.97643 0.97014 1.86674 1.19333 1.79782 1.49435 1.60578 1.62630 1.00693 1.05750 1.21975 0.97478 0.93057 0.94092 1.22367 0.98017 0.91105 0.90289 1.87838 1.69305 1.26997 1.46110 1.20561 0.93422 0.79251 0.97197 1.20887 1.27732 0.97386 1.09473 0.90057 1.24759 0.96072 0.96944 0.95178 1.69881 1.43963 1.12890 1.26760 0.86851 0.81923 0.79329 0.81644 1.19893 1.20853 1.19153 1.22234 0.96250 1.00940 0.98593 0.92791 0.92453 0.93168 0.92440 0.91862 0.92003 0.90904 0.92405 0.90507 0.94073 0.94042 0.78718 0.82207 0.94704 0.90749 0.94389 0.93399 0.98177 0.98335 0.92422 0.91696 0.91870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.19 37.16 0.34 -1.26 16 2 C -0.10 -1.18 2.46 -90.62 -0.22 -1.41 16 3 H 0.08 1.22 6.75 -51.93 -0.35 0.87 16 4 C -0.11 -1.28 5.20 -26.73 -0.14 -1.42 16 5 C -0.13 -1.52 5.66 -26.73 -0.15 -1.67 16 6 C -0.10 -1.16 4.82 -26.72 -0.13 -1.29 16 7 C 0.12 1.43 0.46 -131.63 -0.06 1.37 16 8 C 0.09 0.94 5.38 37.15 0.20 1.14 16 9 O -0.55 -6.30 12.96 -35.23 -0.46 -6.76 16 10 N -0.66 -10.06 5.69 -99.99 -0.57 -10.63 16 11 C 0.06 0.96 5.30 -3.82 -0.02 0.94 16 12 C 0.06 1.11 6.28 37.16 0.23 1.34 16 13 O -0.38 -8.97 9.91 -35.23 -0.35 -9.32 16 14 C 0.17 4.43 4.76 36.01 0.17 4.60 16 15 C -0.52 -15.50 9.99 -34.44 -0.34 -15.85 16 16 H 0.08 2.65 8.06 -52.49 -0.42 2.23 16 17 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 18 N -0.90 -27.86 13.96 55.43 0.77 -27.09 16 19 Si 0.88 21.76 27.47 -169.99 -4.67 17.09 16 20 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 23 C -0.14 -1.58 3.64 -26.76 -0.10 -1.68 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.07 1.04 6.58 -51.93 -0.34 0.70 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.08 1.02 7.83 -51.93 -0.41 0.61 16 33 H 0.04 0.41 6.61 -51.93 -0.34 0.07 16 34 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.37 2.51 9.12 45.56 0.42 2.92 16 36 H 0.36 6.08 4.83 -39.29 -0.19 5.89 16 37 H 0.03 0.53 6.53 -51.93 -0.34 0.20 16 38 H 0.07 0.99 6.21 -51.93 -0.32 0.67 16 39 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.00 0.01 7.20 -51.93 -0.37 -0.36 16 42 H 0.00 -0.03 7.57 -51.93 -0.39 -0.42 16 43 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 44 H 0.06 0.75 6.50 -51.93 -0.34 0.41 16 45 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 341.02 15.07 5.14 5.14 Total: -1.00 -32.44 341.02 -7.67 -40.11 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -7.22 Total: 4.60 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: -0.32 Total: -13.14 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: 0.20 Total: -37.72 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: -0.81 Total: -16.08 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.44 -7.67 -40.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385168520.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.228 kcal (2) G-P(sol) polarization free energy of solvation -32.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds