Wall clock time and date at job start Mon Mar 30 2020 04:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 109.47171 * 2 1 4 4 C 1.52999 * 109.47033 * 240.00172 * 2 1 3 5 5 C 1.53003 * 109.47033 * 180.02562 * 4 2 1 6 6 C 1.53005 * 109.47074 * 59.99938 * 5 4 2 7 7 C 1.53009 * 109.46792 * 299.99664 * 6 5 4 8 8 C 1.52993 * 109.46976 * 180.02562 * 7 6 5 9 9 O 1.42899 * 109.47243 * 65.29600 * 8 7 6 10 10 N 1.46900 * 109.47277 * 300.00216 * 7 6 5 11 11 C 1.46899 * 110.99784 * 180.49367 * 10 7 6 12 12 C 1.53002 * 109.47022 * 176.11282 * 11 10 7 13 13 O 1.42906 * 109.47182 * 64.99886 * 12 11 10 14 14 C 1.42899 * 113.99929 * 180.02562 * 13 12 11 15 15 C 1.50706 * 109.46830 * 180.02562 * 14 13 12 16 16 H 1.07995 * 119.99918 * 359.97438 * 15 14 13 17 17 C 1.37873 * 119.99748 * 179.97438 * 15 14 13 18 18 N 1.31517 * 119.99754 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 120.00025 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47347 * 89.99750 * 19 17 15 21 21 H 1.48507 * 109.47187 * 209.99736 * 19 17 15 22 22 H 1.48502 * 109.47272 * 329.99453 * 19 17 15 23 23 C 1.52997 * 109.47035 * 119.99498 * 2 1 3 24 24 H 1.09003 * 109.46861 * 300.00601 * 1 2 3 25 25 H 1.09002 * 109.47080 * 59.99628 * 1 2 3 26 26 H 1.08994 * 109.47177 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46522 * 299.99849 * 4 2 1 28 28 H 1.08990 * 109.47283 * 59.99854 * 4 2 1 29 29 H 1.08993 * 109.47263 * 179.97438 * 5 4 2 30 30 H 1.08997 * 109.47004 * 299.99983 * 5 4 2 31 31 H 1.08994 * 109.47475 * 59.99746 * 6 5 4 32 32 H 1.08995 * 109.47035 * 180.02562 * 6 5 4 33 33 H 1.08998 * 109.47237 * 185.29697 * 8 7 6 34 34 H 1.09000 * 109.47178 * 305.29649 * 8 7 6 35 35 H 0.96704 * 114.00328 * 180.02562 * 9 8 7 36 36 H 1.00902 * 111.00002 * 56.53993 * 10 7 6 37 37 H 1.09002 * 109.46941 * 296.10959 * 11 10 7 38 38 H 1.08991 * 109.47112 * 56.11486 * 11 10 7 39 39 H 1.08999 * 109.47401 * 184.99881 * 12 11 10 40 40 H 1.08998 * 109.46968 * 305.00329 * 12 11 10 41 41 H 1.09001 * 109.46910 * 299.99673 * 14 13 12 42 42 H 1.08998 * 109.47423 * 60.00355 * 14 13 12 43 43 H 0.97004 * 119.99721 * 180.02562 * 18 17 15 44 44 H 1.08993 * 109.47361 * 300.00266 * 23 2 1 45 45 H 1.08997 * 109.46688 * 60.00464 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7218 -1.2489 6 6 4.0795 -1.4434 0.0003 7 6 3.5695 -0.7221 1.2496 8 6 4.0794 -1.4433 2.4988 9 8 5.5030 -1.3366 2.5627 10 7 4.0597 0.6627 1.2499 11 6 3.5983 1.3842 2.4434 12 6 4.2063 2.7882 2.4574 13 8 3.7054 3.5353 1.3469 14 6 4.2141 4.8682 1.2662 15 6 3.6221 5.5599 0.0653 16 1 2.9273 5.0341 -0.5727 17 6 3.9676 6.8641 -0.2188 18 7 3.4514 7.4676 -1.2672 19 14 5.1699 7.7734 0.8844 20 1 6.5538 7.5606 0.3897 21 1 4.8561 9.2248 0.8683 22 1 5.0556 7.2577 2.2723 23 6 2.0400 -0.7211 1.2493 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.6766 -1.7489 -1.2492 28 1 1.6767 -0.2074 -2.1392 29 1 3.9334 -1.2359 -2.1386 30 1 3.9337 0.3057 -1.2487 31 1 3.7158 -2.4709 0.0002 32 1 5.1695 -1.4434 0.0008 33 1 3.6408 -0.9871 3.3863 34 1 3.7956 -2.4947 2.4527 35 1 5.8961 -1.7726 3.3312 36 1 3.7837 1.1442 0.4071 37 1 2.5110 1.4593 2.4249 38 1 3.9102 0.8444 3.3374 39 1 3.9362 3.2919 3.3856 40 1 5.2914 2.7149 2.3862 41 1 3.9445 5.4152 2.1697 42 1 5.2994 4.8378 1.1701 43 1 3.6947 8.3850 -1.4673 44 1 1.6767 -0.2073 2.1392 45 1 1.6767 -1.7488 1.2493 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385168520.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:22 Heat of formation + Delta-G solvation = -140.076282 kcal Electronic energy + Delta-G solvation = -22426.994375 eV Core-core repulsion = 19249.593575 eV Total energy + Delta-G solvation = -3177.400800 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.09194 -38.68308 -37.35943 -35.55121 -34.77139 -33.38785 -31.86722 -30.14335 -28.24309 -27.33730 -26.55875 -24.02300 -23.47000 -22.36212 -21.40077 -19.68490 -19.06848 -18.14029 -17.57840 -16.89343 -16.83438 -16.44443 -16.15342 -15.73118 -15.51096 -15.01160 -14.84026 -14.50911 -14.44888 -14.04542 -13.66878 -13.54721 -13.42875 -13.24104 -12.95666 -12.84364 -12.62663 -12.55464 -12.33370 -12.05440 -12.02965 -11.84407 -11.75406 -11.36656 -11.29048 -11.13540 -10.94435 -10.89342 -10.64678 -10.35041 -9.14628 -8.38588 -6.46139 1.31887 1.34699 1.45486 2.28061 2.94091 3.08732 3.16323 3.47319 3.75368 3.79322 3.96573 4.12760 4.19049 4.27478 4.35210 4.43209 4.49993 4.51147 4.53404 4.56307 4.62578 4.67344 4.69803 4.77337 4.83126 4.86509 4.88733 4.95383 4.98406 5.02329 5.08768 5.17746 5.30990 5.35583 5.42498 5.43344 5.47505 5.57127 5.92642 6.29235 6.48335 6.57280 6.73886 7.08994 7.18316 8.78460 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.019424 B = 0.004832 C = 0.004289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.149266 B = 5793.266750 C = 6526.920565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.097 4.097 3 H 0.038 0.962 4 C -0.108 4.108 5 C -0.126 4.126 6 C -0.092 4.092 7 C 0.111 3.889 8 C 0.091 3.909 9 O -0.574 6.574 10 N -0.675 5.675 11 C 0.072 3.928 12 C 0.053 3.947 13 O -0.404 6.404 14 C 0.182 3.818 15 C -0.543 4.543 16 H 0.030 0.970 17 C 0.015 3.985 18 N -0.941 5.941 19 Si 0.954 3.046 20 H -0.261 1.261 21 H -0.271 1.271 22 H -0.247 1.247 23 C -0.133 4.133 24 H 0.048 0.952 25 H 0.047 0.953 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.053 0.947 29 H 0.072 0.928 30 H 0.039 0.961 31 H 0.082 0.918 32 H 0.059 0.941 33 H 0.048 0.952 34 H 0.067 0.933 35 H 0.387 0.613 36 H 0.338 0.662 37 H 0.031 0.969 38 H 0.101 0.899 39 H 0.055 0.945 40 H 0.046 0.954 41 H 0.010 0.990 42 H 0.006 0.994 43 H 0.273 0.727 44 H 0.061 0.939 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.618 -22.100 9.350 24.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.116 4.116 3 H 0.056 0.944 4 C -0.145 4.145 5 C -0.163 4.163 6 C -0.130 4.130 7 C 0.020 3.980 8 C 0.012 3.988 9 O -0.380 6.380 10 N -0.308 5.308 11 C -0.057 4.057 12 C -0.024 4.024 13 O -0.324 6.324 14 C 0.106 3.894 15 C -0.581 4.581 16 H 0.049 0.951 17 C -0.184 4.184 18 N -0.580 5.580 19 Si 0.776 3.224 20 H -0.186 1.186 21 H -0.196 1.196 22 H -0.171 1.171 23 C -0.172 4.172 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.092 0.908 27 H 0.100 0.900 28 H 0.072 0.928 29 H 0.090 0.910 30 H 0.058 0.942 31 H 0.100 0.900 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.085 0.915 35 H 0.236 0.764 36 H 0.159 0.841 37 H 0.049 0.951 38 H 0.119 0.881 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.028 0.972 42 H 0.024 0.976 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.238 -21.839 8.837 23.560 hybrid contribution -0.408 0.986 0.345 1.121 sum -0.646 -20.853 9.181 22.794 Atomic orbital electron populations 1.21756 0.94273 1.02403 1.01352 1.21090 0.96368 0.98462 0.95643 0.94360 1.21562 0.95080 1.01093 0.96801 1.21569 0.95920 1.00163 0.98680 1.21417 1.00591 0.98673 0.92310 1.21108 0.92026 0.88904 0.95933 1.22211 0.81736 0.98814 0.95992 1.86622 1.19921 1.80472 1.50988 1.60634 1.63134 1.02159 1.04880 1.21933 0.96997 0.91520 0.95221 1.22686 0.98130 0.92363 0.89228 1.87819 1.69763 1.26172 1.48609 1.20271 0.93262 0.80412 0.95439 1.21134 1.27796 0.98322 1.10830 0.95147 1.25808 0.98058 0.97659 0.96826 1.70031 1.45541 1.13688 1.28789 0.85626 0.78979 0.77925 0.79916 1.18556 1.19618 1.17082 1.22154 0.95481 1.02009 0.97531 0.93265 0.93336 0.90832 0.90042 0.92782 0.90953 0.94176 0.89961 0.92249 0.93377 0.91513 0.76448 0.84109 0.95129 0.88128 0.92736 0.93563 0.97189 0.97626 0.91799 0.91996 0.89360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 9.19 71.98 0.66 -2.41 16 2 C -0.10 -2.39 2.46 -10.79 -0.03 -2.41 16 3 H 0.04 1.26 6.75 -2.38 -0.02 1.24 16 4 C -0.11 -2.41 5.20 30.59 0.16 -2.25 16 5 C -0.13 -3.06 5.66 30.60 0.17 -2.88 16 6 C -0.09 -2.05 4.82 30.60 0.15 -1.90 16 7 C 0.11 2.54 0.46 3.51 0.00 2.54 16 8 C 0.09 1.64 5.38 71.98 0.39 2.03 16 9 O -0.57 -11.84 12.96 -148.98 -1.93 -13.77 16 10 N -0.68 -20.59 5.69 -470.26 -2.68 -23.26 16 11 C 0.07 2.15 5.30 86.30 0.46 2.60 16 12 C 0.05 1.92 6.28 71.98 0.45 2.37 16 13 O -0.40 -19.39 9.91 -148.98 -1.48 -20.87 16 14 C 0.18 9.49 4.76 71.24 0.34 9.83 16 15 C -0.54 -33.87 9.99 25.60 0.26 -33.62 16 16 H 0.03 2.12 8.06 -2.91 -0.02 2.10 16 17 C 0.01 0.88 5.47 84.65 0.46 1.34 16 18 N -0.94 -60.10 13.96 21.45 0.30 -59.80 16 19 Si 0.95 44.49 27.47 68.60 1.88 46.38 16 20 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 21 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 22 H -0.25 -10.69 6.54 99.48 0.65 -10.04 16 23 C -0.13 -2.74 3.64 30.58 0.11 -2.63 16 24 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.04 1.23 6.58 -2.39 -0.02 1.21 16 31 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.06 1.54 7.83 -2.39 -0.02 1.52 16 33 H 0.05 0.80 6.61 -2.39 -0.02 0.78 16 34 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.39 4.26 9.12 -74.05 -0.68 3.59 16 36 H 0.34 12.26 4.83 -89.69 -0.43 11.82 16 37 H 0.03 0.93 6.53 -2.39 -0.02 0.92 16 38 H 0.10 2.45 6.21 -2.39 -0.01 2.44 16 39 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.01 0.52 7.20 -2.39 -0.02 0.50 16 42 H 0.01 0.30 7.57 -2.39 -0.02 0.29 16 43 H 0.27 15.97 8.31 -92.71 -0.77 15.20 16 44 H 0.06 1.33 6.50 -2.39 -0.02 1.31 16 45 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -72.82 341.02 -0.52 -73.34 By element: Atomic # 1 Polarization: 25.58 SS G_CDS: -0.20 Total: 25.38 kcal Atomic # 6 Polarization: -30.97 SS G_CDS: 3.58 Total: -27.39 kcal Atomic # 7 Polarization: -80.68 SS G_CDS: -2.38 Total: -83.06 kcal Atomic # 8 Polarization: -31.23 SS G_CDS: -3.41 Total: -34.64 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 1.88 Total: 46.38 kcal Total: -72.82 -0.52 -73.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385168520.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.740 kcal (2) G-P(sol) polarization free energy of solvation -72.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds