Wall clock time and date at job start Mon Mar 30 2020 04:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47246 * 2 1 4 4 C 1.52997 * 109.46915 * 120.00374 * 2 1 3 5 5 C 1.53007 * 109.46844 * 179.97438 * 4 2 1 6 6 C 1.52994 * 109.47270 * 299.99886 * 5 4 2 7 7 C 1.53008 * 109.47099 * 59.99954 * 6 5 4 8 8 C 1.52995 * 109.46779 * 60.00076 * 7 6 5 9 9 O 1.42901 * 109.47310 * 65.42630 * 8 7 6 10 10 N 1.46906 * 109.47046 * 179.97438 * 7 6 5 11 11 C 1.46893 * 110.99720 * 177.61567 * 10 7 6 12 12 C 1.53001 * 109.47199 * 174.64089 * 11 10 7 13 13 O 1.42905 * 109.46547 * 65.00275 * 12 11 10 14 14 C 1.42897 * 113.99770 * 180.02562 * 13 12 11 15 15 C 1.50701 * 109.47453 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99725 * 359.97438 * 15 14 13 17 17 C 1.37872 * 120.00695 * 179.97438 * 15 14 13 18 18 N 1.31524 * 119.99710 * 0.27252 * 17 15 14 19 19 Si 1.86793 * 120.00452 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47102 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.47278 * 119.99716 * 19 17 15 22 22 H 1.48501 * 109.47223 * 239.99879 * 19 17 15 23 23 C 1.52993 * 109.47203 * 300.00022 * 7 6 5 24 24 H 1.08993 * 109.47246 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46694 * 300.00071 * 1 2 3 26 26 H 1.08998 * 109.47045 * 59.99664 * 1 2 3 27 27 H 1.08999 * 109.47076 * 299.99321 * 4 2 1 28 28 H 1.08997 * 109.47381 * 60.00256 * 4 2 1 29 29 H 1.09005 * 109.46982 * 60.00242 * 5 4 2 30 30 H 1.08998 * 109.46974 * 179.97438 * 5 4 2 31 31 H 1.09005 * 109.47409 * 300.00095 * 6 5 4 32 32 H 1.08997 * 109.47550 * 179.97438 * 6 5 4 33 33 H 1.09002 * 109.46831 * 185.42162 * 8 7 6 34 34 H 1.09002 * 109.47730 * 305.42154 * 8 7 6 35 35 H 0.96703 * 113.99963 * 179.97438 * 9 8 7 36 36 H 1.00903 * 110.99859 * 53.66313 * 10 7 6 37 37 H 1.09008 * 109.47291 * 54.64559 * 11 10 7 38 38 H 1.08996 * 109.47275 * 294.64642 * 11 10 7 39 39 H 1.08997 * 109.47394 * 305.00989 * 12 11 10 40 40 H 1.08991 * 109.47470 * 184.99960 * 12 11 10 41 41 H 1.08995 * 109.48046 * 59.99599 * 14 13 12 42 42 H 1.09007 * 109.47065 * 299.99668 * 14 13 12 43 43 H 0.96994 * 119.99616 * 359.72717 * 18 17 15 44 44 H 1.09000 * 109.47517 * 180.02562 * 23 7 6 45 45 H 1.09001 * 109.47393 * 300.00021 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5700 -0.7219 1.2488 6 6 4.0795 -1.4434 -0.0004 7 6 3.5695 -0.7221 -1.2497 8 6 4.0800 0.7202 -1.2498 9 8 5.5033 0.7217 -1.3775 10 7 4.0592 -1.4145 -2.4492 11 6 3.5421 -0.7821 -3.6700 12 6 4.1767 -1.4435 -4.8951 13 8 3.7584 -2.8079 -4.9698 14 6 4.2981 -3.5210 -6.0844 15 6 3.7933 -4.9408 -6.0647 16 1 3.1272 -5.2662 -5.2792 17 6 4.1816 -5.8244 -7.0492 18 7 4.9969 -5.4296 -8.0027 19 14 3.5563 -7.5844 -7.0243 20 1 2.6652 -7.7766 -5.8520 21 1 2.7995 -7.8586 -8.2722 22 1 4.7077 -8.5174 -6.9285 23 6 2.0395 -0.7215 -1.2494 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.6767 -0.2075 2.1392 28 1 1.6767 -1.7490 1.2491 29 1 3.9337 0.3057 1.2487 30 1 3.9333 -1.2354 2.1390 31 1 3.7158 -2.4710 -0.0003 32 1 5.1695 -1.4434 -0.0009 33 1 3.6396 1.2614 -2.0873 34 1 3.7985 1.2055 -0.3153 35 1 5.8966 1.6051 -1.3853 36 1 3.8233 -2.3952 -2.4222 37 1 3.7889 0.2797 -3.6617 38 1 2.4597 -0.9032 -3.7115 39 1 5.2625 -1.4006 -4.8096 40 1 3.8620 -0.9172 -5.7961 41 1 5.3864 -3.5211 -6.0234 42 1 3.9862 -3.0377 -7.0104 43 1 5.3218 -4.5158 -8.0155 44 1 1.6761 -0.2081 -2.1395 45 1 1.6758 -1.7491 -1.2492 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385168543.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:31 Heat of formation + Delta-G solvation = -123.574523 kcal Electronic energy + Delta-G solvation = -22013.789287 eV Core-core repulsion = 18837.104057 eV Total energy + Delta-G solvation = -3176.685230 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.19331 -37.04263 -36.30434 -34.86311 -32.97067 -32.47419 -30.36553 -27.58147 -26.65816 -26.14597 -25.79421 -22.69875 -22.43933 -21.03456 -20.71373 -18.72665 -17.38301 -17.01617 -16.21255 -15.74169 -15.48465 -14.99661 -14.70774 -14.38722 -13.95812 -13.74490 -13.71252 -13.50447 -13.23933 -12.64543 -12.56674 -12.50867 -12.22056 -11.94184 -11.82803 -11.54432 -11.37524 -11.17946 -11.07270 -11.01739 -10.69398 -10.49492 -10.37940 -10.17485 -10.10353 -10.05558 -9.80029 -8.80516 -8.59426 -8.19973 -8.04860 -6.43730 -4.11971 3.44071 3.48785 3.63441 4.04549 4.33862 4.46550 4.48544 4.61179 4.76382 4.86745 4.87205 5.02111 5.11337 5.23963 5.27493 5.34368 5.34925 5.40796 5.45989 5.47500 5.56952 5.61408 5.67336 5.71275 5.83515 5.87190 5.88789 5.99856 6.04419 6.09281 6.15094 6.20520 6.30265 6.33107 6.41021 6.82219 7.18296 7.31672 7.64222 7.73847 7.93477 8.22077 8.67459 8.84760 9.58877 10.96772 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.022560 B = 0.003822 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.810989 B = 7324.878225 C = 7802.388158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.090 4.090 3 H 0.068 0.932 4 C -0.116 4.116 5 C -0.119 4.119 6 C -0.104 4.104 7 C 0.121 3.879 8 C 0.088 3.912 9 O -0.549 6.549 10 N -0.663 5.663 11 C 0.066 3.934 12 C 0.062 3.938 13 O -0.389 6.389 14 C 0.188 3.812 15 C -0.595 4.595 16 H 0.060 0.940 17 C 0.016 3.984 18 N -0.913 5.913 19 Si 1.084 2.916 20 H -0.287 1.287 21 H -0.286 1.286 22 H -0.285 1.285 23 C -0.144 4.144 24 H 0.055 0.945 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.078 0.922 33 H 0.038 0.962 34 H 0.049 0.951 35 H 0.367 0.633 36 H 0.353 0.647 37 H 0.074 0.926 38 H 0.034 0.966 39 H 0.047 0.953 40 H 0.036 0.964 41 H -0.004 1.004 42 H -0.007 1.007 43 H 0.268 0.732 44 H 0.066 0.934 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.447 15.033 18.231 24.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.109 4.109 3 H 0.086 0.914 4 C -0.153 4.153 5 C -0.156 4.156 6 C -0.142 4.142 7 C 0.029 3.971 8 C 0.009 3.991 9 O -0.352 6.352 10 N -0.295 5.295 11 C -0.064 4.064 12 C -0.016 4.016 13 O -0.309 6.309 14 C 0.113 3.887 15 C -0.633 4.633 16 H 0.078 0.922 17 C -0.187 4.187 18 N -0.549 5.549 19 Si 0.912 3.088 20 H -0.213 1.213 21 H -0.212 1.212 22 H -0.211 1.211 23 C -0.183 4.183 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.212 0.788 36 H 0.173 0.827 37 H 0.092 0.908 38 H 0.052 0.948 39 H 0.065 0.935 40 H 0.055 0.945 41 H 0.014 0.986 42 H 0.010 0.990 43 H 0.078 0.922 44 H 0.085 0.915 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.989 13.168 17.510 22.469 hybrid contribution -0.786 2.062 0.479 2.258 sum -5.774 15.230 17.988 24.267 Atomic orbital electron populations 1.21840 0.95298 1.01957 1.01438 1.21144 0.95426 0.99412 0.94929 0.91360 1.21635 0.95747 1.00818 0.97130 1.21580 0.95284 1.00856 0.97925 1.21473 1.01929 0.98590 0.92204 1.20896 0.91163 0.93270 0.91778 1.22309 0.81973 0.96094 0.98686 1.86672 1.19412 1.32213 1.96937 1.60509 1.62048 1.07222 0.99674 1.21963 0.96951 0.97845 0.89600 1.22323 0.98409 0.85391 0.95429 1.87815 1.72065 1.20563 1.50456 1.20253 0.92844 0.92155 0.83424 1.21952 1.32516 0.94768 1.14054 0.92175 1.25928 0.94983 1.05538 0.92245 1.70735 1.30742 1.20281 1.33164 0.83337 0.75986 0.73777 0.75730 1.21326 1.21213 1.21145 1.22386 0.96284 1.01700 0.97942 0.92590 0.92831 0.92769 0.92205 0.91852 0.91934 0.91890 0.92008 0.90339 0.94383 0.93344 0.78772 0.82735 0.90810 0.94783 0.93520 0.94538 0.98629 0.98963 0.92223 0.91550 0.91110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.19 37.16 0.34 -0.89 16 2 C -0.09 -0.81 2.45 -90.62 -0.22 -1.03 16 3 H 0.07 0.58 6.56 -51.93 -0.34 0.24 16 4 C -0.12 -1.00 5.20 -26.73 -0.14 -1.14 16 5 C -0.12 -1.10 5.65 -26.73 -0.15 -1.25 16 6 C -0.10 -1.23 4.87 -26.73 -0.13 -1.36 16 7 C 0.12 1.48 0.50 -131.60 -0.07 1.42 16 8 C 0.09 0.95 4.76 37.15 0.18 1.13 16 9 O -0.55 -6.59 12.96 -35.23 -0.46 -7.04 16 10 N -0.66 -10.47 5.83 -99.96 -0.58 -11.05 16 11 C 0.07 1.04 5.25 -3.83 -0.02 1.02 16 12 C 0.06 1.23 6.28 37.16 0.23 1.46 16 13 O -0.39 -9.67 9.94 -35.23 -0.35 -10.02 16 14 C 0.19 5.29 5.00 36.01 0.18 5.47 16 15 C -0.59 -18.08 9.43 -34.44 -0.32 -18.40 16 16 H 0.06 1.83 7.81 -52.49 -0.41 1.42 16 17 C 0.02 0.48 5.46 -17.82 -0.10 0.38 16 18 N -0.91 -28.56 13.65 55.43 0.76 -27.80 16 19 Si 1.08 26.02 29.90 -169.99 -5.08 20.94 16 20 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 22 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 23 C -0.14 -1.61 3.70 -26.73 -0.10 -1.70 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.56 6.31 -51.93 -0.33 0.23 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.08 1.05 7.83 -51.93 -0.41 0.65 16 33 H 0.04 0.40 6.62 -51.93 -0.34 0.06 16 34 H 0.05 0.44 4.83 -51.93 -0.25 0.19 16 35 H 0.37 2.71 9.12 45.56 0.42 3.12 16 36 H 0.35 6.19 8.39 -39.29 -0.33 5.86 16 37 H 0.07 1.04 6.22 -51.92 -0.32 0.72 16 38 H 0.03 0.54 6.57 -51.93 -0.34 0.20 16 39 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.00 -0.12 8.00 -51.93 -0.42 -0.53 16 42 H -0.01 -0.21 8.01 -51.92 -0.42 -0.62 16 43 H 0.27 8.34 7.22 -40.82 -0.29 8.05 16 44 H 0.07 0.77 6.49 -51.93 -0.34 0.43 16 45 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 342.77 15.07 5.17 5.17 Total: -1.00 -33.40 342.77 -8.01 -41.42 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -7.15 Total: 3.28 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: -0.32 Total: -14.88 kcal Atomic # 7 Polarization: -39.03 SS G_CDS: 0.17 Total: -38.85 kcal Atomic # 8 Polarization: -16.26 SS G_CDS: -0.81 Total: -17.07 kcal Atomic # 14 Polarization: 26.02 SS G_CDS: -5.08 Total: 20.94 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.40 -8.01 -41.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385168543.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.158 kcal (2) G-P(sol) polarization free energy of solvation -33.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds