Wall clock time and date at job start Mon Mar 30 2020 04:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47246 * 2 1 4 4 C 1.52997 * 109.46915 * 120.00374 * 2 1 3 5 5 C 1.53007 * 109.46844 * 179.97438 * 4 2 1 6 6 C 1.52994 * 109.47270 * 299.99886 * 5 4 2 7 7 C 1.53008 * 109.47099 * 59.99954 * 6 5 4 8 8 C 1.52995 * 109.46779 * 60.00076 * 7 6 5 9 9 O 1.42901 * 109.47310 * 65.42630 * 8 7 6 10 10 N 1.46906 * 109.47046 * 179.97438 * 7 6 5 11 11 C 1.46893 * 110.99720 * 177.61567 * 10 7 6 12 12 C 1.53001 * 109.47199 * 174.64089 * 11 10 7 13 13 O 1.42905 * 109.46547 * 65.00275 * 12 11 10 14 14 C 1.42897 * 113.99770 * 180.02562 * 13 12 11 15 15 C 1.50701 * 109.47453 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99725 * 359.97438 * 15 14 13 17 17 C 1.37872 * 120.00695 * 179.97438 * 15 14 13 18 18 N 1.31524 * 119.99710 * 0.27252 * 17 15 14 19 19 Si 1.86793 * 120.00452 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47102 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.47278 * 119.99716 * 19 17 15 22 22 H 1.48501 * 109.47223 * 239.99879 * 19 17 15 23 23 C 1.52993 * 109.47203 * 300.00022 * 7 6 5 24 24 H 1.08993 * 109.47246 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46694 * 300.00071 * 1 2 3 26 26 H 1.08998 * 109.47045 * 59.99664 * 1 2 3 27 27 H 1.08999 * 109.47076 * 299.99321 * 4 2 1 28 28 H 1.08997 * 109.47381 * 60.00256 * 4 2 1 29 29 H 1.09005 * 109.46982 * 60.00242 * 5 4 2 30 30 H 1.08998 * 109.46974 * 179.97438 * 5 4 2 31 31 H 1.09005 * 109.47409 * 300.00095 * 6 5 4 32 32 H 1.08997 * 109.47550 * 179.97438 * 6 5 4 33 33 H 1.09002 * 109.46831 * 185.42162 * 8 7 6 34 34 H 1.09002 * 109.47730 * 305.42154 * 8 7 6 35 35 H 0.96703 * 113.99963 * 179.97438 * 9 8 7 36 36 H 1.00903 * 110.99859 * 53.66313 * 10 7 6 37 37 H 1.09008 * 109.47291 * 54.64559 * 11 10 7 38 38 H 1.08996 * 109.47275 * 294.64642 * 11 10 7 39 39 H 1.08997 * 109.47394 * 305.00989 * 12 11 10 40 40 H 1.08991 * 109.47470 * 184.99960 * 12 11 10 41 41 H 1.08995 * 109.48046 * 59.99599 * 14 13 12 42 42 H 1.09007 * 109.47065 * 299.99668 * 14 13 12 43 43 H 0.96994 * 119.99616 * 359.72717 * 18 17 15 44 44 H 1.09000 * 109.47517 * 180.02562 * 23 7 6 45 45 H 1.09001 * 109.47393 * 300.00021 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5700 -0.7219 1.2488 6 6 4.0795 -1.4434 -0.0004 7 6 3.5695 -0.7221 -1.2497 8 6 4.0800 0.7202 -1.2498 9 8 5.5033 0.7217 -1.3775 10 7 4.0592 -1.4145 -2.4492 11 6 3.5421 -0.7821 -3.6700 12 6 4.1767 -1.4435 -4.8951 13 8 3.7584 -2.8079 -4.9698 14 6 4.2981 -3.5210 -6.0844 15 6 3.7933 -4.9408 -6.0647 16 1 3.1272 -5.2662 -5.2792 17 6 4.1816 -5.8244 -7.0492 18 7 4.9969 -5.4296 -8.0027 19 14 3.5563 -7.5844 -7.0243 20 1 2.6652 -7.7766 -5.8520 21 1 2.7995 -7.8586 -8.2722 22 1 4.7077 -8.5174 -6.9285 23 6 2.0395 -0.7215 -1.2494 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.6767 -0.2075 2.1392 28 1 1.6767 -1.7490 1.2491 29 1 3.9337 0.3057 1.2487 30 1 3.9333 -1.2354 2.1390 31 1 3.7158 -2.4710 -0.0003 32 1 5.1695 -1.4434 -0.0009 33 1 3.6396 1.2614 -2.0873 34 1 3.7985 1.2055 -0.3153 35 1 5.8966 1.6051 -1.3853 36 1 3.8233 -2.3952 -2.4222 37 1 3.7889 0.2797 -3.6617 38 1 2.4597 -0.9032 -3.7115 39 1 5.2625 -1.4006 -4.8096 40 1 3.8620 -0.9172 -5.7961 41 1 5.3864 -3.5211 -6.0234 42 1 3.9862 -3.0377 -7.0104 43 1 5.3218 -4.5158 -8.0155 44 1 1.6761 -0.2081 -2.1395 45 1 1.6758 -1.7491 -1.2492 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385168543.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:30 Heat of formation + Delta-G solvation = -148.626298 kcal Electronic energy + Delta-G solvation = -22014.875613 eV Core-core repulsion = 18837.104057 eV Total energy + Delta-G solvation = -3177.771557 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.11902 -38.86765 -37.17984 -36.14155 -35.11432 -33.36382 -31.56790 -29.18224 -28.05330 -27.26962 -26.82902 -24.77828 -23.73504 -22.16367 -21.57997 -19.63763 -19.23041 -18.25508 -17.58299 -17.20530 -17.05974 -16.06119 -15.76195 -15.63713 -15.50957 -15.26971 -14.80507 -14.69500 -14.44046 -14.17214 -13.80113 -13.44375 -13.26696 -13.24121 -13.05652 -12.86983 -12.71513 -12.57049 -12.51800 -11.99055 -11.95954 -11.90277 -11.79681 -11.35429 -11.24887 -10.95114 -10.85540 -10.84208 -10.63393 -10.37429 -9.24659 -8.85716 -6.56566 1.51036 1.61395 1.80305 2.47783 3.00537 3.01891 3.06771 3.42657 3.66441 3.78618 3.98363 4.00059 4.14459 4.19550 4.23810 4.32276 4.38422 4.42660 4.46915 4.50479 4.56196 4.63003 4.68013 4.72017 4.74458 4.81388 4.86733 4.91368 4.97417 5.04458 5.06572 5.15728 5.28448 5.33081 5.36887 5.43898 5.54773 5.64864 5.90060 6.17400 6.30938 6.36568 6.62697 7.03466 7.24754 8.55497 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.022560 B = 0.003822 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.810989 B = 7324.878225 C = 7802.388158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 H 0.082 0.918 4 C -0.113 4.113 5 C -0.112 4.112 6 C -0.102 4.102 7 C 0.116 3.884 8 C 0.089 3.911 9 O -0.574 6.574 10 N -0.678 5.678 11 C 0.078 3.922 12 C 0.056 3.944 13 O -0.400 6.400 14 C 0.198 3.802 15 C -0.622 4.622 16 H 0.053 0.947 17 C -0.029 4.029 18 N -0.929 5.929 19 Si 1.134 2.866 20 H -0.272 1.272 21 H -0.270 1.270 22 H -0.272 1.272 23 C -0.138 4.138 24 H 0.047 0.953 25 H 0.069 0.931 26 H 0.053 0.947 27 H 0.079 0.921 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.048 0.952 32 H 0.058 0.942 33 H 0.043 0.957 34 H 0.073 0.927 35 H 0.387 0.613 36 H 0.337 0.663 37 H 0.099 0.901 38 H 0.035 0.965 39 H 0.038 0.962 40 H 0.047 0.953 41 H -0.021 1.021 42 H -0.018 1.018 43 H 0.256 0.744 44 H 0.062 0.938 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.496 15.833 19.688 26.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.104 4.104 3 H 0.100 0.900 4 C -0.151 4.151 5 C -0.150 4.150 6 C -0.140 4.140 7 C 0.025 3.975 8 C 0.011 3.989 9 O -0.380 6.380 10 N -0.308 5.308 11 C -0.051 4.051 12 C -0.021 4.021 13 O -0.320 6.320 14 C 0.123 3.877 15 C -0.659 4.659 16 H 0.072 0.928 17 C -0.226 4.226 18 N -0.565 5.565 19 Si 0.953 3.047 20 H -0.197 1.197 21 H -0.196 1.196 22 H -0.197 1.197 23 C -0.178 4.178 24 H 0.066 0.934 25 H 0.088 0.912 26 H 0.072 0.928 27 H 0.098 0.902 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.091 0.909 35 H 0.235 0.765 36 H 0.155 0.845 37 H 0.117 0.883 38 H 0.053 0.947 39 H 0.057 0.943 40 H 0.065 0.935 41 H -0.004 1.004 42 H -0.001 1.001 43 H 0.065 0.935 44 H 0.080 0.920 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.028 14.034 18.985 24.366 hybrid contribution -0.406 1.911 0.054 1.955 sum -6.433 15.946 19.039 25.654 Atomic orbital electron populations 1.21827 0.94667 1.01693 1.02219 1.21133 0.95915 0.99677 0.93700 0.90020 1.21627 0.95075 1.00612 0.97757 1.21545 0.95775 1.01042 0.96614 1.21437 1.00611 0.98378 0.93549 1.21065 0.92006 0.94104 0.90296 1.22333 0.81622 0.94792 1.00128 1.86623 1.20038 1.34335 1.97053 1.60559 1.62770 1.06544 1.00966 1.21878 0.96564 0.98510 0.88138 1.22634 0.98375 0.83112 0.98019 1.87782 1.72021 1.23162 1.49039 1.19937 0.91690 0.92044 0.84059 1.22291 1.33025 0.96188 1.14433 0.92847 1.27643 0.93999 1.09845 0.91156 1.70866 1.31823 1.19723 1.34112 0.82745 0.76342 0.68643 0.76973 1.19654 1.19551 1.19716 1.22302 0.95311 1.00946 0.99202 0.93413 0.91245 0.92810 0.90197 0.92724 0.90901 0.91098 0.93354 0.92349 0.93871 0.90948 0.76508 0.84548 0.88283 0.94658 0.94346 0.93451 1.00373 1.00075 0.93529 0.91955 0.92956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.19 71.98 0.66 -1.46 16 2 C -0.09 -1.33 2.45 -10.79 -0.03 -1.36 16 3 H 0.08 1.10 6.56 -2.39 -0.02 1.08 16 4 C -0.11 -1.69 5.20 30.60 0.16 -1.53 16 5 C -0.11 -1.85 5.65 30.59 0.17 -1.68 16 6 C -0.10 -2.37 4.87 30.60 0.15 -2.22 16 7 C 0.12 2.77 0.50 3.53 0.00 2.77 16 8 C 0.09 1.75 4.76 71.98 0.34 2.09 16 9 O -0.57 -12.86 12.96 -148.98 -1.93 -14.80 16 10 N -0.68 -21.61 5.83 -470.18 -2.74 -24.35 16 11 C 0.08 2.46 5.25 86.31 0.45 2.91 16 12 C 0.06 2.22 6.28 71.98 0.45 2.67 16 13 O -0.40 -20.42 9.94 -148.98 -1.48 -21.91 16 14 C 0.20 11.52 5.00 71.24 0.36 11.88 16 15 C -0.62 -38.50 9.43 25.60 0.24 -38.25 16 16 H 0.05 3.30 7.81 -2.91 -0.02 3.28 16 17 C -0.03 -1.74 5.46 84.65 0.46 -1.28 16 18 N -0.93 -58.68 13.65 21.45 0.29 -58.39 16 19 Si 1.13 51.56 29.90 68.60 2.05 53.61 16 20 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 21 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 22 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 23 C -0.14 -2.96 3.70 30.59 0.11 -2.85 16 24 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.07 1.07 6.31 -2.38 -0.02 1.06 16 30 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 32 H 0.06 1.58 7.83 -2.39 -0.02 1.56 16 33 H 0.04 0.80 6.62 -2.39 -0.02 0.79 16 34 H 0.07 1.08 4.83 -2.39 -0.01 1.07 16 35 H 0.39 4.93 9.12 -74.06 -0.68 4.25 16 36 H 0.34 12.30 8.39 -89.69 -0.75 11.55 16 37 H 0.10 2.62 6.22 -2.38 -0.01 2.61 16 38 H 0.04 1.11 6.57 -2.39 -0.02 1.09 16 39 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 41 H -0.02 -1.29 8.00 -2.39 -0.02 -1.31 16 42 H -0.02 -1.09 8.01 -2.38 -0.02 -1.11 16 43 H 0.26 16.36 7.22 -92.71 -0.67 15.69 16 44 H 0.06 1.38 6.49 -2.39 -0.02 1.36 16 45 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -72.38 342.77 -0.62 -73.00 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: -0.35 Total: 21.13 kcal Atomic # 6 Polarization: -31.84 SS G_CDS: 3.54 Total: -28.30 kcal Atomic # 7 Polarization: -80.29 SS G_CDS: -2.45 Total: -82.74 kcal Atomic # 8 Polarization: -33.29 SS G_CDS: -3.41 Total: -36.70 kcal Atomic # 14 Polarization: 51.56 SS G_CDS: 2.05 Total: 53.61 kcal Total: -72.38 -0.62 -73.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385168543.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.626 kcal (2) G-P(sol) polarization free energy of solvation -72.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds