Wall clock time and date at job start Mon Mar 30 2020 04:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08991 * 109.47207 * 2 1 4 4 C 1.53001 * 109.46721 * 240.00136 * 2 1 3 5 5 C 1.53000 * 109.47040 * 299.99780 * 4 2 1 6 6 C 1.53005 * 109.47397 * 300.00082 * 5 4 2 7 7 C 1.52998 * 109.46597 * 60.00124 * 6 5 4 8 8 O 1.42903 * 109.47189 * 60.00339 * 7 6 5 9 9 C 1.53000 * 109.46869 * 179.97438 * 7 6 5 10 10 N 1.46901 * 109.47097 * 305.00141 * 9 7 6 11 11 C 1.46903 * 110.99894 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47282 * 179.97438 * 11 10 9 13 13 O 1.42908 * 109.46989 * 64.99874 * 12 11 10 14 14 C 1.42897 * 114.00223 * 179.97438 * 13 12 11 15 15 C 1.50691 * 109.47643 * 179.97438 * 14 13 12 16 16 H 1.08010 * 119.99608 * 0.02562 * 15 14 13 17 17 C 1.37879 * 120.00632 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99689 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00248 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46900 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46995 * 120.00196 * 19 17 15 22 22 H 1.48498 * 109.47295 * 240.00010 * 19 17 15 23 23 C 1.52999 * 109.47463 * 299.99822 * 7 6 5 24 24 H 1.08999 * 109.47170 * 288.76186 * 1 2 3 25 25 H 1.08999 * 109.47006 * 48.76252 * 1 2 3 26 26 H 1.09002 * 109.47222 * 168.76372 * 1 2 3 27 27 H 1.08994 * 109.47181 * 59.99862 * 4 2 1 28 28 H 1.08997 * 109.46980 * 180.02562 * 4 2 1 29 29 H 1.09001 * 109.47363 * 60.00419 * 5 4 2 30 30 H 1.09006 * 109.46865 * 180.02562 * 5 4 2 31 31 H 1.09001 * 109.47140 * 300.00474 * 6 5 4 32 32 H 1.09001 * 109.47177 * 180.02562 * 6 5 4 33 33 H 0.96694 * 114.00459 * 59.99664 * 8 7 6 34 34 H 1.09003 * 109.47195 * 65.00459 * 9 7 6 35 35 H 1.09002 * 109.47057 * 184.99848 * 9 7 6 36 36 H 1.00900 * 111.00121 * 56.05081 * 10 9 7 37 37 H 1.09004 * 109.47234 * 299.99809 * 11 10 9 38 38 H 1.09001 * 109.47441 * 60.00006 * 11 10 9 39 39 H 1.08998 * 109.47358 * 184.99521 * 12 11 10 40 40 H 1.08996 * 109.47536 * 305.00224 * 12 11 10 41 41 H 1.09006 * 109.47357 * 300.00788 * 14 13 12 42 42 H 1.09004 * 109.46790 * 60.00087 * 14 13 12 43 43 H 0.96993 * 119.99895 * 179.97438 * 18 17 15 44 44 H 1.09001 * 109.47230 * 180.02562 * 23 7 6 45 45 H 1.08997 * 109.46898 * 300.00375 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5299 -2.1637 -1.2493 6 6 2.0400 -2.8851 0.0000 7 6 1.5300 -2.1638 1.2492 8 8 0.1009 -2.1638 1.2492 9 6 2.0395 -2.8854 2.4984 10 7 1.6503 -4.3007 2.4393 11 6 2.1242 -5.0270 3.6250 12 6 1.7003 -6.4938 3.5279 13 8 2.3607 -7.1081 2.4193 14 6 2.0329 -8.4872 2.2389 15 6 2.7808 -9.0298 1.0486 16 1 3.4410 -8.3859 0.4863 17 6 2.6234 -10.3485 0.6778 18 7 1.8199 -11.1326 1.3628 19 14 3.5512 -11.0212 -0.7973 20 1 4.3837 -9.9446 -1.3914 21 1 4.4257 -12.1403 -0.3636 22 1 2.5822 -11.5137 -1.8090 23 6 2.0400 -0.7213 1.2492 24 1 -0.3633 0.3305 0.9730 25 1 -0.3633 0.6774 -0.7728 26 1 -0.3634 -1.0080 -0.2002 27 1 1.6766 -0.2074 -2.1392 28 1 3.1299 -0.7217 -1.2491 29 1 0.4399 -2.1638 -1.2492 30 1 1.8936 -2.6777 -2.1391 31 1 3.1300 -2.8850 0.0000 32 1 1.6770 -3.9129 -0.0003 33 1 -0.2924 -3.0471 1.2492 34 1 3.1258 -2.8089 2.5446 35 1 1.6048 -2.4258 3.3861 36 1 1.9872 -4.7333 1.5922 37 1 3.2112 -4.9653 3.6785 38 1 1.6906 -4.5824 4.5208 39 1 1.9738 -7.0127 4.4466 40 1 0.6213 -6.5516 3.3854 41 1 2.3134 -9.0471 3.1310 42 1 0.9606 -8.5866 2.0699 43 1 1.7088 -12.0601 1.1018 44 1 1.6770 -0.2076 2.1394 45 1 3.1300 -0.7213 1.2492 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385206774.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:22 Heat of formation + Delta-G solvation = -122.345425 kcal Electronic energy + Delta-G solvation = -21825.586129 eV Core-core repulsion = 18648.954197 eV Total energy + Delta-G solvation = -3176.631932 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.11054 -37.21397 -35.83728 -34.61403 -32.73472 -31.78140 -30.99260 -28.58742 -26.81133 -26.59028 -24.46241 -22.66816 -22.34484 -21.28964 -20.77705 -18.90838 -16.69587 -16.38605 -16.21866 -15.87115 -15.39941 -15.04950 -14.58524 -14.39768 -14.08244 -13.90969 -13.74654 -13.41841 -13.14395 -12.83806 -12.34413 -12.21992 -11.97700 -11.90177 -11.72325 -11.60951 -11.26157 -11.09881 -10.99820 -10.81709 -10.78280 -10.64170 -10.51819 -10.42175 -10.07128 -9.84428 -9.44706 -9.12113 -8.85981 -8.30178 -8.20243 -6.13431 -4.15370 3.27037 3.33676 3.39488 4.18474 4.27944 4.32600 4.59689 4.69167 4.79097 4.90636 5.01908 5.14945 5.21498 5.23207 5.31036 5.33104 5.44886 5.54660 5.55990 5.65271 5.69316 5.70865 5.85301 5.89658 5.91788 5.96758 6.04177 6.05197 6.15830 6.20566 6.25045 6.28193 6.30828 6.37365 6.69416 7.08088 7.12363 7.40939 7.56156 7.76405 7.84246 8.12529 8.54358 8.97826 9.49712 10.98124 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.022163 B = 0.003766 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.087438 B = 7433.887215 C = 8274.917351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.086 4.086 3 H 0.061 0.939 4 C -0.115 4.115 5 C -0.116 4.116 6 C -0.151 4.151 7 C 0.144 3.856 8 O -0.546 6.546 9 C 0.030 3.970 10 N -0.689 5.689 11 C 0.067 3.933 12 C 0.062 3.938 13 O -0.400 6.400 14 C 0.197 3.803 15 C -0.515 4.515 16 H 0.066 0.934 17 C 0.056 3.944 18 N -0.898 5.898 19 Si 0.907 3.093 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.282 1.282 23 C -0.100 4.100 24 H 0.049 0.951 25 H 0.034 0.966 26 H 0.090 0.910 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.377 0.623 34 H 0.033 0.967 35 H 0.075 0.925 36 H 0.355 0.645 37 H 0.034 0.966 38 H 0.075 0.925 39 H 0.040 0.960 40 H 0.047 0.953 41 H 0.004 0.996 42 H 0.006 0.994 43 H 0.264 0.736 44 H 0.067 0.933 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.927 20.856 -0.492 20.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.104 4.104 3 H 0.080 0.920 4 C -0.152 4.152 5 C -0.153 4.153 6 C -0.189 4.189 7 C 0.103 3.897 8 O -0.353 6.353 9 C -0.099 4.099 10 N -0.323 5.323 11 C -0.062 4.062 12 C -0.016 4.016 13 O -0.320 6.320 14 C 0.123 3.877 15 C -0.553 4.553 16 H 0.084 0.916 17 C -0.145 4.145 18 N -0.537 5.537 19 Si 0.734 3.266 20 H -0.195 1.195 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.138 4.138 24 H 0.068 0.932 25 H 0.053 0.947 26 H 0.108 0.892 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.226 0.774 34 H 0.051 0.949 35 H 0.094 0.906 36 H 0.176 0.824 37 H 0.052 0.948 38 H 0.093 0.907 39 H 0.059 0.941 40 H 0.065 0.935 41 H 0.022 0.978 42 H 0.024 0.976 43 H 0.073 0.927 44 H 0.085 0.915 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.392 21.504 -0.346 21.551 hybrid contribution 1.240 -1.387 -0.571 1.946 sum -0.152 20.117 -0.917 20.138 Atomic orbital electron populations 1.22060 0.94287 1.03567 1.00425 1.21004 0.97091 0.98080 0.94227 0.92044 1.21575 1.00076 0.96046 0.97542 1.21491 1.01703 0.95000 0.97145 1.22246 1.01195 1.00195 0.95225 1.21042 0.81859 0.94431 0.92384 1.86586 1.18222 1.33957 1.96540 1.22674 0.98065 0.90046 0.99158 1.60509 1.64010 1.01453 1.06354 1.21937 0.97852 0.93162 0.93287 1.22300 0.96815 0.91683 0.90835 1.87781 1.68602 1.28052 1.47592 1.20179 0.95534 0.75556 0.96444 1.21081 1.26549 0.95359 1.12310 0.91610 1.24949 0.95597 0.96506 0.97434 1.69970 1.37147 1.06598 1.39961 0.86298 0.79516 0.78856 0.81924 1.19521 1.20850 1.20788 1.21569 0.99819 0.93835 0.98601 0.93201 0.94722 0.89158 0.92279 0.92453 0.90861 0.92275 0.91553 0.90527 0.77352 0.94921 0.90643 0.82376 0.94794 0.90694 0.94141 0.93512 0.97835 0.97601 0.92682 0.91466 0.91182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 7.81 37.16 0.29 -1.19 16 2 C -0.09 -0.81 3.20 -90.62 -0.29 -1.10 16 3 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 4 C -0.11 -1.08 5.45 -26.73 -0.15 -1.22 16 5 C -0.12 -1.20 5.59 -26.73 -0.15 -1.35 16 6 C -0.15 -1.68 4.46 -26.73 -0.12 -1.80 16 7 C 0.14 1.54 0.79 -90.62 -0.07 1.47 16 8 O -0.55 -6.15 8.77 -35.23 -0.31 -6.46 16 9 C 0.03 0.36 4.93 -3.82 -0.02 0.34 16 10 N -0.69 -9.57 6.02 -113.77 -0.68 -10.26 16 11 C 0.07 0.99 6.10 -3.83 -0.02 0.96 16 12 C 0.06 1.13 6.28 37.16 0.23 1.36 16 13 O -0.40 -9.38 9.85 -35.23 -0.35 -9.73 16 14 C 0.20 5.36 5.69 36.00 0.20 5.56 16 15 C -0.51 -15.00 9.43 -34.44 -0.32 -15.33 16 16 H 0.07 1.90 7.81 -52.48 -0.41 1.49 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -26.76 13.29 55.43 0.74 -26.02 16 19 Si 0.91 21.67 29.54 -169.99 -5.02 16.65 16 20 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 C -0.10 -0.98 4.59 -26.73 -0.12 -1.10 16 24 H 0.05 0.53 8.09 -51.93 -0.42 0.11 16 25 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.09 0.99 3.79 -51.93 -0.20 0.79 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.78 5.94 -51.93 -0.31 0.47 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.08 0.96 6.51 -51.93 -0.34 0.62 16 33 H 0.38 4.10 8.66 45.56 0.39 4.50 16 34 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.36 5.52 6.17 -39.29 -0.24 5.27 16 37 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.00 0.11 8.14 -51.93 -0.42 -0.31 16 42 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 43 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 44 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 344.11 15.07 5.19 5.19 Total: -1.00 -29.79 344.11 -8.49 -38.28 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -7.42 Total: 4.24 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: -0.63 Total: -11.89 kcal Atomic # 7 Polarization: -36.34 SS G_CDS: 0.05 Total: -36.28 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: -0.66 Total: -16.18 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.79 -8.49 -38.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385206774.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.061 kcal (2) G-P(sol) polarization free energy of solvation -29.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds