Wall clock time and date at job start Mon Mar 30 2020 04:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08991 * 109.47207 * 2 1 4 4 C 1.53001 * 109.46721 * 240.00136 * 2 1 3 5 5 C 1.53000 * 109.47040 * 299.99780 * 4 2 1 6 6 C 1.53005 * 109.47397 * 300.00082 * 5 4 2 7 7 C 1.52998 * 109.46597 * 60.00124 * 6 5 4 8 8 O 1.42903 * 109.47189 * 60.00339 * 7 6 5 9 9 C 1.53000 * 109.46869 * 179.97438 * 7 6 5 10 10 N 1.46901 * 109.47097 * 305.00141 * 9 7 6 11 11 C 1.46903 * 110.99894 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47282 * 179.97438 * 11 10 9 13 13 O 1.42908 * 109.46989 * 64.99874 * 12 11 10 14 14 C 1.42897 * 114.00223 * 179.97438 * 13 12 11 15 15 C 1.50691 * 109.47643 * 179.97438 * 14 13 12 16 16 H 1.08010 * 119.99608 * 0.02562 * 15 14 13 17 17 C 1.37879 * 120.00632 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99689 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00248 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46900 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46995 * 120.00196 * 19 17 15 22 22 H 1.48498 * 109.47295 * 240.00010 * 19 17 15 23 23 C 1.52999 * 109.47463 * 299.99822 * 7 6 5 24 24 H 1.08999 * 109.47170 * 288.76186 * 1 2 3 25 25 H 1.08999 * 109.47006 * 48.76252 * 1 2 3 26 26 H 1.09002 * 109.47222 * 168.76372 * 1 2 3 27 27 H 1.08994 * 109.47181 * 59.99862 * 4 2 1 28 28 H 1.08997 * 109.46980 * 180.02562 * 4 2 1 29 29 H 1.09001 * 109.47363 * 60.00419 * 5 4 2 30 30 H 1.09006 * 109.46865 * 180.02562 * 5 4 2 31 31 H 1.09001 * 109.47140 * 300.00474 * 6 5 4 32 32 H 1.09001 * 109.47177 * 180.02562 * 6 5 4 33 33 H 0.96694 * 114.00459 * 59.99664 * 8 7 6 34 34 H 1.09003 * 109.47195 * 65.00459 * 9 7 6 35 35 H 1.09002 * 109.47057 * 184.99848 * 9 7 6 36 36 H 1.00900 * 111.00121 * 56.05081 * 10 9 7 37 37 H 1.09004 * 109.47234 * 299.99809 * 11 10 9 38 38 H 1.09001 * 109.47441 * 60.00006 * 11 10 9 39 39 H 1.08998 * 109.47358 * 184.99521 * 12 11 10 40 40 H 1.08996 * 109.47536 * 305.00224 * 12 11 10 41 41 H 1.09006 * 109.47357 * 300.00788 * 14 13 12 42 42 H 1.09004 * 109.46790 * 60.00087 * 14 13 12 43 43 H 0.96993 * 119.99895 * 179.97438 * 18 17 15 44 44 H 1.09001 * 109.47230 * 180.02562 * 23 7 6 45 45 H 1.08997 * 109.46898 * 300.00375 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5299 -2.1637 -1.2493 6 6 2.0400 -2.8851 0.0000 7 6 1.5300 -2.1638 1.2492 8 8 0.1009 -2.1638 1.2492 9 6 2.0395 -2.8854 2.4984 10 7 1.6503 -4.3007 2.4393 11 6 2.1242 -5.0270 3.6250 12 6 1.7003 -6.4938 3.5279 13 8 2.3607 -7.1081 2.4193 14 6 2.0329 -8.4872 2.2389 15 6 2.7808 -9.0298 1.0486 16 1 3.4410 -8.3859 0.4863 17 6 2.6234 -10.3485 0.6778 18 7 1.8199 -11.1326 1.3628 19 14 3.5512 -11.0212 -0.7973 20 1 4.3837 -9.9446 -1.3914 21 1 4.4257 -12.1403 -0.3636 22 1 2.5822 -11.5137 -1.8090 23 6 2.0400 -0.7213 1.2492 24 1 -0.3633 0.3305 0.9730 25 1 -0.3633 0.6774 -0.7728 26 1 -0.3634 -1.0080 -0.2002 27 1 1.6766 -0.2074 -2.1392 28 1 3.1299 -0.7217 -1.2491 29 1 0.4399 -2.1638 -1.2492 30 1 1.8936 -2.6777 -2.1391 31 1 3.1300 -2.8850 0.0000 32 1 1.6770 -3.9129 -0.0003 33 1 -0.2924 -3.0471 1.2492 34 1 3.1258 -2.8089 2.5446 35 1 1.6048 -2.4258 3.3861 36 1 1.9872 -4.7333 1.5922 37 1 3.2112 -4.9653 3.6785 38 1 1.6906 -4.5824 4.5208 39 1 1.9738 -7.0127 4.4466 40 1 0.6213 -6.5516 3.3854 41 1 2.3134 -9.0471 3.1310 42 1 0.9606 -8.5866 2.0699 43 1 1.7088 -12.0601 1.1018 44 1 1.6770 -0.2076 2.1394 45 1 3.1300 -0.7213 1.2492 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385206774.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:21 Heat of formation + Delta-G solvation = -142.637941 kcal Electronic energy + Delta-G solvation = -21826.466079 eV Core-core repulsion = 18648.954197 eV Total energy + Delta-G solvation = -3177.511882 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.97388 -38.85001 -36.96818 -35.71089 -34.84249 -32.68317 -32.00340 -30.07277 -28.63805 -27.41449 -25.51576 -24.52985 -23.52501 -22.57160 -21.65625 -19.71607 -18.66919 -17.61636 -17.38253 -17.16677 -16.87537 -16.45771 -16.14255 -15.53369 -15.30475 -15.17656 -14.74989 -14.44719 -14.41649 -14.01678 -13.59802 -13.40812 -13.21704 -13.01334 -12.96667 -12.76721 -12.68838 -12.55532 -12.47207 -12.32828 -11.95163 -11.86904 -11.78716 -11.31783 -11.27056 -11.24220 -10.88968 -10.68632 -10.34904 -10.23748 -9.41066 -8.32911 -6.45271 1.39915 1.41050 1.55518 2.33904 3.01253 3.12211 3.21064 3.41304 3.74152 3.84563 3.92678 4.15096 4.21726 4.31455 4.33421 4.40843 4.49762 4.51519 4.55429 4.61561 4.73728 4.77462 4.81234 4.84883 4.92042 4.95212 5.02854 5.05899 5.12694 5.17561 5.18414 5.22179 5.38181 5.43236 5.47955 5.54152 5.55231 5.87773 5.94853 6.01785 6.35162 6.52115 6.80717 6.95034 7.26828 8.79675 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.022163 B = 0.003766 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.087438 B = 7433.887215 C = 8274.917351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.085 4.085 3 H 0.074 0.926 4 C -0.112 4.112 5 C -0.115 4.115 6 C -0.148 4.148 7 C 0.148 3.852 8 O -0.549 6.549 9 C 0.034 3.966 10 N -0.693 5.693 11 C 0.076 3.924 12 C 0.054 3.946 13 O -0.409 6.409 14 C 0.211 3.789 15 C -0.546 4.546 16 H 0.062 0.938 17 C 0.006 3.994 18 N -0.931 5.931 19 Si 0.983 3.017 20 H -0.264 1.264 21 H -0.272 1.272 22 H -0.272 1.272 23 C -0.100 4.100 24 H 0.042 0.958 25 H 0.040 0.960 26 H 0.080 0.920 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.377 0.623 34 H 0.036 0.964 35 H 0.081 0.919 36 H 0.345 0.655 37 H 0.032 0.968 38 H 0.103 0.897 39 H 0.047 0.953 40 H 0.045 0.955 41 H -0.016 1.016 42 H -0.015 1.015 43 H 0.271 0.729 44 H 0.068 0.932 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.103 21.959 -1.163 21.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.103 4.103 3 H 0.092 0.908 4 C -0.150 4.150 5 C -0.152 4.152 6 C -0.186 4.186 7 C 0.107 3.893 8 O -0.357 6.357 9 C -0.095 4.095 10 N -0.326 5.326 11 C -0.053 4.053 12 C -0.023 4.023 13 O -0.329 6.329 14 C 0.136 3.864 15 C -0.584 4.584 16 H 0.081 0.919 17 C -0.192 4.192 18 N -0.570 5.570 19 Si 0.805 3.195 20 H -0.187 1.187 21 H -0.198 1.198 22 H -0.197 1.197 23 C -0.138 4.138 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.098 0.902 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.226 0.774 34 H 0.055 0.945 35 H 0.099 0.901 36 H 0.164 0.836 37 H 0.050 0.950 38 H 0.121 0.879 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.002 0.998 42 H 0.003 0.997 43 H 0.079 0.921 44 H 0.087 0.913 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.576 22.635 -0.995 22.664 hybrid contribution 0.927 -1.688 -0.290 1.947 sum 0.351 20.946 -1.286 20.989 Atomic orbital electron populations 1.22015 0.94856 1.03020 1.00186 1.21016 0.96547 0.98723 0.94025 0.90801 1.21560 1.00374 0.95147 0.97884 1.21474 1.01372 0.95780 0.96602 1.22205 1.01032 0.99354 0.96040 1.21045 0.81571 0.95039 0.91626 1.86598 1.18544 1.34000 1.96509 1.22706 0.98343 0.88584 0.99882 1.60528 1.64051 1.02499 1.05499 1.21891 0.97896 0.90814 0.94719 1.22605 0.96532 0.93743 0.89429 1.87746 1.69257 1.26064 1.49794 1.19789 0.93965 0.77379 0.95219 1.21407 1.27403 0.96247 1.13335 0.91941 1.25955 0.96219 0.96501 1.00540 1.70075 1.38122 1.07198 1.41609 0.85145 0.78263 0.78242 0.77810 1.18750 1.19755 1.19688 1.21597 1.00410 0.92873 0.98907 0.93916 0.94092 0.90199 0.91517 0.91914 0.91383 0.92422 0.91659 0.92363 0.77371 0.94538 0.90084 0.83577 0.94973 0.87923 0.93476 0.93682 0.99823 0.99675 0.92055 0.91279 0.90206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 7.81 71.98 0.56 -2.16 16 2 C -0.08 -1.44 3.20 -10.79 -0.03 -1.48 16 3 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 4 C -0.11 -1.91 5.45 30.59 0.17 -1.74 16 5 C -0.11 -2.29 5.59 30.60 0.17 -2.12 16 6 C -0.15 -3.25 4.46 30.60 0.14 -3.11 16 7 C 0.15 3.02 0.79 -10.79 -0.01 3.01 16 8 O -0.55 -12.00 8.77 -148.98 -1.31 -13.30 16 9 C 0.03 0.75 4.93 86.30 0.43 1.18 16 10 N -0.69 -18.79 6.02 -513.87 -3.09 -21.88 16 11 C 0.08 2.15 6.10 86.30 0.53 2.68 16 12 C 0.05 1.98 6.28 71.98 0.45 2.43 16 13 O -0.41 -19.50 9.85 -148.98 -1.47 -20.97 16 14 C 0.21 11.86 5.69 71.23 0.41 12.26 16 15 C -0.55 -32.32 9.43 25.60 0.24 -32.08 16 16 H 0.06 3.64 7.81 -2.91 -0.02 3.62 16 17 C 0.01 0.36 5.46 84.66 0.46 0.83 16 18 N -0.93 -55.90 13.29 21.45 0.28 -55.61 16 19 Si 0.98 44.10 29.54 68.60 2.03 46.13 16 20 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 21 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 22 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 23 C -0.10 -1.77 4.59 30.59 0.14 -1.63 16 24 H 0.04 0.85 8.09 -2.39 -0.02 0.83 16 25 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.08 1.69 3.79 -2.39 -0.01 1.68 16 27 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.07 1.43 5.94 -2.39 -0.01 1.41 16 30 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 31 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.06 1.49 6.51 -2.39 -0.02 1.47 16 33 H 0.38 8.16 8.66 -74.06 -0.64 7.52 16 34 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.34 10.74 6.17 -89.69 -0.55 10.19 16 37 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 39 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 41 H -0.02 -0.94 8.14 -2.38 -0.02 -0.96 16 42 H -0.01 -0.85 8.14 -2.38 -0.02 -0.87 16 43 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 44 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.08 1.26 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -63.23 344.11 -0.15 -63.37 By element: Atomic # 1 Polarization: 24.43 SS G_CDS: -0.24 Total: 24.19 kcal Atomic # 6 Polarization: -25.57 SS G_CDS: 3.65 Total: -21.93 kcal Atomic # 7 Polarization: -74.68 SS G_CDS: -2.81 Total: -77.49 kcal Atomic # 8 Polarization: -31.50 SS G_CDS: -2.77 Total: -34.27 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -63.23 -0.15 -63.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385206774.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.266 kcal (2) G-P(sol) polarization free energy of solvation -63.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds