Wall clock time and date at job start Mon Mar 30 2020 04:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09008 * 109.46857 * 2 1 4 4 C 1.53003 * 109.47149 * 119.99649 * 2 1 3 5 5 C 1.52992 * 109.46752 * 60.00162 * 4 2 1 6 6 C 1.53001 * 109.47399 * 60.00426 * 5 4 2 7 7 C 1.53004 * 109.46852 * 299.99926 * 6 5 4 8 8 O 1.42909 * 109.46765 * 299.99708 * 7 6 5 9 9 C 1.52993 * 109.47085 * 179.97438 * 7 6 5 10 10 N 1.46902 * 109.47262 * 59.99875 * 9 7 6 11 11 C 1.46909 * 111.00058 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.46966 * 179.97438 * 11 10 9 13 13 O 1.42898 * 109.46733 * 65.00412 * 12 11 10 14 14 C 1.42899 * 113.99495 * 180.02562 * 13 12 11 15 15 C 1.50708 * 109.47089 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99984 * 359.97438 * 15 14 13 17 17 C 1.37871 * 119.99949 * 179.97438 * 15 14 13 18 18 N 1.31517 * 120.00138 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00040 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47110 * 89.99982 * 19 17 15 21 21 H 1.48499 * 109.47208 * 210.00302 * 19 17 15 22 22 H 1.48503 * 109.46938 * 329.99966 * 19 17 15 23 23 C 1.52999 * 109.47474 * 59.99635 * 7 6 5 24 24 H 1.09003 * 109.46830 * 191.23571 * 1 2 3 25 25 H 1.08993 * 109.47473 * 311.23863 * 1 2 3 26 26 H 1.09004 * 109.47153 * 71.24024 * 1 2 3 27 27 H 1.08999 * 109.47057 * 180.02562 * 4 2 1 28 28 H 1.08997 * 109.46885 * 300.00313 * 4 2 1 29 29 H 1.09005 * 109.46965 * 179.97438 * 5 4 2 30 30 H 1.08996 * 109.47986 * 299.99641 * 5 4 2 31 31 H 1.08994 * 109.47389 * 179.97438 * 6 5 4 32 32 H 1.09004 * 109.47141 * 59.99385 * 6 5 4 33 33 H 0.96699 * 114.00113 * 300.00042 * 8 7 6 34 34 H 1.09002 * 109.47431 * 299.99197 * 9 7 6 35 35 H 1.09002 * 109.47271 * 179.97438 * 9 7 6 36 36 H 1.00897 * 110.99713 * 303.94593 * 10 9 7 37 37 H 1.08997 * 109.46670 * 59.99651 * 11 10 9 38 38 H 1.09002 * 109.46813 * 300.00149 * 11 10 9 39 39 H 1.08996 * 109.46791 * 304.99972 * 12 11 10 40 40 H 1.09000 * 109.46426 * 185.00010 * 12 11 10 41 41 H 1.09000 * 109.47039 * 299.99570 * 14 13 12 42 42 H 1.09001 * 109.47304 * 59.99723 * 14 13 12 43 43 H 0.97008 * 119.99532 * 179.97438 * 18 17 15 44 44 H 1.08996 * 109.46784 * 60.00124 * 23 7 6 45 45 H 1.08993 * 109.47251 * 180.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5300 -2.1636 1.2493 6 6 2.0401 -2.8850 0.0001 7 6 1.5302 -2.1637 -1.2492 8 8 0.1011 -2.1638 -1.2492 9 6 2.0407 -2.8846 -2.4983 10 7 1.5516 -4.2698 -2.4986 11 6 2.0237 -4.9946 -3.6860 12 6 1.4956 -6.4302 -3.6507 13 8 0.0708 -6.4163 -3.7580 14 6 -0.5265 -7.7143 -3.7344 15 6 -2.0230 -7.5809 -3.8527 16 1 -2.4729 -6.6027 -3.9371 17 6 -2.8175 -8.7076 -3.8533 18 7 -2.2696 -9.8988 -3.7511 19 14 -4.6725 -8.5423 -3.9993 20 1 -5.0607 -8.5706 -5.4323 21 1 -5.3275 -9.6685 -3.2866 22 1 -5.1039 -7.2563 -3.3948 23 6 2.0401 -0.7212 -1.2492 24 1 -0.3633 -1.0080 0.2002 25 1 -0.3634 0.6774 0.7727 26 1 -0.3634 0.3305 -0.9731 27 1 3.1300 -0.7208 1.2495 28 1 1.6766 -0.2073 2.1392 29 1 1.8937 -2.6776 2.1391 30 1 0.4401 -2.1638 1.2493 31 1 1.6772 -3.9127 0.0004 32 1 3.1301 -2.8849 0.0002 33 1 -0.2922 -3.0472 -1.2492 34 1 3.1307 -2.8841 -2.4982 35 1 1.6771 -2.3711 -3.3884 36 1 1.8211 -4.7486 -1.6524 37 1 3.1135 -5.0087 -3.6935 38 1 1.6606 -4.4955 -4.5845 39 1 1.7848 -6.9005 -2.7109 40 1 1.9173 -6.9929 -4.4835 41 1 -0.1468 -8.3041 -4.5687 42 1 -0.2794 -8.2109 -2.7961 43 1 -2.8287 -10.6915 -3.7511 44 1 3.1300 -0.7212 -1.2492 45 1 1.6764 -0.2073 -2.1390 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385206775.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:25 Heat of formation + Delta-G solvation = -118.539438 kcal Electronic energy + Delta-G solvation = -21782.196344 eV Core-core repulsion = 18605.729451 eV Total energy + Delta-G solvation = -3176.466892 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.11730 -37.14761 -35.83946 -34.57709 -32.67017 -31.82887 -31.00316 -28.59151 -26.74355 -26.60518 -24.44174 -22.70062 -22.26442 -21.41557 -20.79429 -18.89889 -16.68409 -16.37845 -16.19375 -15.84383 -15.44331 -14.86145 -14.64564 -14.37462 -14.06942 -13.88128 -13.75994 -13.40527 -13.07974 -12.86281 -12.38401 -12.34091 -12.07008 -11.80673 -11.73067 -11.61668 -11.25652 -11.09850 -10.99837 -10.80267 -10.72787 -10.56199 -10.53248 -10.39998 -10.00695 -9.86412 -9.41787 -9.05724 -8.77966 -8.26790 -8.11284 -6.07215 -4.08195 3.33610 3.38454 3.44639 4.13459 4.29873 4.38574 4.55641 4.62916 4.75983 4.89158 4.98838 5.14174 5.18518 5.27330 5.27676 5.29454 5.37392 5.50126 5.55895 5.58739 5.67688 5.73468 5.79114 5.86740 5.88978 5.93981 5.99295 6.01076 6.07980 6.17474 6.20254 6.26231 6.29511 6.34272 6.73385 7.08305 7.14467 7.46344 7.48239 7.84797 7.95409 8.20386 8.64585 9.06542 9.56756 11.04461 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.022497 B = 0.003652 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.309357 B = 7665.067867 C = 8319.080286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.085 4.085 3 H 0.061 0.939 4 C -0.114 4.114 5 C -0.117 4.117 6 C -0.148 4.148 7 C 0.143 3.857 8 O -0.544 6.544 9 C 0.032 3.968 10 N -0.676 5.676 11 C 0.067 3.933 12 C 0.065 3.935 13 O -0.380 6.380 14 C 0.194 3.806 15 C -0.510 4.510 16 H 0.067 0.933 17 C 0.055 3.945 18 N -0.901 5.901 19 Si 0.907 3.093 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.271 1.271 23 C -0.101 4.101 24 H 0.091 0.909 25 H 0.034 0.966 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.382 0.618 34 H 0.029 0.971 35 H 0.078 0.922 36 H 0.337 0.663 37 H 0.033 0.967 38 H 0.078 0.922 39 H 0.033 0.967 40 H 0.040 0.960 41 H 0.002 0.998 42 H 0.003 0.997 43 H 0.263 0.737 44 H 0.068 0.932 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.181 17.013 8.089 22.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.104 4.104 3 H 0.080 0.920 4 C -0.151 4.151 5 C -0.154 4.154 6 C -0.186 4.186 7 C 0.102 3.898 8 O -0.351 6.351 9 C -0.098 4.098 10 N -0.309 5.309 11 C -0.062 4.062 12 C -0.013 4.013 13 O -0.299 6.299 14 C 0.119 3.881 15 C -0.549 4.549 16 H 0.085 0.915 17 C -0.146 4.146 18 N -0.541 5.541 19 Si 0.734 3.266 20 H -0.205 1.205 21 H -0.212 1.212 22 H -0.195 1.195 23 C -0.138 4.138 24 H 0.109 0.891 25 H 0.053 0.947 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.232 0.768 34 H 0.047 0.953 35 H 0.097 0.903 36 H 0.156 0.844 37 H 0.051 0.949 38 H 0.097 0.903 39 H 0.051 0.949 40 H 0.058 0.942 41 H 0.020 0.980 42 H 0.021 0.979 43 H 0.073 0.927 44 H 0.087 0.913 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 11.504 17.782 7.789 22.566 hybrid contribution 0.281 -1.187 0.077 1.222 sum 11.785 16.595 7.866 21.821 Atomic orbital electron populations 1.22067 0.94117 1.03650 1.00618 1.21008 0.97236 0.98055 0.94100 0.92038 1.21563 0.99881 0.95982 0.97712 1.21495 1.02016 0.95099 0.96816 1.22241 1.00762 0.99927 0.95696 1.21018 0.82442 0.94393 0.91978 1.86588 1.17637 1.34492 1.96421 1.22686 0.96812 0.90614 0.99648 1.60308 1.63816 1.01705 1.05023 1.21967 0.95569 0.94488 0.94211 1.22226 0.85903 0.94408 0.98799 1.87957 1.15468 1.32055 1.94434 1.20186 0.93382 0.79382 0.95123 1.21070 0.90353 0.93559 1.49874 0.91459 1.24948 0.99487 0.94877 0.95255 1.69972 1.35747 0.97642 1.50690 0.86346 0.84206 0.77813 0.78197 1.20528 1.21154 1.19543 1.21567 0.99591 0.93929 0.98753 0.89108 0.94723 0.93016 0.92584 0.92258 0.92485 0.90624 0.91116 0.91818 0.76763 0.95333 0.90330 0.84380 0.94913 0.90329 0.94875 0.94195 0.98049 0.97927 0.92749 0.91343 0.91301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 7.81 37.16 0.29 -1.29 16 2 C -0.09 -0.81 3.19 -90.62 -0.29 -1.10 16 3 H 0.06 0.54 8.14 -51.92 -0.42 0.11 16 4 C -0.11 -0.99 5.45 -26.73 -0.15 -1.14 16 5 C -0.12 -1.10 5.59 -26.73 -0.15 -1.25 16 6 C -0.15 -1.44 4.59 -26.73 -0.12 -1.56 16 7 C 0.14 1.52 0.78 -90.62 -0.07 1.45 16 8 O -0.54 -6.84 8.77 -35.23 -0.31 -7.15 16 9 C 0.03 0.37 4.89 -3.83 -0.02 0.35 16 10 N -0.68 -9.29 5.85 -113.77 -0.67 -9.95 16 11 C 0.07 0.97 6.07 -3.82 -0.02 0.95 16 12 C 0.06 1.18 6.22 37.16 0.23 1.42 16 13 O -0.38 -9.19 10.27 -35.23 -0.36 -9.55 16 14 C 0.19 5.36 5.69 36.01 0.20 5.57 16 15 C -0.51 -15.20 9.43 -34.44 -0.32 -15.53 16 16 H 0.07 2.00 7.81 -52.48 -0.41 1.59 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.90 -27.20 13.29 55.43 0.74 -26.47 16 19 Si 0.91 22.10 29.54 -169.99 -5.02 17.08 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 23 C -0.10 -0.97 4.58 -26.73 -0.12 -1.10 16 24 H 0.09 1.06 3.79 -51.93 -0.20 0.86 16 25 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.60 8.09 -51.93 -0.42 0.18 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.79 5.94 -51.93 -0.31 0.48 16 31 H 0.07 0.73 6.57 -51.93 -0.34 0.39 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.38 4.99 8.49 45.56 0.39 5.38 16 34 H 0.03 0.30 8.14 -51.93 -0.42 -0.13 16 35 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.34 4.33 6.77 -39.29 -0.27 4.07 16 37 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 42 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 43 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 44 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 344.84 15.07 5.20 5.20 Total: -1.00 -31.04 344.84 -8.52 -39.56 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -7.46 Total: 2.99 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: -0.64 Total: -11.71 kcal Atomic # 7 Polarization: -36.49 SS G_CDS: 0.07 Total: -36.42 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: -0.67 Total: -16.70 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.04 -8.52 -39.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385206775.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.980 kcal (2) G-P(sol) polarization free energy of solvation -31.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds