Wall clock time and date at job start Mon Mar 30 2020 04:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09008 * 109.46857 * 2 1 4 4 C 1.53003 * 109.47149 * 119.99649 * 2 1 3 5 5 C 1.52992 * 109.46752 * 60.00162 * 4 2 1 6 6 C 1.53001 * 109.47399 * 60.00426 * 5 4 2 7 7 C 1.53004 * 109.46852 * 299.99926 * 6 5 4 8 8 O 1.42909 * 109.46765 * 299.99708 * 7 6 5 9 9 C 1.52993 * 109.47085 * 179.97438 * 7 6 5 10 10 N 1.46902 * 109.47262 * 59.99875 * 9 7 6 11 11 C 1.46909 * 111.00058 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.46966 * 179.97438 * 11 10 9 13 13 O 1.42898 * 109.46733 * 65.00412 * 12 11 10 14 14 C 1.42899 * 113.99495 * 180.02562 * 13 12 11 15 15 C 1.50708 * 109.47089 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99984 * 359.97438 * 15 14 13 17 17 C 1.37871 * 119.99949 * 179.97438 * 15 14 13 18 18 N 1.31517 * 120.00138 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00040 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47110 * 89.99982 * 19 17 15 21 21 H 1.48499 * 109.47208 * 210.00302 * 19 17 15 22 22 H 1.48503 * 109.46938 * 329.99966 * 19 17 15 23 23 C 1.52999 * 109.47474 * 59.99635 * 7 6 5 24 24 H 1.09003 * 109.46830 * 191.23571 * 1 2 3 25 25 H 1.08993 * 109.47473 * 311.23863 * 1 2 3 26 26 H 1.09004 * 109.47153 * 71.24024 * 1 2 3 27 27 H 1.08999 * 109.47057 * 180.02562 * 4 2 1 28 28 H 1.08997 * 109.46885 * 300.00313 * 4 2 1 29 29 H 1.09005 * 109.46965 * 179.97438 * 5 4 2 30 30 H 1.08996 * 109.47986 * 299.99641 * 5 4 2 31 31 H 1.08994 * 109.47389 * 179.97438 * 6 5 4 32 32 H 1.09004 * 109.47141 * 59.99385 * 6 5 4 33 33 H 0.96699 * 114.00113 * 300.00042 * 8 7 6 34 34 H 1.09002 * 109.47431 * 299.99197 * 9 7 6 35 35 H 1.09002 * 109.47271 * 179.97438 * 9 7 6 36 36 H 1.00897 * 110.99713 * 303.94593 * 10 9 7 37 37 H 1.08997 * 109.46670 * 59.99651 * 11 10 9 38 38 H 1.09002 * 109.46813 * 300.00149 * 11 10 9 39 39 H 1.08996 * 109.46791 * 304.99972 * 12 11 10 40 40 H 1.09000 * 109.46426 * 185.00010 * 12 11 10 41 41 H 1.09000 * 109.47039 * 299.99570 * 14 13 12 42 42 H 1.09001 * 109.47304 * 59.99723 * 14 13 12 43 43 H 0.97008 * 119.99532 * 179.97438 * 18 17 15 44 44 H 1.08996 * 109.46784 * 60.00124 * 23 7 6 45 45 H 1.08993 * 109.47251 * 180.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5300 -2.1636 1.2493 6 6 2.0401 -2.8850 0.0001 7 6 1.5302 -2.1637 -1.2492 8 8 0.1011 -2.1638 -1.2492 9 6 2.0407 -2.8846 -2.4983 10 7 1.5516 -4.2698 -2.4986 11 6 2.0237 -4.9946 -3.6860 12 6 1.4956 -6.4302 -3.6507 13 8 0.0708 -6.4163 -3.7580 14 6 -0.5265 -7.7143 -3.7344 15 6 -2.0230 -7.5809 -3.8527 16 1 -2.4729 -6.6027 -3.9371 17 6 -2.8175 -8.7076 -3.8533 18 7 -2.2696 -9.8988 -3.7511 19 14 -4.6725 -8.5423 -3.9993 20 1 -5.0607 -8.5706 -5.4323 21 1 -5.3275 -9.6685 -3.2866 22 1 -5.1039 -7.2563 -3.3948 23 6 2.0401 -0.7212 -1.2492 24 1 -0.3633 -1.0080 0.2002 25 1 -0.3634 0.6774 0.7727 26 1 -0.3634 0.3305 -0.9731 27 1 3.1300 -0.7208 1.2495 28 1 1.6766 -0.2073 2.1392 29 1 1.8937 -2.6776 2.1391 30 1 0.4401 -2.1638 1.2493 31 1 1.6772 -3.9127 0.0004 32 1 3.1301 -2.8849 0.0002 33 1 -0.2922 -3.0472 -1.2492 34 1 3.1307 -2.8841 -2.4982 35 1 1.6771 -2.3711 -3.3884 36 1 1.8211 -4.7486 -1.6524 37 1 3.1135 -5.0087 -3.6935 38 1 1.6606 -4.4955 -4.5845 39 1 1.7848 -6.9005 -2.7109 40 1 1.9173 -6.9929 -4.4835 41 1 -0.1468 -8.3041 -4.5687 42 1 -0.2794 -8.2109 -2.7961 43 1 -2.8287 -10.6915 -3.7511 44 1 3.1300 -0.7212 -1.2492 45 1 1.6764 -0.2073 -2.1390 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385206775.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:24 Heat of formation + Delta-G solvation = -140.206213 kcal Electronic energy + Delta-G solvation = -21783.135886 eV Core-core repulsion = 18605.729451 eV Total energy + Delta-G solvation = -3177.406434 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.95400 -38.76400 -36.99570 -35.69034 -34.81846 -32.68130 -31.99135 -30.06861 -28.59814 -27.41847 -25.48570 -24.45153 -23.53404 -22.66007 -21.65354 -19.69016 -18.63417 -17.65686 -17.33304 -17.14991 -16.84077 -16.46678 -15.95030 -15.50311 -15.26558 -15.13424 -14.77023 -14.46435 -14.39869 -13.99145 -13.60250 -13.53722 -13.22146 -13.01175 -12.89563 -12.83563 -12.62623 -12.56767 -12.46935 -12.26929 -11.89513 -11.83071 -11.77722 -11.30907 -11.25509 -11.22113 -10.85174 -10.67491 -10.32452 -10.17628 -9.29252 -8.30652 -6.42239 1.40930 1.43504 1.55942 2.36385 3.03262 3.10976 3.25521 3.43886 3.76238 3.86549 3.94454 4.16744 4.23179 4.26419 4.36319 4.38283 4.50828 4.51808 4.56459 4.60123 4.68684 4.75584 4.82247 4.85425 4.92816 4.99419 5.03130 5.05465 5.12042 5.17716 5.20767 5.22622 5.38687 5.43260 5.49559 5.56158 5.57450 5.87382 5.98763 6.04679 6.44744 6.59231 6.88098 6.96835 7.30133 8.81686 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.022497 B = 0.003652 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.309357 B = 7665.067867 C = 8319.080286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 H 0.073 0.927 4 C -0.110 4.110 5 C -0.117 4.117 6 C -0.144 4.144 7 C 0.142 3.858 8 O -0.555 6.555 9 C 0.038 3.962 10 N -0.693 5.693 11 C 0.077 3.923 12 C 0.055 3.945 13 O -0.395 6.395 14 C 0.209 3.791 15 C -0.545 4.545 16 H 0.060 0.940 17 C 0.007 3.993 18 N -0.932 5.932 19 Si 0.981 3.019 20 H -0.268 1.268 21 H -0.274 1.274 22 H -0.265 1.265 23 C -0.100 4.100 24 H 0.079 0.921 25 H 0.040 0.960 26 H 0.036 0.964 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.376 0.624 34 H 0.049 0.951 35 H 0.064 0.936 36 H 0.342 0.658 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.040 0.960 40 H 0.046 0.954 41 H -0.018 1.018 42 H -0.015 1.015 43 H 0.270 0.730 44 H 0.087 0.913 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.747 17.956 8.618 23.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.103 4.103 3 H 0.091 0.909 4 C -0.148 4.148 5 C -0.154 4.154 6 C -0.181 4.181 7 C 0.101 3.899 8 O -0.363 6.363 9 C -0.091 4.091 10 N -0.327 5.327 11 C -0.052 4.052 12 C -0.023 4.023 13 O -0.315 6.315 14 C 0.134 3.866 15 C -0.582 4.582 16 H 0.078 0.922 17 C -0.192 4.192 18 N -0.571 5.571 19 Si 0.804 3.196 20 H -0.194 1.194 21 H -0.199 1.199 22 H -0.189 1.189 23 C -0.138 4.138 24 H 0.097 0.903 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.226 0.774 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.162 0.838 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.059 0.941 40 H 0.064 0.936 41 H 0.000 1.000 42 H 0.002 0.998 43 H 0.079 0.921 44 H 0.106 0.894 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 12.100 18.742 8.321 23.810 hybrid contribution 0.192 -1.466 -0.080 1.480 sum 12.292 17.276 8.241 22.748 Atomic orbital electron populations 1.22030 0.95434 1.02954 0.99884 1.21021 0.96071 0.98841 0.94414 0.90897 1.21543 1.00614 0.95190 0.97417 1.21486 1.01136 0.95843 0.96973 1.22189 1.01492 0.99234 0.95228 1.21157 0.81453 0.95217 0.92102 1.86605 1.19050 1.34088 1.96520 1.22652 0.97877 0.89121 0.99486 1.60231 1.64781 1.02750 1.04909 1.21851 0.97246 0.91846 0.94279 1.22589 0.82755 0.97485 0.99421 1.87913 1.19068 1.29981 1.94509 1.19790 0.93054 0.80559 0.93224 1.21387 0.91733 0.93717 1.51401 0.92191 1.25933 1.04969 0.94207 0.94046 1.70072 1.37968 0.98504 1.50577 0.85210 0.77364 0.78247 0.78764 1.19361 1.19863 1.18944 1.21600 1.00680 0.92964 0.98547 0.90294 0.94117 0.94521 0.91248 0.91751 0.91700 0.92132 0.92021 0.90390 0.77441 0.93294 0.91702 0.83789 0.91414 0.91310 0.94132 0.93575 0.99998 0.99773 0.92098 0.89418 0.92171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.06 7.81 71.98 0.56 -2.50 16 2 C -0.09 -1.46 3.19 -10.79 -0.03 -1.49 16 3 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 4 C -0.11 -1.68 5.45 30.59 0.17 -1.51 16 5 C -0.12 -2.03 5.59 30.59 0.17 -1.86 16 6 C -0.14 -2.56 4.59 30.60 0.14 -2.42 16 7 C 0.14 2.86 0.78 -10.79 -0.01 2.86 16 8 O -0.56 -14.14 8.77 -148.98 -1.31 -15.45 16 9 C 0.04 0.82 4.89 86.30 0.42 1.24 16 10 N -0.69 -18.44 5.85 -513.87 -3.01 -21.44 16 11 C 0.08 2.15 6.07 86.30 0.52 2.67 16 12 C 0.05 1.99 6.22 71.98 0.45 2.44 16 13 O -0.40 -19.50 10.27 -148.98 -1.53 -21.03 16 14 C 0.21 11.92 5.69 71.24 0.41 12.33 16 15 C -0.54 -33.07 9.43 25.60 0.24 -32.82 16 16 H 0.06 3.63 7.81 -2.91 -0.02 3.61 16 17 C 0.01 0.39 5.46 84.65 0.46 0.85 16 18 N -0.93 -56.60 13.29 21.45 0.28 -56.32 16 19 Si 0.98 45.12 29.54 68.60 2.03 47.14 16 20 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 21 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 22 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 23 C -0.10 -1.77 4.58 30.59 0.14 -1.63 16 24 H 0.08 1.86 3.79 -2.39 -0.01 1.85 16 25 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.04 0.85 8.09 -2.38 -0.02 0.83 16 27 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 30 H 0.06 1.24 5.94 -2.39 -0.01 1.23 16 31 H 0.06 1.22 6.57 -2.39 -0.02 1.20 16 32 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 33 H 0.38 10.20 8.49 -74.06 -0.63 9.57 16 34 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.34 8.46 6.77 -89.70 -0.61 7.85 16 37 H 0.07 1.45 8.14 -2.39 -0.02 1.44 16 38 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 41 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 42 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 43 H 0.27 15.19 8.31 -92.70 -0.77 14.42 16 44 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -66.75 344.84 -0.17 -66.92 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: -0.28 Total: 22.02 kcal Atomic # 6 Polarization: -25.48 SS G_CDS: 3.64 Total: -21.84 kcal Atomic # 7 Polarization: -75.04 SS G_CDS: -2.72 Total: -77.76 kcal Atomic # 8 Polarization: -33.65 SS G_CDS: -2.84 Total: -36.48 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Total: -66.75 -0.17 -66.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385206775.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.286 kcal (2) G-P(sol) polarization free energy of solvation -66.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds