Wall clock time and date at job start Mon Mar 30 2020 05:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42903 * 109.47529 * 2 1 4 4 C 1.42900 * 114.00269 * 180.02562 * 3 2 1 5 5 H 1.08997 * 112.84928 * 21.69481 * 4 3 2 6 6 C 1.53773 * 113.61309 * 250.49516 * 4 3 2 7 7 C 1.53774 * 87.08486 * 270.79930 * 6 4 3 8 8 H 1.09000 * 113.61177 * 89.20044 * 7 6 4 9 9 N 1.46898 * 113.62034 * 220.02090 * 7 6 4 10 10 C 1.46902 * 111.00039 * 255.49507 * 9 7 6 11 11 C 1.53001 * 109.47206 * 179.97438 * 10 9 7 12 12 O 1.42897 * 109.46947 * 65.00095 * 11 10 9 13 13 C 1.42906 * 114.00168 * 180.02562 * 12 11 10 14 14 C 1.50696 * 109.47041 * 179.97438 * 13 12 11 15 15 H 1.07999 * 120.00319 * 0.02562 * 14 13 12 16 16 C 1.37885 * 119.99717 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99913 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 119.99766 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 C 1.53777 * 113.68773 * 152.96101 * 4 3 2 23 23 C 1.53001 * 113.61864 * 334.57561 * 22 4 3 24 24 C 1.53004 * 113.61467 * 203.67701 * 22 4 3 25 25 H 1.08999 * 109.47517 * 59.99381 * 1 2 3 26 26 H 1.08994 * 109.47366 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46507 * 299.99772 * 1 2 3 28 28 H 1.09007 * 109.46921 * 240.00572 * 2 1 3 29 29 H 1.08999 * 109.47517 * 120.00619 * 2 1 3 30 30 H 1.09002 * 113.61407 * 156.25050 * 6 4 3 31 31 H 1.08997 * 113.61784 * 25.35050 * 6 4 3 32 32 H 1.00905 * 110.99662 * 19.44458 * 9 7 6 33 33 H 1.09002 * 109.46927 * 59.99946 * 10 9 7 34 34 H 1.09000 * 109.47301 * 299.99794 * 10 9 7 35 35 H 1.09003 * 109.47112 * 305.00554 * 11 10 9 36 36 H 1.08995 * 109.47083 * 184.99936 * 11 10 9 37 37 H 1.09005 * 109.47002 * 59.99866 * 13 12 11 38 38 H 1.09002 * 109.46834 * 300.00233 * 13 12 11 39 39 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 40 40 H 1.09000 * 109.47363 * 157.49755 * 23 22 4 41 41 H 1.08995 * 109.47274 * 277.50015 * 23 22 4 42 42 H 1.09005 * 109.46547 * 37.50253 * 23 22 4 43 43 H 1.09006 * 109.46914 * 322.50368 * 24 22 4 44 44 H 1.08996 * 109.47013 * 82.50053 * 24 22 4 45 45 H 1.08995 * 109.47258 * 202.50463 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.9264 0.5632 -0.3722 6 6 4.0084 1.9775 1.3274 7 6 3.8447 3.3955 0.7555 8 1 2.8717 3.8405 0.9634 9 7 4.9627 4.2925 1.0772 10 6 4.5873 5.2444 2.1313 11 6 5.7746 6.1591 2.4388 12 8 6.0677 6.9606 1.2926 13 6 7.1671 7.8552 1.4746 14 6 7.3862 8.6455 0.2103 15 1 6.7494 8.4814 -0.6464 16 6 8.3991 9.5789 0.1476 17 7 8.5901 10.2690 -0.9556 18 14 9.5001 9.8633 1.6296 19 1 8.9125 10.9242 2.4866 20 1 9.6157 8.6047 2.4092 21 1 10.8475 10.2870 1.1711 22 6 3.9475 2.7593 -0.6408 23 6 2.9832 3.3647 -1.6628 24 6 5.3818 2.6569 -1.1635 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3632 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 5.0468 1.6907 1.4931 31 1 3.3705 1.7776 2.1883 32 1 5.7835 3.7675 1.3396 33 1 4.3077 4.6975 3.0318 34 1 3.7429 5.8454 1.7942 35 1 6.6448 5.5529 2.6903 36 1 5.5266 6.8057 3.2804 37 1 8.0661 7.2838 1.7059 38 1 6.9484 8.5370 2.2965 39 1 9.3024 10.9259 -0.9995 40 1 3.1924 4.4287 -1.7739 41 1 3.1124 2.8667 -2.6236 42 1 1.9576 3.2301 -1.3186 43 1 5.9738 2.0449 -0.4828 44 1 5.3762 2.1986 -2.1524 45 1 5.8173 3.6540 -1.2275 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385249550.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:55 Heat of formation + Delta-G solvation = -99.739151 kcal Electronic energy + Delta-G solvation = -21387.360307 eV Core-core repulsion = 18211.708656 eV Total energy + Delta-G solvation = -3175.651651 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.31895 -38.78097 -37.80084 -35.43378 -34.64054 -32.01259 -31.35731 -30.36090 -28.64501 -28.22437 -24.44299 -23.92792 -23.83768 -23.20376 -22.81276 -19.56890 -19.00425 -17.62938 -17.49056 -16.77861 -16.63278 -16.52606 -16.19177 -15.76864 -15.42593 -15.17803 -14.66266 -14.34137 -14.17906 -14.12202 -13.83844 -13.40404 -13.27126 -13.08767 -13.06406 -12.95721 -12.87224 -12.68684 -12.45526 -12.22918 -12.19857 -12.07396 -11.81683 -11.66155 -11.34581 -11.30952 -10.91096 -10.81092 -10.29852 -10.27445 -9.08794 -8.35416 -6.42912 1.33378 1.37122 1.48082 2.30721 2.62636 2.96881 3.13820 3.25948 3.60081 3.64081 3.83867 4.07674 4.20893 4.24347 4.28188 4.32320 4.39300 4.43494 4.52268 4.55157 4.60088 4.63287 4.69324 4.78531 4.82777 4.87405 4.91502 4.96563 5.04178 5.05959 5.06510 5.09906 5.17464 5.27988 5.31817 5.46854 5.51177 5.57892 5.97374 6.21824 6.38657 6.58475 6.62034 6.84375 7.21787 8.82091 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.035807 B = 0.003192 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.775429 B = 8769.566212 C = 9097.109993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.050 3.950 3 O -0.382 6.382 4 C 0.079 3.921 5 H 0.088 0.912 6 C -0.176 4.176 7 C 0.081 3.919 8 H 0.085 0.915 9 N -0.682 5.682 10 C 0.073 3.927 11 C 0.052 3.948 12 O -0.394 6.394 13 C 0.179 3.821 14 C -0.543 4.543 15 H 0.026 0.974 16 C 0.010 3.990 17 N -0.944 5.944 18 Si 0.959 3.041 19 H -0.260 1.260 20 H -0.245 1.245 21 H -0.273 1.273 22 C -0.077 4.077 23 C -0.127 4.127 24 C -0.117 4.117 25 H 0.056 0.944 26 H 0.089 0.911 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.102 0.898 31 H 0.073 0.927 32 H 0.345 0.655 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.050 0.950 36 H 0.056 0.944 37 H 0.010 0.990 38 H 0.008 0.992 39 H 0.272 0.728 40 H 0.036 0.964 41 H 0.056 0.944 42 H 0.060 0.940 43 H 0.066 0.934 44 H 0.059 0.941 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.536 -23.988 7.436 27.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.026 4.026 3 O -0.301 6.301 4 C 0.020 3.980 5 H 0.105 0.895 6 C -0.215 4.215 7 C -0.030 4.030 8 H 0.103 0.897 9 N -0.312 5.312 10 C -0.056 4.056 11 C -0.025 4.025 12 O -0.314 6.314 13 C 0.103 3.897 14 C -0.580 4.580 15 H 0.045 0.955 16 C -0.188 4.188 17 N -0.584 5.584 18 Si 0.780 3.220 19 H -0.184 1.184 20 H -0.168 1.168 21 H -0.198 1.198 22 C -0.078 4.078 23 C -0.184 4.184 24 C -0.175 4.175 25 H 0.075 0.925 26 H 0.108 0.892 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.120 0.880 31 H 0.092 0.908 32 H 0.165 0.835 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.028 0.972 38 H 0.026 0.974 39 H 0.081 0.919 40 H 0.055 0.945 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.085 0.915 44 H 0.078 0.922 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.802 -23.249 6.673 26.913 hybrid contribution 0.673 -0.028 0.971 1.181 sum -11.129 -23.277 7.644 26.909 Atomic orbital electron populations 1.21758 0.93148 1.03258 1.02519 1.22694 0.96075 0.83033 1.00762 1.87862 1.20027 1.27671 1.94578 1.22973 0.81349 0.97561 0.96070 0.89455 1.24116 1.02127 0.97256 0.98044 1.23025 0.93852 0.90244 0.95845 0.89710 1.60156 1.06622 1.20164 1.44306 1.21894 0.96467 0.93458 0.93776 1.22693 0.97789 0.93320 0.88724 1.87985 1.51794 1.54057 1.37523 1.20283 0.85741 0.88324 0.95324 1.21175 1.16392 1.21231 0.99251 0.95544 1.25889 0.98473 0.94359 1.00038 1.70048 1.33385 1.25518 1.29418 0.85564 0.77822 0.80086 0.78553 1.18425 1.16831 1.19825 1.22270 0.96114 0.94493 0.94947 1.21510 0.99138 0.99498 0.98275 1.21404 0.93383 1.02086 1.00610 0.92525 0.89197 0.92487 0.92612 0.92592 0.87986 0.90790 0.83492 0.91422 0.91951 0.93166 0.92602 0.97204 0.97414 0.91853 0.94489 0.92502 0.92073 0.91517 0.92196 0.92967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 10.28 71.98 0.74 -1.09 16 2 C 0.05 0.72 6.51 71.98 0.47 1.19 16 3 O -0.38 -7.74 8.82 -148.98 -1.31 -9.05 16 4 C 0.08 1.49 3.77 31.12 0.12 1.61 16 5 H 0.09 1.37 7.85 -2.39 -0.02 1.35 16 6 C -0.18 -3.20 7.19 31.12 0.22 -2.97 16 7 C 0.08 1.96 3.54 45.44 0.16 2.12 16 8 H 0.08 2.27 7.85 -2.39 -0.02 2.26 16 9 N -0.68 -19.27 5.53 -488.86 -2.70 -21.97 16 10 C 0.07 2.07 5.93 86.30 0.51 2.58 16 11 C 0.05 1.76 6.22 71.98 0.45 2.20 16 12 O -0.39 -18.96 10.27 -148.98 -1.53 -20.49 16 13 C 0.18 9.25 4.76 71.23 0.34 9.58 16 14 C -0.54 -34.13 9.99 25.60 0.26 -33.88 16 15 H 0.03 1.88 8.06 -2.91 -0.02 1.86 16 16 C 0.01 0.60 5.47 84.66 0.46 1.06 16 17 N -0.94 -60.77 13.96 21.45 0.30 -60.47 16 18 Si 0.96 44.17 27.47 68.60 1.88 46.05 16 19 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 20 H -0.24 -10.35 6.54 99.48 0.65 -9.70 16 21 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 22 C -0.08 -1.80 1.35 -51.66 -0.07 -1.87 16 23 C -0.13 -3.27 9.05 71.98 0.65 -2.62 16 24 C -0.12 -2.74 8.37 71.98 0.60 -2.14 16 25 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.06 0.75 8.14 -2.38 -0.02 0.74 16 28 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.10 1.59 7.34 -2.39 -0.02 1.57 16 31 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.35 8.75 8.05 -89.69 -0.72 8.03 16 33 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.06 1.96 8.13 -2.39 -0.02 1.94 16 35 H 0.05 1.54 8.14 -2.39 -0.02 1.53 16 36 H 0.06 1.71 8.14 -2.39 -0.02 1.70 16 37 H 0.01 0.50 7.20 -2.38 -0.02 0.49 16 38 H 0.01 0.40 7.57 -2.39 -0.02 0.38 16 39 H 0.27 16.04 8.31 -92.71 -0.77 15.27 16 40 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.06 1.56 6.97 -2.38 -0.02 1.54 16 43 H 0.07 1.29 7.34 -2.38 -0.02 1.28 16 44 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.05 1.57 7.77 -2.39 -0.02 1.55 16 Total: -1.00 -72.94 359.35 1.70 -71.24 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: 0.15 Total: 18.91 kcal Atomic # 6 Polarization: -29.13 SS G_CDS: 4.91 Total: -24.22 kcal Atomic # 7 Polarization: -80.03 SS G_CDS: -2.40 Total: -82.44 kcal Atomic # 8 Polarization: -26.70 SS G_CDS: -2.84 Total: -29.54 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 1.88 Total: 46.05 kcal Total: -72.94 1.70 -71.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385249550.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.503 kcal (2) G-P(sol) polarization free energy of solvation -72.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds