Wall clock time and date at job start Mon Mar 30 2020 05:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 113.99667 * 2 1 4 4 C 1.53005 * 109.46966 * 184.81373 * 3 2 1 5 5 N 1.46893 * 109.47239 * 66.49929 * 4 3 2 6 6 C 1.46894 * 111.00390 * 159.45893 * 5 4 3 7 7 C 1.52998 * 109.47390 * 212.44798 * 6 5 4 8 8 O 1.42908 * 109.47157 * 58.01495 * 7 6 5 9 9 C 1.42896 * 113.99955 * 179.97438 * 8 7 6 10 10 C 1.50701 * 109.46897 * 180.02562 * 9 8 7 11 11 H 1.07998 * 119.99943 * 359.97438 * 10 9 8 12 12 C 1.37877 * 119.99753 * 180.02562 * 10 9 8 13 13 N 1.31521 * 119.99791 * 179.97438 * 12 10 9 14 14 Si 1.86799 * 120.00121 * 359.97438 * 12 10 9 15 15 H 1.48500 * 109.47170 * 90.00349 * 14 12 10 16 16 H 1.48508 * 109.46977 * 210.00211 * 14 12 10 17 17 H 1.48502 * 109.47380 * 330.00120 * 14 12 10 18 18 C 1.46900 * 110.99834 * 283.41266 * 5 4 3 19 19 H 1.08999 * 109.47226 * 39.88416 * 18 5 4 20 20 C 1.53002 * 109.47112 * 159.88119 * 18 5 4 21 21 C 1.53001 * 109.47056 * 279.88297 * 18 5 4 22 22 C 1.53004 * 117.49552 * 174.31190 * 21 18 5 23 23 C 1.52998 * 60.03078 * 107.47504 * 22 21 18 24 24 H 1.08993 * 109.47643 * 300.00011 * 1 2 3 25 25 H 1.09005 * 109.47142 * 60.00105 * 1 2 3 26 26 H 1.09001 * 109.46723 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47048 * 64.81518 * 3 2 1 28 28 H 1.08993 * 109.47511 * 304.81354 * 3 2 1 29 29 H 1.09004 * 109.47305 * 306.49841 * 4 3 2 30 30 H 1.09001 * 109.46975 * 186.50098 * 4 3 2 31 31 H 1.08997 * 109.47003 * 332.44458 * 6 5 4 32 32 H 1.08997 * 109.47599 * 92.44784 * 6 5 4 33 33 H 1.08995 * 109.47406 * 178.01562 * 7 6 5 34 34 H 1.08999 * 109.47572 * 298.01820 * 7 6 5 35 35 H 1.08998 * 109.47597 * 300.00805 * 9 8 7 36 36 H 1.09002 * 109.46978 * 60.00281 * 9 8 7 37 37 H 0.96998 * 119.99796 * 179.97438 * 13 12 10 38 38 H 1.08999 * 109.47133 * 197.84829 * 20 18 5 39 39 H 1.09002 * 109.47357 * 317.84894 * 20 18 5 40 40 H 1.09000 * 109.46791 * 77.85108 * 20 18 5 41 41 H 1.08990 * 115.56191 * 28.62213 * 21 18 5 42 42 H 1.08999 * 117.49163 * 214.97606 * 22 21 18 43 43 H 1.08995 * 117.50458 * 359.97222 * 22 21 18 44 44 H 1.09002 * 117.49730 * 107.50168 * 23 22 21 45 45 H 1.09000 * 117.49620 * 252.51800 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5308 1.1868 -0.1211 5 7 3.8759 0.6419 -1.4408 6 6 5.2672 0.9556 -1.7925 7 6 5.3813 1.1398 -3.3071 8 8 4.4973 2.1808 -3.7283 9 6 4.5270 2.4351 -5.1341 10 6 3.5628 3.5452 -5.4642 11 1 2.9848 4.0097 -4.6790 12 6 3.4177 3.9671 -6.7688 13 7 2.5759 4.9356 -7.0570 14 14 4.4169 3.1631 -8.1270 15 1 3.6636 2.0082 -8.6784 16 1 4.6690 4.1508 -9.2070 17 1 5.7125 2.6912 -7.5755 18 6 3.6335 -0.8060 -1.4922 19 1 2.7093 -1.0388 -0.9633 20 6 3.5123 -1.2513 -2.9510 21 6 4.7997 -1.5422 -0.8295 22 6 4.6745 -3.0578 -0.6620 23 6 5.6324 -2.4808 -1.7062 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.7584 1.8153 0.9300 28 1 1.6220 1.8761 -0.8436 29 1 3.9063 0.5214 0.6563 30 1 3.9824 2.1721 -0.0053 31 1 5.5704 1.8746 -1.2909 32 1 5.9151 0.1382 -1.4762 33 1 6.4061 1.4072 -3.5644 34 1 5.1118 0.2098 -3.8076 35 1 5.5342 2.7294 -5.4290 36 1 4.2401 1.5320 -5.6728 37 1 2.4741 5.2326 -7.9747 38 1 3.0292 -2.2275 -2.9939 39 1 2.9155 -0.5260 -3.5040 40 1 4.5058 -1.3179 -3.3943 41 1 5.3200 -0.9905 -0.0466 42 1 5.1126 -3.5032 0.2312 43 1 3.7613 -3.5305 -1.0235 44 1 6.7007 -2.5467 -1.4999 45 1 5.3492 -2.5735 -2.7546 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385300059.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:40 Heat of formation + Delta-G solvation = -69.714098 kcal Electronic energy + Delta-G solvation = -22358.923006 eV Core-core repulsion = 19184.573339 eV Total energy + Delta-G solvation = -3174.349667 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -40.66929 -38.65418 -38.31323 -36.39497 -34.81463 -32.08027 -31.44684 -29.86222 -28.39553 -26.95911 -24.87842 -23.94900 -23.38407 -22.91194 -22.73412 -19.76369 -18.98221 -17.74669 -17.57650 -17.19231 -17.02820 -16.52605 -16.31674 -16.04716 -15.56384 -15.34682 -14.99197 -14.59819 -14.37281 -14.06192 -13.65689 -13.33787 -13.30742 -13.04570 -12.91611 -12.75056 -12.64019 -12.54131 -12.26351 -11.96988 -11.92961 -11.87191 -11.69531 -11.56405 -11.23265 -11.16966 -10.88561 -10.76845 -10.35739 -10.10184 -8.98669 -8.35194 -6.41600 1.32581 1.35615 1.46610 2.30422 2.81485 2.90560 2.97460 3.12982 3.26505 3.83319 4.03694 4.08000 4.17430 4.23374 4.28675 4.40944 4.44835 4.45350 4.50068 4.58804 4.59169 4.63897 4.64148 4.73394 4.78777 4.83588 4.85378 4.89319 4.93507 4.97812 5.04066 5.04818 5.11827 5.24346 5.32344 5.48252 5.49024 5.52308 5.99374 6.22142 6.38140 6.39940 6.62509 6.89523 7.23538 8.82189 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.017369 B = 0.005112 C = 0.004415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.699589 B = 5476.352160 C = 6339.912581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.399 6.399 3 C 0.067 3.933 4 C 0.060 3.940 5 N -0.537 5.537 6 C 0.059 3.941 7 C 0.052 3.948 8 O -0.387 6.387 9 C 0.181 3.819 10 C -0.537 4.537 11 H 0.029 0.971 12 C 0.013 3.987 13 N -0.944 5.944 14 Si 0.953 3.047 15 H -0.261 1.261 16 H -0.272 1.272 17 H -0.247 1.247 18 C 0.106 3.894 19 H 0.106 0.894 20 C -0.144 4.144 21 C -0.184 4.184 22 C -0.165 4.165 23 C -0.186 4.186 24 H 0.052 0.948 25 H 0.031 0.969 26 H 0.097 0.903 27 H 0.070 0.930 28 H 0.035 0.965 29 H 0.055 0.945 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.045 0.955 34 H 0.050 0.950 35 H 0.006 0.994 36 H 0.002 0.998 37 H 0.272 0.728 38 H 0.063 0.937 39 H 0.035 0.965 40 H 0.063 0.937 41 H 0.101 0.899 42 H 0.102 0.898 43 H 0.093 0.907 44 H 0.099 0.901 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.390 -16.464 15.364 22.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.319 6.319 3 C -0.010 4.010 4 C -0.068 4.068 5 N -0.260 5.260 6 C -0.068 4.068 7 C -0.025 4.025 8 O -0.306 6.306 9 C 0.105 3.895 10 C -0.575 4.575 11 H 0.047 0.953 12 C -0.184 4.184 13 N -0.584 5.584 14 Si 0.775 3.225 15 H -0.186 1.186 16 H -0.197 1.197 17 H -0.171 1.171 18 C -0.002 4.002 19 H 0.124 0.876 20 C -0.201 4.201 21 C -0.203 4.203 22 C -0.202 4.202 23 C -0.222 4.222 24 H 0.071 0.929 25 H 0.049 0.951 26 H 0.115 0.885 27 H 0.088 0.912 28 H 0.053 0.947 29 H 0.073 0.927 30 H 0.106 0.894 31 H 0.088 0.912 32 H 0.103 0.897 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.024 0.976 36 H 0.019 0.981 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.054 0.946 40 H 0.082 0.918 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.111 0.889 44 H 0.118 0.882 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.992 -16.167 15.011 22.420 hybrid contribution 0.386 0.101 -0.421 0.580 sum 4.379 -16.066 14.590 22.139 Atomic orbital electron populations 1.22840 0.80480 1.03440 1.00152 1.87759 1.20587 1.28259 1.95296 1.22587 0.93771 0.84592 1.00003 1.22206 0.94205 1.00424 0.89916 1.62004 1.22585 1.13182 1.28274 1.22270 0.89638 1.01244 0.93666 1.22859 0.92416 0.90901 0.96328 1.87955 1.63848 1.55211 1.23576 1.20225 0.94967 0.94100 0.80244 1.21148 1.23657 1.18618 0.94083 0.95303 1.25807 0.96320 0.95270 1.01041 1.70038 1.37799 1.29774 1.20749 0.85643 0.80004 0.78862 0.78041 1.18584 1.19705 1.17062 1.21589 0.97886 0.85018 0.95697 0.87649 1.22095 1.01496 1.00147 0.96393 1.22923 1.01265 0.93195 1.02936 1.22924 1.01550 0.94619 1.01125 1.23260 0.97628 1.03965 0.97394 0.92914 0.95056 0.88460 0.91238 0.94662 0.92712 0.89427 0.91235 0.89720 0.93692 0.93222 0.97648 0.98067 0.91908 0.91788 0.94615 0.91840 0.88050 0.88007 0.88893 0.88237 0.88335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 11.01 113.37 1.25 1.80 16 2 O -0.40 -10.24 7.76 -148.98 -1.16 -11.40 16 3 C 0.07 1.74 6.26 71.98 0.45 2.19 16 4 C 0.06 1.53 5.42 86.31 0.47 2.00 16 5 N -0.54 -16.09 4.06 -871.01 -3.54 -19.63 16 6 C 0.06 1.71 5.21 86.30 0.45 2.15 16 7 C 0.05 1.86 5.97 71.98 0.43 2.29 16 8 O -0.39 -18.73 10.15 -148.98 -1.51 -20.24 16 9 C 0.18 9.47 4.76 71.24 0.34 9.81 16 10 C -0.54 -33.76 9.99 25.60 0.26 -33.50 16 11 H 0.03 2.04 8.06 -2.91 -0.02 2.02 16 12 C 0.01 0.80 5.47 84.65 0.46 1.26 16 13 N -0.94 -60.62 13.96 21.45 0.30 -60.33 16 14 Si 0.95 44.66 27.47 68.60 1.88 46.55 16 15 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 16 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 17 H -0.25 -10.73 6.54 99.48 0.65 -10.08 16 18 C 0.11 2.78 2.48 44.92 0.11 2.89 16 19 H 0.11 2.95 4.92 -2.39 -0.01 2.94 16 20 C -0.14 -4.06 7.02 71.98 0.51 -3.56 16 21 C -0.18 -3.80 3.63 -10.77 -0.04 -3.84 16 22 C -0.16 -2.87 10.13 30.60 0.31 -2.56 16 23 C -0.19 -3.42 9.24 30.62 0.28 -3.13 16 24 H 0.05 0.89 8.14 -2.39 -0.02 0.88 16 25 H 0.03 0.71 8.14 -2.38 -0.02 0.69 16 26 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.05 1.21 7.13 -2.38 -0.02 1.20 16 30 H 0.09 2.16 7.48 -2.39 -0.02 2.14 16 31 H 0.07 1.96 7.36 -2.39 -0.02 1.95 16 32 H 0.09 1.99 5.23 -2.39 -0.01 1.98 16 33 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.05 1.71 5.02 -2.39 -0.01 1.70 16 35 H 0.01 0.29 7.20 -2.39 -0.02 0.28 16 36 H 0.00 0.08 7.57 -2.39 -0.02 0.07 16 37 H 0.27 16.01 8.31 -92.71 -0.77 15.24 16 38 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.06 1.70 4.07 -2.39 -0.01 1.69 16 41 H 0.10 2.04 6.84 -2.39 -0.02 2.03 16 42 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.10 1.94 5.63 -2.39 -0.01 1.93 16 Total: -1.00 -72.15 345.10 2.14 -70.01 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: 0.89 Total: 17.22 kcal Atomic # 6 Polarization: -27.47 SS G_CDS: 5.27 Total: -22.19 kcal Atomic # 7 Polarization: -76.71 SS G_CDS: -3.24 Total: -79.95 kcal Atomic # 8 Polarization: -28.97 SS G_CDS: -2.67 Total: -31.64 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 1.88 Total: 46.55 kcal Total: -72.15 2.14 -70.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385300059.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.297 kcal (2) G-P(sol) polarization free energy of solvation -72.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds