Wall clock time and date at job start Mon Mar 30 2020 04:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47322 * 2 1 4 4 O 1.42899 * 109.47172 * 180.02562 * 3 2 1 5 5 C 1.42905 * 114.00023 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.53413 * 29.89529 * 5 4 3 7 7 C 1.53123 * 109.50249 * 269.80578 * 5 4 3 8 8 C 1.53111 * 109.15973 * 182.40512 * 7 5 4 9 9 C 1.53038 * 109.28451 * 57.64984 * 8 7 5 10 10 N 1.46846 * 109.51982 * 300.82335 * 9 8 7 11 11 C 1.46904 * 111.00102 * 185.83464 * 10 9 8 12 12 C 1.53005 * 109.46837 * 52.03050 * 11 10 9 13 13 O 1.42907 * 109.46840 * 62.32613 * 12 11 10 14 14 C 1.42899 * 114.00070 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.47159 * 179.97438 * 14 13 12 16 16 H 1.08006 * 119.99794 * 0.02562 * 15 14 13 17 17 C 1.37876 * 119.99993 * 179.72253 * 15 14 13 18 18 N 1.31508 * 120.00160 * 0.28065 * 17 15 14 19 19 Si 1.86797 * 119.99977 * 180.27579 * 17 15 14 20 20 H 1.48497 * 109.47000 * 60.00223 * 19 17 15 21 21 H 1.48503 * 109.47200 * 180.02562 * 19 17 15 22 22 H 1.48508 * 109.47340 * 300.00228 * 19 17 15 23 23 C 1.46847 * 111.20043 * 61.73700 * 10 9 8 24 24 H 1.08997 * 109.46892 * 60.00457 * 1 2 3 25 25 H 1.09009 * 109.47130 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46983 * 300.00081 * 1 2 3 27 27 H 1.09000 * 109.47328 * 239.99223 * 2 1 3 28 28 H 1.09010 * 109.47015 * 119.99834 * 2 1 3 29 29 H 1.09000 * 109.47554 * 59.99361 * 3 2 1 30 30 H 1.09010 * 109.46940 * 299.99880 * 3 2 1 31 31 H 1.09004 * 109.51902 * 302.30640 * 7 5 4 32 32 H 1.08997 * 109.52326 * 62.49239 * 7 5 4 33 33 H 1.09003 * 109.50377 * 177.59238 * 8 7 5 34 34 H 1.09002 * 109.50313 * 297.66773 * 8 7 5 35 35 H 1.09000 * 109.46819 * 180.80474 * 9 8 7 36 36 H 1.09008 * 109.46121 * 60.83363 * 9 8 7 37 37 H 1.08996 * 109.46838 * 292.03941 * 11 10 9 38 38 H 1.08991 * 109.47635 * 172.03529 * 11 10 9 39 39 H 1.08997 * 109.47227 * 302.32616 * 12 11 10 40 40 H 1.08997 * 109.46943 * 182.32092 * 12 11 10 41 41 H 1.09005 * 109.47085 * 59.99938 * 14 13 12 42 42 H 1.08997 * 109.47247 * 299.99984 * 14 13 12 43 43 H 0.97001 * 120.00487 * 180.02562 * 18 17 15 44 44 H 1.09007 * 109.46231 * 58.27778 * 23 10 9 45 45 H 1.08996 * 109.46386 * 178.23718 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4690 1.4424 -0.0006 5 6 4.0503 2.7479 -0.0012 6 1 3.3852 3.4433 0.5108 7 6 4.2621 3.2125 -1.4448 8 6 4.9398 4.5854 -1.4366 9 6 6.2635 4.4911 -0.6742 10 7 6.0070 4.0436 0.7007 11 6 7.2376 4.0740 1.5024 12 6 7.8900 5.4528 1.3831 13 8 7.0070 6.4449 1.9107 14 6 7.5236 7.7757 1.8474 15 6 6.5152 8.7341 2.4268 16 1 5.5741 8.3638 2.8058 17 6 6.7967 10.0828 2.4787 18 7 7.9428 10.5336 2.0176 19 14 5.5499 11.2698 3.2039 20 1 5.2831 10.9044 4.6182 21 1 6.0888 12.6523 3.1426 22 1 4.2865 11.1966 2.4269 23 6 5.3996 2.7068 0.7195 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8901 29 1 1.6767 1.9564 0.8899 30 1 1.6767 1.9563 -0.8901 31 1 4.8957 2.4966 -1.9686 32 1 3.2986 3.2848 -1.9493 33 1 5.1321 4.9025 -2.4616 34 1 4.2885 5.3098 -0.9477 35 1 6.7417 5.4703 -0.6542 36 1 6.9193 3.7768 -1.1722 37 1 7.9275 3.3130 1.1380 38 1 6.9961 3.8755 2.5465 39 1 8.0940 5.6688 0.3344 40 1 8.8242 5.4625 1.9445 41 1 7.7204 8.0401 0.8084 42 1 8.4501 7.8333 2.4187 43 1 8.1410 11.4824 2.0544 44 1 6.0595 2.0009 0.2150 45 1 5.2505 2.3901 1.7517 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385340581.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:05 Heat of formation + Delta-G solvation = -106.984890 kcal Electronic energy + Delta-G solvation = -21327.504998 eV Core-core repulsion = 18151.539148 eV Total energy + Delta-G solvation = -3175.965850 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.51479 -37.72063 -36.30259 -34.07885 -33.06128 -32.48691 -30.16389 -28.62960 -26.72888 -26.24144 -24.01082 -22.88177 -22.25872 -21.74220 -20.88425 -19.65816 -16.92374 -16.35569 -16.15413 -15.94830 -15.58421 -15.28854 -14.61675 -14.30529 -14.27420 -14.15840 -13.84058 -13.47158 -13.14934 -12.77480 -12.65404 -12.59803 -12.19804 -12.06467 -11.72575 -11.47175 -11.31430 -11.11968 -10.98198 -10.82504 -10.78994 -10.70207 -10.69433 -10.48528 -10.24314 -9.91799 -9.48746 -9.06158 -8.75465 -8.11769 -8.03377 -6.06957 -4.07915 3.33441 3.35006 3.37266 3.41611 4.22410 4.39079 4.68789 4.73409 4.79281 4.86905 4.91221 5.04008 5.08236 5.21699 5.27124 5.29371 5.29441 5.37693 5.48069 5.52609 5.58249 5.61878 5.68298 5.69990 5.76952 5.85581 5.88148 5.92725 5.99676 6.02449 6.05229 6.09550 6.29123 6.32605 6.42407 7.10766 7.13762 7.28372 7.36503 7.47246 7.84654 8.20922 8.65493 9.06533 9.56769 11.04680 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.021023 B = 0.003422 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.556725 B = 8180.901306 C = 8880.132085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C 0.062 3.938 4 O -0.387 6.387 5 C 0.094 3.906 6 H 0.072 0.928 7 C -0.139 4.139 8 C -0.114 4.114 9 C 0.050 3.950 10 N -0.521 5.521 11 C 0.064 3.936 12 C 0.061 3.939 13 O -0.378 6.378 14 C 0.194 3.806 15 C -0.510 4.510 16 H 0.066 0.934 17 C 0.055 3.945 18 N -0.901 5.901 19 Si 0.907 3.093 20 H -0.275 1.275 21 H -0.287 1.287 22 H -0.275 1.275 23 C 0.062 3.938 24 H 0.055 0.945 25 H 0.059 0.941 26 H 0.056 0.944 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.049 0.951 30 H 0.047 0.953 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.090 0.910 36 H 0.027 0.973 37 H 0.038 0.962 38 H 0.082 0.918 39 H 0.039 0.961 40 H 0.041 0.959 41 H 0.002 0.998 42 H 0.002 0.998 43 H 0.264 0.736 44 H 0.036 0.964 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.635 -19.176 -6.652 22.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.015 4.015 4 O -0.306 6.306 5 C 0.036 3.964 6 H 0.090 0.910 7 C -0.177 4.177 8 C -0.152 4.152 9 C -0.078 4.078 10 N -0.247 5.247 11 C -0.063 4.063 12 C -0.017 4.017 13 O -0.298 6.298 14 C 0.120 3.880 15 C -0.549 4.549 16 H 0.084 0.916 17 C -0.146 4.146 18 N -0.540 5.540 19 Si 0.735 3.265 20 H -0.200 1.200 21 H -0.212 1.212 22 H -0.200 1.200 23 C -0.066 4.066 24 H 0.074 0.926 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.108 0.892 36 H 0.045 0.955 37 H 0.056 0.944 38 H 0.100 0.900 39 H 0.057 0.943 40 H 0.059 0.941 41 H 0.020 0.980 42 H 0.020 0.980 43 H 0.073 0.927 44 H 0.054 0.946 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.940 -18.891 -6.384 21.853 hybrid contribution 0.212 0.486 -0.176 0.559 sum -8.728 -18.405 -6.560 21.400 Atomic orbital electron populations 1.21701 0.94878 1.02090 1.02107 1.21457 0.95604 0.95833 1.03159 1.22564 0.81213 0.97485 1.00196 1.87824 1.19375 1.28233 1.95133 1.22038 0.94988 0.83940 0.95420 0.91016 1.22073 1.00958 0.97654 0.96980 1.21530 0.97052 0.96641 1.00010 1.22224 0.96646 1.01191 0.87737 1.61701 1.27263 1.23701 1.12014 1.22123 0.89599 0.95829 0.98743 1.22358 0.92955 0.88993 0.97442 1.87972 1.42428 1.17017 1.82356 1.20174 0.94796 0.77476 0.95597 1.21024 1.03071 0.90856 1.39912 0.91562 1.24945 0.95848 0.98099 0.95680 1.69953 1.22691 1.14717 1.46660 0.86406 0.81096 0.79317 0.79710 1.20038 1.21240 1.20027 1.21957 0.94114 0.89902 1.00604 0.92554 0.92146 0.92449 0.91329 0.91205 0.93245 0.93512 0.91720 0.92013 0.91289 0.90469 0.89193 0.95510 0.94392 0.89950 0.94331 0.94139 0.97985 0.98003 0.92689 0.94631 0.90331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 37.16 0.37 -0.62 16 2 C -0.12 -1.01 6.30 -26.73 -0.17 -1.18 16 3 C 0.06 0.62 5.75 37.16 0.21 0.83 16 4 O -0.39 -4.80 9.99 -35.23 -0.35 -5.15 16 5 C 0.09 1.20 2.77 -26.65 -0.07 1.13 16 6 H 0.07 0.97 7.79 -51.93 -0.40 0.57 16 7 C -0.14 -1.64 5.62 -26.61 -0.15 -1.79 16 8 C -0.11 -1.49 6.09 -26.65 -0.16 -1.66 16 9 C 0.05 0.73 5.04 -3.83 -0.02 0.71 16 10 N -0.52 -8.18 4.67 -234.67 -1.10 -9.27 16 11 C 0.06 1.00 5.52 -3.82 -0.02 0.98 16 12 C 0.06 1.13 5.56 37.16 0.21 1.34 16 13 O -0.38 -9.23 10.23 -35.23 -0.36 -9.59 16 14 C 0.19 5.37 5.69 36.00 0.20 5.58 16 15 C -0.51 -15.21 9.43 -34.44 -0.32 -15.54 16 16 H 0.07 1.97 7.81 -52.48 -0.41 1.56 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.90 -27.19 13.29 55.43 0.74 -26.46 16 19 Si 0.91 22.09 29.54 -169.99 -5.02 17.07 16 20 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 23 C 0.06 0.85 5.11 -3.84 -0.02 0.83 16 24 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.59 8.14 -51.92 -0.42 0.16 16 29 H 0.05 0.48 8.09 -51.93 -0.42 0.06 16 30 H 0.05 0.44 7.95 -51.92 -0.41 0.02 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.67 7.95 -51.93 -0.41 0.25 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.09 1.50 5.79 -51.93 -0.30 1.20 16 36 H 0.03 0.36 8.14 -51.92 -0.42 -0.06 16 37 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.04 0.70 6.05 -51.93 -0.31 0.38 16 40 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.00 0.07 8.14 -51.93 -0.42 -0.36 16 42 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 43 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 44 H 0.04 0.47 8.14 -51.92 -0.42 0.04 16 45 H 0.08 1.05 8.12 -51.93 -0.42 0.63 16 LS Contribution 357.30 15.07 5.38 5.38 Total: -1.00 -31.52 357.30 -9.32 -40.85 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: -8.57 Total: -4.95 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: -0.04 Total: -7.89 kcal Atomic # 7 Polarization: -35.37 SS G_CDS: -0.36 Total: -35.73 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -0.71 Total: -14.74 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.52 -9.32 -40.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385340581.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.138 kcal (2) G-P(sol) polarization free energy of solvation -31.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds