Wall clock time and date at job start Mon Mar 30 2020 04:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47322 * 2 1 4 4 O 1.42899 * 109.47172 * 180.02562 * 3 2 1 5 5 C 1.42905 * 114.00023 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.53413 * 29.89529 * 5 4 3 7 7 C 1.53123 * 109.50249 * 269.80578 * 5 4 3 8 8 C 1.53111 * 109.15973 * 182.40512 * 7 5 4 9 9 C 1.53038 * 109.28451 * 57.64984 * 8 7 5 10 10 N 1.46846 * 109.51982 * 300.82335 * 9 8 7 11 11 C 1.46904 * 111.00102 * 185.83464 * 10 9 8 12 12 C 1.53005 * 109.46837 * 52.03050 * 11 10 9 13 13 O 1.42907 * 109.46840 * 62.32613 * 12 11 10 14 14 C 1.42899 * 114.00070 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.47159 * 179.97438 * 14 13 12 16 16 H 1.08006 * 119.99794 * 0.02562 * 15 14 13 17 17 C 1.37876 * 119.99993 * 179.72253 * 15 14 13 18 18 N 1.31508 * 120.00160 * 0.28065 * 17 15 14 19 19 Si 1.86797 * 119.99977 * 180.27579 * 17 15 14 20 20 H 1.48497 * 109.47000 * 60.00223 * 19 17 15 21 21 H 1.48503 * 109.47200 * 180.02562 * 19 17 15 22 22 H 1.48508 * 109.47340 * 300.00228 * 19 17 15 23 23 C 1.46847 * 111.20043 * 61.73700 * 10 9 8 24 24 H 1.08997 * 109.46892 * 60.00457 * 1 2 3 25 25 H 1.09009 * 109.47130 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46983 * 300.00081 * 1 2 3 27 27 H 1.09000 * 109.47328 * 239.99223 * 2 1 3 28 28 H 1.09010 * 109.47015 * 119.99834 * 2 1 3 29 29 H 1.09000 * 109.47554 * 59.99361 * 3 2 1 30 30 H 1.09010 * 109.46940 * 299.99880 * 3 2 1 31 31 H 1.09004 * 109.51902 * 302.30640 * 7 5 4 32 32 H 1.08997 * 109.52326 * 62.49239 * 7 5 4 33 33 H 1.09003 * 109.50377 * 177.59238 * 8 7 5 34 34 H 1.09002 * 109.50313 * 297.66773 * 8 7 5 35 35 H 1.09000 * 109.46819 * 180.80474 * 9 8 7 36 36 H 1.09008 * 109.46121 * 60.83363 * 9 8 7 37 37 H 1.08996 * 109.46838 * 292.03941 * 11 10 9 38 38 H 1.08991 * 109.47635 * 172.03529 * 11 10 9 39 39 H 1.08997 * 109.47227 * 302.32616 * 12 11 10 40 40 H 1.08997 * 109.46943 * 182.32092 * 12 11 10 41 41 H 1.09005 * 109.47085 * 59.99938 * 14 13 12 42 42 H 1.08997 * 109.47247 * 299.99984 * 14 13 12 43 43 H 0.97001 * 120.00487 * 180.02562 * 18 17 15 44 44 H 1.09007 * 109.46231 * 58.27778 * 23 10 9 45 45 H 1.08996 * 109.46386 * 178.23718 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4690 1.4424 -0.0006 5 6 4.0503 2.7479 -0.0012 6 1 3.3852 3.4433 0.5108 7 6 4.2621 3.2125 -1.4448 8 6 4.9398 4.5854 -1.4366 9 6 6.2635 4.4911 -0.6742 10 7 6.0070 4.0436 0.7007 11 6 7.2376 4.0740 1.5024 12 6 7.8900 5.4528 1.3831 13 8 7.0070 6.4449 1.9107 14 6 7.5236 7.7757 1.8474 15 6 6.5152 8.7341 2.4268 16 1 5.5741 8.3638 2.8058 17 6 6.7967 10.0828 2.4787 18 7 7.9428 10.5336 2.0176 19 14 5.5499 11.2698 3.2039 20 1 5.2831 10.9044 4.6182 21 1 6.0888 12.6523 3.1426 22 1 4.2865 11.1966 2.4269 23 6 5.3996 2.7068 0.7195 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8901 29 1 1.6767 1.9564 0.8899 30 1 1.6767 1.9563 -0.8901 31 1 4.8957 2.4966 -1.9686 32 1 3.2986 3.2848 -1.9493 33 1 5.1321 4.9025 -2.4616 34 1 4.2885 5.3098 -0.9477 35 1 6.7417 5.4703 -0.6542 36 1 6.9193 3.7768 -1.1722 37 1 7.9275 3.3130 1.1380 38 1 6.9961 3.8755 2.5465 39 1 8.0940 5.6688 0.3344 40 1 8.8242 5.4625 1.9445 41 1 7.7204 8.0401 0.8084 42 1 8.4501 7.8333 2.4187 43 1 8.1410 11.4824 2.0544 44 1 6.0595 2.0009 0.2150 45 1 5.2505 2.3901 1.7517 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385340581.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:05 Heat of formation + Delta-G solvation = -127.463508 kcal Electronic energy + Delta-G solvation = -21328.393018 eV Core-core repulsion = 18151.539148 eV Total energy + Delta-G solvation = -3176.853869 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.59542 -38.95908 -37.87621 -35.14961 -34.69013 -33.89423 -31.31714 -30.12625 -28.67571 -26.97949 -25.24600 -24.44077 -23.95195 -22.43316 -22.14378 -20.74793 -18.61031 -17.94005 -17.39297 -17.24794 -16.79182 -16.60633 -16.28519 -15.70845 -15.55033 -15.16730 -15.01545 -14.72936 -14.66802 -13.85339 -13.70992 -13.56216 -13.47284 -13.38491 -12.99288 -12.82601 -12.77452 -12.55927 -12.35482 -12.13104 -12.10599 -11.91457 -11.86969 -11.60990 -11.51922 -11.40470 -11.23674 -10.82880 -10.42092 -10.15989 -9.20879 -8.30690 -6.42463 1.40050 1.44948 1.53290 2.35533 2.37608 3.02899 3.09840 3.31562 3.74904 3.80375 3.98181 4.03826 4.05384 4.18089 4.21880 4.25312 4.35720 4.44658 4.45633 4.49144 4.59782 4.61462 4.63641 4.72424 4.74826 4.82255 4.84761 4.93888 4.95976 4.98469 5.01145 5.13942 5.16838 5.20463 5.24632 5.34338 5.38678 5.56588 5.98572 6.09250 6.09634 6.33478 6.57849 6.86987 7.29590 8.81430 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.021023 B = 0.003422 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.556725 B = 8180.901306 C = 8880.132085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.120 4.120 3 C 0.056 3.944 4 O -0.397 6.397 5 C 0.096 3.904 6 H 0.059 0.941 7 C -0.130 4.130 8 C -0.111 4.111 9 C 0.050 3.950 10 N -0.545 5.545 11 C 0.072 3.928 12 C 0.052 3.948 13 O -0.393 6.393 14 C 0.210 3.790 15 C -0.545 4.545 16 H 0.059 0.941 17 C 0.006 3.994 18 N -0.931 5.931 19 Si 0.982 3.018 20 H -0.266 1.266 21 H -0.275 1.275 22 H -0.266 1.266 23 C 0.066 3.934 24 H 0.060 0.940 25 H 0.070 0.930 26 H 0.057 0.943 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.048 0.952 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.056 0.944 35 H 0.063 0.937 36 H 0.044 0.956 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.044 0.956 40 H 0.049 0.951 41 H -0.017 1.017 42 H -0.017 1.017 43 H 0.270 0.730 44 H 0.045 0.955 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.817 -19.936 -6.932 23.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C -0.020 4.020 4 O -0.316 6.316 5 C 0.038 3.962 6 H 0.077 0.923 7 C -0.168 4.168 8 C -0.149 4.149 9 C -0.077 4.077 10 N -0.271 5.271 11 C -0.056 4.056 12 C -0.025 4.025 13 O -0.313 6.313 14 C 0.135 3.865 15 C -0.583 4.583 16 H 0.078 0.922 17 C -0.192 4.192 18 N -0.571 5.571 19 Si 0.804 3.196 20 H -0.191 1.191 21 H -0.199 1.199 22 H -0.191 1.191 23 C -0.062 4.062 24 H 0.079 0.921 25 H 0.089 0.911 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.104 0.896 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.062 0.938 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.062 0.938 40 H 0.067 0.933 41 H 0.001 0.999 42 H 0.001 0.999 43 H 0.079 0.921 44 H 0.063 0.937 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.120 -19.681 -6.671 23.114 hybrid contribution 0.623 0.648 -0.117 0.906 sum -9.497 -19.033 -6.788 22.328 Atomic orbital electron populations 1.21692 0.93532 1.02913 1.02363 1.21457 0.96698 0.94566 1.03003 1.22756 0.80003 0.98784 1.00488 1.87807 1.20777 1.27772 1.95206 1.21945 0.94382 0.84037 0.95799 0.92313 1.21994 1.01569 0.96718 0.96502 1.21503 0.95946 0.97054 1.00427 1.22185 0.97649 1.00123 0.87762 1.61660 1.27550 1.25314 1.12593 1.22055 0.90290 0.94177 0.99031 1.22687 0.93004 0.89226 0.97621 1.87925 1.43956 1.16418 1.82956 1.19777 0.93703 0.79245 0.93800 1.21342 1.03430 0.92203 1.41288 0.92234 1.25947 0.98024 0.99774 0.95494 1.70059 1.24460 1.15573 1.46978 0.85257 0.78361 0.76830 0.79103 1.19055 1.19942 1.19057 1.21931 0.94541 0.88818 1.00872 0.92114 0.91061 0.92396 0.91269 0.91571 0.93379 0.92810 0.91015 0.90769 0.89616 0.92547 0.91891 0.93783 0.91226 0.90105 0.93778 0.93311 0.99925 0.99912 0.92083 0.93729 0.90424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.91 71.98 0.71 -0.97 16 2 C -0.12 -1.80 6.30 30.59 0.19 -1.60 16 3 C 0.06 1.05 5.75 71.98 0.41 1.46 16 4 O -0.40 -9.31 9.99 -148.98 -1.49 -10.79 16 5 C 0.10 2.36 2.77 30.64 0.08 2.45 16 6 H 0.06 1.58 7.79 -2.39 -0.02 1.56 16 7 C -0.13 -2.87 5.62 30.67 0.17 -2.70 16 8 C -0.11 -2.82 6.09 30.64 0.19 -2.64 16 9 C 0.05 1.45 5.04 86.33 0.44 1.88 16 10 N -0.54 -16.78 4.67 -896.37 -4.19 -20.96 16 11 C 0.07 2.17 5.52 86.30 0.48 2.64 16 12 C 0.05 1.95 5.56 71.98 0.40 2.35 16 13 O -0.39 -19.68 10.23 -148.98 -1.52 -21.20 16 14 C 0.21 12.05 5.69 71.24 0.41 12.45 16 15 C -0.55 -33.17 9.43 25.60 0.24 -32.93 16 16 H 0.06 3.61 7.81 -2.91 -0.02 3.59 16 17 C 0.01 0.35 5.46 84.66 0.46 0.81 16 18 N -0.93 -56.70 13.29 21.45 0.28 -56.41 16 19 Si 0.98 45.06 29.54 68.60 2.03 47.08 16 20 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 21 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 22 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 23 C 0.07 1.71 5.11 86.32 0.44 2.15 16 24 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 25 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 26 H 0.06 0.65 8.14 -2.39 -0.02 0.64 16 27 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.07 1.03 8.14 -2.38 -0.02 1.02 16 29 H 0.05 0.90 8.09 -2.39 -0.02 0.88 16 30 H 0.05 0.92 7.95 -2.38 -0.02 0.90 16 31 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.07 1.46 7.95 -2.39 -0.02 1.44 16 33 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.06 2.14 5.79 -2.39 -0.01 2.13 16 36 H 0.04 1.11 8.14 -2.38 -0.02 1.09 16 37 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 39 H 0.04 1.62 6.05 -2.39 -0.01 1.60 16 40 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 41 H -0.02 -1.01 8.14 -2.38 -0.02 -1.03 16 42 H -0.02 -1.01 8.14 -2.39 -0.02 -1.02 16 43 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 44 H 0.04 1.08 8.14 -2.38 -0.02 1.06 16 45 H 0.08 2.00 8.12 -2.39 -0.02 1.98 16 Total: -1.00 -67.58 357.30 0.65 -66.93 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: 0.91 Total: 9.99 kcal Atomic # 6 Polarization: -19.26 SS G_CDS: 4.63 Total: -14.64 kcal Atomic # 7 Polarization: -73.47 SS G_CDS: -3.90 Total: -77.38 kcal Atomic # 8 Polarization: -28.98 SS G_CDS: -3.01 Total: -32.00 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.08 kcal Total: -67.58 0.65 -66.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385340581.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.537 kcal (2) G-P(sol) polarization free energy of solvation -67.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds