Wall clock time and date at job start Mon Mar 30 2020 06:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46959 * 110.99891 * 2 1 4 4 C 1.53043 * 109.36485 * 183.18757 * 3 2 1 5 5 N 1.46960 * 109.36711 * 301.59707 * 4 3 2 6 6 C 1.46900 * 111.00290 * 183.18663 * 5 4 3 7 7 C 1.46961 * 110.87370 * 59.32040 * 5 4 3 8 8 H 1.08999 * 109.50615 * 60.66476 * 7 5 4 9 9 C 1.53004 * 109.48654 * 180.71311 * 7 5 4 10 10 N 1.46903 * 109.47131 * 54.80665 * 9 7 5 11 11 C 1.46896 * 111.00051 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47182 * 180.02562 * 11 10 9 13 13 O 1.42906 * 109.46896 * 65.00106 * 12 11 10 14 14 C 1.42904 * 114.00038 * 179.97438 * 13 12 11 15 15 C 1.50705 * 109.46874 * 180.02562 * 14 13 12 16 16 H 1.07996 * 120.00128 * 0.02562 * 15 14 13 17 17 C 1.37871 * 119.99407 * 180.02562 * 15 14 13 18 18 N 1.31521 * 119.99860 * 180.02562 * 17 15 14 19 19 Si 1.86795 * 120.00548 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.47400 * 89.99822 * 19 17 15 21 21 H 1.48504 * 109.47451 * 210.00257 * 19 17 15 22 22 H 1.48508 * 109.46967 * 330.00054 * 19 17 15 23 23 C 1.46952 * 111.00177 * 123.79915 * 2 1 3 24 24 H 1.09000 * 109.47616 * 296.19956 * 1 2 3 25 25 H 1.09004 * 109.46838 * 56.20159 * 1 2 3 26 26 H 1.08997 * 109.46949 * 176.19765 * 1 2 3 27 27 H 1.08999 * 109.48740 * 303.15710 * 3 2 1 28 28 H 1.09000 * 109.48766 * 63.19909 * 3 2 1 29 29 H 1.08998 * 109.49164 * 61.56920 * 4 3 2 30 30 H 1.08999 * 109.48824 * 181.61025 * 4 3 2 31 31 H 1.08996 * 109.46824 * 290.07547 * 6 5 4 32 32 H 1.09000 * 109.46502 * 50.07514 * 6 5 4 33 33 H 1.09001 * 109.46705 * 170.07255 * 6 5 4 34 34 H 1.09002 * 109.47410 * 294.81320 * 9 7 5 35 35 H 1.08993 * 109.47129 * 174.81127 * 9 7 5 36 36 H 1.00905 * 111.00365 * 303.96088 * 10 9 7 37 37 H 1.08998 * 109.47170 * 60.00480 * 11 10 9 38 38 H 1.08995 * 109.47474 * 300.00460 * 11 10 9 39 39 H 1.09001 * 109.47103 * 305.00802 * 12 11 10 40 40 H 1.08995 * 109.47237 * 185.00127 * 12 11 10 41 41 H 1.08993 * 109.46833 * 60.00464 * 14 13 12 42 42 H 1.09000 * 109.46870 * 299.99921 * 14 13 12 43 43 H 0.96999 * 120.00204 * 180.02562 * 18 17 15 44 44 H 1.09000 * 109.49015 * 56.84256 * 23 2 1 45 45 H 1.09006 * 109.48673 * 296.78691 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5234 1.3291 -0.0803 5 7 4.0501 0.5660 1.0598 6 6 5.5191 0.5660 1.0598 7 6 3.5234 -0.8060 1.0598 8 1 3.8254 -1.3117 0.1426 9 6 4.0769 -1.5653 2.2673 10 7 3.7751 -0.8184 3.4957 11 6 4.2922 -1.5194 4.6785 12 6 3.9588 -0.7133 5.9355 13 8 2.5413 -0.6699 6.1114 14 6 2.1207 0.0628 7.2640 15 6 0.6163 0.0426 7.3508 16 1 0.0391 -0.4780 6.6010 17 6 -0.0230 0.6888 8.3873 18 7 -1.3359 0.6708 8.4634 19 14 0.9753 1.5887 9.6846 20 1 1.1806 2.9974 9.2622 21 1 0.2460 1.5609 10.9779 22 1 2.2931 0.9230 9.8450 23 6 1.9957 -0.7632 1.1400 24 1 -0.3634 0.4537 0.9221 25 1 -0.3633 0.5717 -0.8540 26 1 -0.3633 -1.0254 -0.0681 27 1 1.6013 1.9129 -0.8602 28 1 1.6934 1.8775 0.9172 29 1 3.8253 0.8481 -1.0106 30 1 3.9176 2.3449 -0.0516 31 1 5.8824 -0.0399 0.2298 32 1 5.8823 1.5878 0.9501 33 1 5.8823 0.1501 1.9996 34 1 5.1566 -1.6741 2.1644 35 1 3.6157 -2.5514 2.3190 36 1 4.1370 0.1221 3.4453 37 1 5.3733 -1.6283 4.5925 38 1 3.8321 -2.5051 4.7468 39 1 4.3428 0.3013 5.8290 40 1 4.4183 -1.1865 6.8032 41 1 2.4667 1.0934 7.1855 42 1 2.5421 -0.3949 8.1591 43 1 -1.7858 1.1257 9.1924 44 1 1.6013 -1.7789 1.1110 45 1 1.6936 -0.2820 2.0704 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395308544.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:54 Heat of formation + Delta-G solvation = -24.600766 kcal Electronic energy + Delta-G solvation = -21842.802934 eV Core-core repulsion = 18702.702280 eV Total energy + Delta-G solvation = -3140.100655 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.200 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.68803 -37.20864 -36.00997 -34.81904 -32.61067 -31.62471 -29.42231 -28.78110 -27.22989 -25.45004 -24.96767 -23.24873 -21.79220 -21.55270 -21.41498 -19.45427 -16.85621 -16.20448 -16.08730 -15.62593 -15.53950 -15.14345 -14.84833 -14.60762 -14.47057 -14.17027 -13.89013 -13.44621 -13.36147 -12.65047 -12.57859 -12.49826 -12.25772 -12.09166 -11.91254 -11.78802 -11.49745 -11.43716 -11.15287 -10.89533 -10.80871 -10.68777 -10.60108 -10.32540 -9.80949 -9.10073 -8.76351 -8.50527 -8.37949 -8.28464 -8.02556 -6.05652 -4.03584 3.28356 3.34914 3.36746 3.72951 3.93972 4.37741 4.40574 4.72506 4.78630 4.84847 4.96076 5.18516 5.24028 5.25780 5.25963 5.33478 5.42861 5.43771 5.53014 5.56329 5.57984 5.64107 5.66772 5.72655 5.76195 5.90388 5.92140 5.94339 5.98039 6.01924 6.25262 6.30841 6.68036 6.84907 6.87393 7.06829 7.08214 7.09324 7.29704 7.67277 7.73529 8.13367 8.76188 9.07846 9.54469 11.07623 Molecular weight = 271.20amu Principal moments of inertia in cm(-1) A = 0.017996 B = 0.004315 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.530750 B = 6487.561194 C = 7291.907828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.550 5.550 3 C 0.054 3.946 4 C 0.062 3.938 5 N -0.536 5.536 6 C 0.023 3.977 7 C 0.093 3.907 8 H 0.047 0.953 9 C 0.066 3.934 10 N -0.666 5.666 11 C 0.065 3.935 12 C 0.062 3.938 13 O -0.364 6.364 14 C 0.167 3.833 15 C -0.513 4.513 16 H 0.082 0.918 17 C 0.071 3.929 18 N -0.898 5.898 19 Si 0.875 3.125 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.267 1.267 23 C 0.064 3.936 24 H 0.032 0.968 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.047 0.953 29 H 0.038 0.962 30 H 0.078 0.922 31 H 0.024 0.976 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.025 0.975 35 H 0.076 0.924 36 H 0.349 0.651 37 H 0.030 0.970 38 H 0.077 0.923 39 H 0.034 0.966 40 H 0.039 0.961 41 H -0.004 1.004 42 H -0.001 1.001 43 H 0.265 0.735 44 H 0.075 0.925 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.327 -0.906 -17.502 22.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.275 5.275 3 C -0.074 4.074 4 C -0.067 4.067 5 N -0.261 5.261 6 C -0.125 4.125 7 C -0.015 4.015 8 H 0.065 0.935 9 C -0.064 4.064 10 N -0.300 5.300 11 C -0.065 4.065 12 C -0.016 4.016 13 O -0.283 6.283 14 C 0.092 3.908 15 C -0.551 4.551 16 H 0.101 0.899 17 C -0.130 4.130 18 N -0.536 5.536 19 Si 0.702 3.298 20 H -0.200 1.200 21 H -0.209 1.209 22 H -0.192 1.192 23 C -0.064 4.064 24 H 0.051 0.949 25 H 0.082 0.918 26 H 0.086 0.914 27 H 0.093 0.907 28 H 0.066 0.934 29 H 0.056 0.944 30 H 0.096 0.904 31 H 0.043 0.957 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.043 0.957 35 H 0.094 0.906 36 H 0.170 0.830 37 H 0.048 0.952 38 H 0.095 0.905 39 H 0.053 0.947 40 H 0.058 0.942 41 H 0.014 0.986 42 H 0.017 0.983 43 H 0.075 0.925 44 H 0.094 0.906 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 12.391 -1.192 -17.448 21.433 hybrid contribution 1.607 0.842 0.876 2.015 sum 13.998 -0.349 -16.572 21.696 Atomic orbital electron populations 1.22323 0.87062 1.02222 1.00725 1.62221 1.08062 1.13612 1.43612 1.22154 0.94156 0.89925 1.01204 1.22117 0.94805 0.98156 0.91588 1.62079 1.07173 1.14009 1.42868 1.22386 0.87755 1.01631 1.00719 1.21732 0.95238 0.88077 0.96491 0.93470 1.21977 0.97126 0.97522 0.89800 1.60212 1.63938 1.05693 1.00107 1.21956 0.95757 0.98833 0.89915 1.22297 0.85905 0.97892 0.95500 1.88019 1.17702 1.74975 1.47555 1.20577 0.96697 0.89915 0.83610 1.20902 0.88723 1.34013 1.11462 0.89948 1.24764 0.94837 0.95987 0.97431 1.69882 1.07463 1.43796 1.32505 0.86858 0.80680 0.80661 0.81569 1.20003 1.20868 1.19186 1.22144 0.92821 0.98594 0.92869 0.94893 0.91758 0.91398 0.90679 0.93431 0.94397 0.90410 0.95733 0.91435 0.91567 0.95735 0.90553 0.83041 0.95175 0.90461 0.94733 0.94243 0.98629 0.98319 0.92479 0.90649 0.91259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.60 60.06 0.58 0.86 16 2 N -0.55 -6.81 4.97 -242.76 -1.21 -8.02 16 3 C 0.05 0.62 5.62 -3.77 -0.02 0.59 16 4 C 0.06 0.64 5.61 -3.77 -0.02 0.62 16 5 N -0.54 -6.07 3.91 -234.73 -0.92 -6.99 16 6 C 0.02 0.22 8.80 60.06 0.53 0.74 16 7 C 0.09 1.10 2.31 -67.65 -0.16 0.95 16 8 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 9 C 0.07 0.79 4.73 -3.82 -0.02 0.77 16 10 N -0.67 -9.75 5.87 -113.78 -0.67 -10.42 16 11 C 0.06 0.94 6.07 -3.82 -0.02 0.92 16 12 C 0.06 1.11 6.22 37.16 0.23 1.34 16 13 O -0.36 -8.74 10.27 -35.23 -0.36 -9.10 16 14 C 0.17 4.39 4.76 36.01 0.17 4.56 16 15 C -0.51 -15.65 9.99 -34.44 -0.34 -16.00 16 16 H 0.08 2.76 8.06 -52.49 -0.42 2.34 16 17 C 0.07 2.13 5.47 -17.82 -0.10 2.04 16 18 N -0.90 -28.19 13.96 55.43 0.77 -27.42 16 19 Si 0.88 21.84 27.47 -169.99 -4.67 17.17 16 20 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 23 C 0.06 0.85 4.81 -3.77 -0.02 0.83 16 24 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 26 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.07 0.73 8.13 -51.93 -0.42 0.31 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.71 8.07 -51.93 -0.42 0.29 16 31 H 0.02 0.21 8.12 -51.93 -0.42 -0.21 16 32 H 0.07 0.56 8.03 -51.93 -0.42 0.14 16 33 H 0.07 0.62 6.34 -51.93 -0.33 0.29 16 34 H 0.02 0.26 6.80 -51.93 -0.35 -0.09 16 35 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.35 5.16 7.30 -39.29 -0.29 4.87 16 37 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.00 -0.10 7.57 -51.93 -0.39 -0.49 16 42 H 0.00 -0.02 7.20 -51.93 -0.37 -0.40 16 43 H 0.27 7.71 8.31 -40.82 -0.34 7.37 16 44 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 45 H 0.07 1.16 7.72 -51.93 -0.40 0.76 16 LS Contribution 350.53 15.07 5.28 5.28 Total: -1.00 -32.52 350.53 -9.44 -41.96 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -8.48 Total: -0.69 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: 0.81 Total: -1.77 kcal Atomic # 7 Polarization: -50.83 SS G_CDS: -2.02 Total: -52.85 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: -0.36 Total: -9.10 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.67 Total: 17.17 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.52 -9.44 -41.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395308544.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.355 kcal (2) G-P(sol) polarization free energy of solvation -32.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds