Wall clock time and date at job start Mon Mar 30 2020 06:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46959 * 110.99891 * 2 1 4 4 C 1.53043 * 109.36485 * 183.18757 * 3 2 1 5 5 N 1.46960 * 109.36711 * 301.59707 * 4 3 2 6 6 C 1.46900 * 111.00290 * 183.18663 * 5 4 3 7 7 C 1.46961 * 110.87370 * 59.32040 * 5 4 3 8 8 H 1.08999 * 109.50615 * 60.66476 * 7 5 4 9 9 C 1.53004 * 109.48654 * 180.71311 * 7 5 4 10 10 N 1.46903 * 109.47131 * 54.80665 * 9 7 5 11 11 C 1.46896 * 111.00051 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47182 * 180.02562 * 11 10 9 13 13 O 1.42906 * 109.46896 * 65.00106 * 12 11 10 14 14 C 1.42904 * 114.00038 * 179.97438 * 13 12 11 15 15 C 1.50705 * 109.46874 * 180.02562 * 14 13 12 16 16 H 1.07996 * 120.00128 * 0.02562 * 15 14 13 17 17 C 1.37871 * 119.99407 * 180.02562 * 15 14 13 18 18 N 1.31521 * 119.99860 * 180.02562 * 17 15 14 19 19 Si 1.86795 * 120.00548 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.47400 * 89.99822 * 19 17 15 21 21 H 1.48504 * 109.47451 * 210.00257 * 19 17 15 22 22 H 1.48508 * 109.46967 * 330.00054 * 19 17 15 23 23 C 1.46952 * 111.00177 * 123.79915 * 2 1 3 24 24 H 1.09000 * 109.47616 * 296.19956 * 1 2 3 25 25 H 1.09004 * 109.46838 * 56.20159 * 1 2 3 26 26 H 1.08997 * 109.46949 * 176.19765 * 1 2 3 27 27 H 1.08999 * 109.48740 * 303.15710 * 3 2 1 28 28 H 1.09000 * 109.48766 * 63.19909 * 3 2 1 29 29 H 1.08998 * 109.49164 * 61.56920 * 4 3 2 30 30 H 1.08999 * 109.48824 * 181.61025 * 4 3 2 31 31 H 1.08996 * 109.46824 * 290.07547 * 6 5 4 32 32 H 1.09000 * 109.46502 * 50.07514 * 6 5 4 33 33 H 1.09001 * 109.46705 * 170.07255 * 6 5 4 34 34 H 1.09002 * 109.47410 * 294.81320 * 9 7 5 35 35 H 1.08993 * 109.47129 * 174.81127 * 9 7 5 36 36 H 1.00905 * 111.00365 * 303.96088 * 10 9 7 37 37 H 1.08998 * 109.47170 * 60.00480 * 11 10 9 38 38 H 1.08995 * 109.47474 * 300.00460 * 11 10 9 39 39 H 1.09001 * 109.47103 * 305.00802 * 12 11 10 40 40 H 1.08995 * 109.47237 * 185.00127 * 12 11 10 41 41 H 1.08993 * 109.46833 * 60.00464 * 14 13 12 42 42 H 1.09000 * 109.46870 * 299.99921 * 14 13 12 43 43 H 0.96999 * 120.00204 * 180.02562 * 18 17 15 44 44 H 1.09000 * 109.49015 * 56.84256 * 23 2 1 45 45 H 1.09006 * 109.48673 * 296.78691 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5234 1.3291 -0.0803 5 7 4.0501 0.5660 1.0598 6 6 5.5191 0.5660 1.0598 7 6 3.5234 -0.8060 1.0598 8 1 3.8254 -1.3117 0.1426 9 6 4.0769 -1.5653 2.2673 10 7 3.7751 -0.8184 3.4957 11 6 4.2922 -1.5194 4.6785 12 6 3.9588 -0.7133 5.9355 13 8 2.5413 -0.6699 6.1114 14 6 2.1207 0.0628 7.2640 15 6 0.6163 0.0426 7.3508 16 1 0.0391 -0.4780 6.6010 17 6 -0.0230 0.6888 8.3873 18 7 -1.3359 0.6708 8.4634 19 14 0.9753 1.5887 9.6846 20 1 1.1806 2.9974 9.2622 21 1 0.2460 1.5609 10.9779 22 1 2.2931 0.9230 9.8450 23 6 1.9957 -0.7632 1.1400 24 1 -0.3634 0.4537 0.9221 25 1 -0.3633 0.5717 -0.8540 26 1 -0.3633 -1.0254 -0.0681 27 1 1.6013 1.9129 -0.8602 28 1 1.6934 1.8775 0.9172 29 1 3.8253 0.8481 -1.0106 30 1 3.9176 2.3449 -0.0516 31 1 5.8824 -0.0399 0.2298 32 1 5.8823 1.5878 0.9501 33 1 5.8823 0.1501 1.9996 34 1 5.1566 -1.6741 2.1644 35 1 3.6157 -2.5514 2.3190 36 1 4.1370 0.1221 3.4453 37 1 5.3733 -1.6283 4.5925 38 1 3.8321 -2.5051 4.7468 39 1 4.3428 0.3013 5.8290 40 1 4.4183 -1.1865 6.8032 41 1 2.4667 1.0934 7.1855 42 1 2.5421 -0.3949 8.1591 43 1 -1.7858 1.1257 9.1924 44 1 1.6013 -1.7789 1.1110 45 1 1.6936 -0.2820 2.0704 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395308544.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:53 Heat of formation + Delta-G solvation = -51.190910 kcal Electronic energy + Delta-G solvation = -21843.955970 eV Core-core repulsion = 18702.702280 eV Total energy + Delta-G solvation = -3141.253690 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.200 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.62065 -38.79802 -37.16574 -35.89968 -34.81106 -32.76179 -30.57467 -30.19675 -28.88944 -26.38529 -25.99464 -24.15532 -23.94214 -22.83073 -22.40599 -20.41017 -19.05414 -17.58909 -17.09146 -16.94136 -16.81488 -16.44588 -16.08939 -15.96821 -15.57405 -15.46316 -14.86852 -14.76247 -14.69990 -14.49431 -13.83262 -13.59878 -13.41578 -13.14739 -13.08920 -12.90894 -12.80134 -12.68763 -12.49865 -12.34222 -12.20934 -11.91452 -11.79795 -11.65871 -11.49467 -11.29677 -10.91272 -10.28217 -9.45528 -9.22010 -9.07758 -8.36326 -6.43757 1.32574 1.36220 1.47094 2.29971 2.88591 2.96164 2.97104 3.15676 3.35137 3.86786 3.93920 4.08472 4.24807 4.28068 4.32281 4.35464 4.39957 4.51035 4.55837 4.56609 4.61261 4.62274 4.66349 4.67545 4.72139 4.75208 4.82013 4.96762 4.97060 4.97757 5.01782 5.04541 5.06926 5.19045 5.46051 5.95251 5.95965 5.97192 6.09361 6.18645 6.29214 6.60218 6.64098 6.84404 7.21126 8.81224 Molecular weight = 271.20amu Principal moments of inertia in cm(-1) A = 0.017996 B = 0.004315 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.530750 B = 6487.561194 C = 7291.907828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.550 5.550 3 C 0.052 3.948 4 C 0.065 3.935 5 N -0.553 5.553 6 C 0.026 3.974 7 C 0.101 3.899 8 H 0.055 0.945 9 C 0.072 3.928 10 N -0.689 5.689 11 C 0.072 3.928 12 C 0.052 3.948 13 O -0.394 6.394 14 C 0.180 3.820 15 C -0.542 4.542 16 H 0.026 0.974 17 C 0.012 3.988 18 N -0.944 5.944 19 Si 0.958 3.042 20 H -0.260 1.260 21 H -0.272 1.272 22 H -0.245 1.245 23 C 0.068 3.932 24 H 0.010 0.990 25 H 0.084 0.916 26 H 0.072 0.928 27 H 0.094 0.906 28 H 0.021 0.979 29 H 0.045 0.955 30 H 0.093 0.907 31 H 0.033 0.967 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.047 0.953 35 H 0.073 0.927 36 H 0.348 0.652 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.045 0.955 40 H 0.056 0.944 41 H 0.006 0.994 42 H 0.010 0.990 43 H 0.273 0.727 44 H 0.072 0.928 45 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.309 -0.152 -17.552 23.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.274 5.274 3 C -0.076 4.076 4 C -0.063 4.063 5 N -0.279 5.279 6 C -0.122 4.122 7 C -0.008 4.008 8 H 0.073 0.927 9 C -0.058 4.058 10 N -0.323 5.323 11 C -0.057 4.057 12 C -0.025 4.025 13 O -0.313 6.313 14 C 0.104 3.896 15 C -0.580 4.580 16 H 0.044 0.956 17 C -0.186 4.186 18 N -0.584 5.584 19 Si 0.779 3.221 20 H -0.185 1.185 21 H -0.197 1.197 22 H -0.169 1.169 23 C -0.060 4.060 24 H 0.029 0.971 25 H 0.103 0.897 26 H 0.090 0.910 27 H 0.113 0.887 28 H 0.040 0.960 29 H 0.063 0.937 30 H 0.111 0.889 31 H 0.051 0.949 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.065 0.935 35 H 0.091 0.909 36 H 0.168 0.832 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.024 0.976 42 H 0.028 0.972 43 H 0.082 0.918 44 H 0.090 0.910 45 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 15.393 -0.453 -17.526 23.331 hybrid contribution 0.607 0.561 0.785 1.140 sum 16.000 0.108 -16.742 23.158 Atomic orbital electron populations 1.22373 0.86837 1.02690 1.00448 1.62310 1.08375 1.14176 1.42541 1.22243 0.95420 0.89204 1.00738 1.22129 0.93683 0.98970 0.91534 1.62057 1.08683 1.13573 1.43576 1.22401 0.86164 1.02569 1.01026 1.21617 0.93690 0.88779 0.96733 0.92683 1.21962 0.98351 0.96901 0.88621 1.60160 1.64948 1.06012 1.01196 1.21894 0.97756 0.97516 0.88514 1.22682 0.82529 0.99408 0.97852 1.87977 1.21903 1.74748 1.46679 1.20272 0.93672 0.90780 0.84917 1.21166 0.91328 1.34545 1.10979 0.95559 1.25859 0.96149 0.96531 1.00026 1.70045 1.09818 1.44724 1.33796 0.85582 0.79471 0.79397 0.77694 1.18502 1.19709 1.16867 1.22037 0.94562 0.98037 0.91386 0.97134 0.89696 0.90956 0.88735 0.96020 0.93728 0.88899 0.94853 0.90350 0.91589 0.93514 0.90885 0.83195 0.91427 0.91416 0.93707 0.92560 0.97637 0.97213 0.91847 0.90971 0.95427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.58 9.60 127.69 1.23 1.81 16 2 N -0.55 -13.69 4.97 -921.97 -4.58 -18.27 16 3 C 0.05 1.17 5.62 86.31 0.49 1.66 16 4 C 0.06 1.24 5.61 86.31 0.48 1.73 16 5 N -0.55 -11.80 3.91 -896.56 -3.51 -15.31 16 6 C 0.03 0.42 8.80 127.69 1.12 1.54 16 7 C 0.10 2.30 2.31 44.92 0.10 2.40 16 8 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 9 C 0.07 1.61 4.73 86.30 0.41 2.02 16 10 N -0.69 -19.76 5.87 -513.89 -3.02 -22.78 16 11 C 0.07 1.99 6.07 86.31 0.52 2.51 16 12 C 0.05 1.79 6.22 71.98 0.45 2.24 16 13 O -0.39 -19.11 10.27 -148.98 -1.53 -20.64 16 14 C 0.18 9.37 4.76 71.24 0.34 9.71 16 15 C -0.54 -34.31 9.99 25.60 0.26 -34.05 16 16 H 0.03 1.88 8.06 -2.91 -0.02 1.86 16 17 C 0.01 0.72 5.47 84.65 0.46 1.19 16 18 N -0.94 -60.92 13.96 21.45 0.30 -60.62 16 19 Si 0.96 44.46 27.47 68.60 1.88 46.34 16 20 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 21 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 22 H -0.25 -10.47 6.54 99.48 0.65 -9.82 16 23 C 0.07 1.89 4.81 86.31 0.41 2.31 16 24 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 25 H 0.08 1.62 8.13 -2.38 -0.02 1.60 16 26 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.09 1.73 8.13 -2.39 -0.02 1.71 16 28 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.09 1.49 8.07 -2.39 -0.02 1.48 16 31 H 0.03 0.48 8.12 -2.39 -0.02 0.46 16 32 H 0.08 1.08 8.03 -2.39 -0.02 1.06 16 33 H 0.07 1.05 6.34 -2.39 -0.02 1.04 16 34 H 0.05 0.86 6.80 -2.39 -0.02 0.84 16 35 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.35 9.97 7.30 -89.69 -0.65 9.32 16 37 H 0.07 1.38 8.14 -2.39 -0.02 1.37 16 38 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.01 0.30 7.57 -2.39 -0.02 0.28 16 42 H 0.01 0.50 7.20 -2.39 -0.02 0.49 16 43 H 0.27 16.08 8.31 -92.71 -0.77 15.31 16 44 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 45 H 0.03 0.99 7.72 -2.38 -0.02 0.97 16 Total: -1.00 -73.37 350.53 -3.96 -77.32 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: 0.22 Total: 18.89 kcal Atomic # 6 Polarization: -11.22 SS G_CDS: 6.28 Total: -4.95 kcal Atomic # 7 Polarization: -106.17 SS G_CDS: -10.81 Total: -116.98 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -1.53 Total: -20.64 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 1.88 Total: 46.34 kcal Total: -73.37 -3.96 -77.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395308544.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.130 kcal (2) G-P(sol) polarization free energy of solvation -73.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds