Wall clock time and date at job start Mon Mar 30 2020 06:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00016 * 2 1 4 4 H 1.48506 * 109.46816 * 239.99600 * 3 2 1 5 5 H 1.48499 * 109.47049 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47655 * 119.99649 * 3 2 1 7 7 C 1.37872 * 120.00029 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00404 * 180.02562 * 7 2 1 9 9 S 1.76205 * 120.00186 * 0.02562 * 7 2 1 10 10 O 1.42101 * 106.40042 * 66.46185 * 9 7 2 11 11 O 1.42092 * 106.40373 * 293.54198 * 9 7 2 12 12 N 1.65599 * 107.21815 * 179.97438 * 9 7 2 13 13 C 1.31719 * 119.99557 * 179.97438 * 12 9 7 14 14 C 1.46978 * 121.34376 * 0.22065 * 13 12 9 15 15 C 1.34521 * 118.57407 * 180.27379 * 14 13 12 16 16 N 1.36125 * 121.63031 * 359.72549 * 15 14 13 17 17 H 0.97001 * 118.43179 * 180.02562 * 16 15 14 18 18 C 1.34383 * 123.13861 * 0.02562 * 16 15 14 19 19 C 1.36728 * 121.14113 * 0.02562 * 18 16 15 20 20 C 1.46900 * 120.90189 * 179.97438 * 19 18 16 21 21 O 1.21573 * 120.00168 * 179.97438 * 20 19 18 22 22 O 1.34823 * 119.99944 * 359.97438 * 20 19 18 23 23 H 0.96999 * 120.00475 * 0.02562 * 1 2 3 24 24 H 1.08000 * 120.71239 * 359.97438 * 14 13 12 25 25 H 1.07990 * 119.18432 * 179.75152 * 15 14 13 26 26 H 1.07994 * 119.42725 * 179.97438 * 18 16 15 27 27 H 0.96700 * 117.00223 * 0.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 16 1.1235 -2.7200 0.0005 10 8 0.4519 -2.7956 -1.2495 11 8 0.4509 -2.7950 1.2499 12 7 2.2483 -3.9354 0.0005 13 6 1.8584 -5.1935 0.0010 14 6 0.4330 -5.5522 -0.0032 15 6 0.0973 -6.8548 0.0032 16 7 1.0415 -7.8353 0.0079 17 1 0.7474 -8.7597 0.0120 18 6 2.3616 -7.5840 0.0070 19 6 2.8374 -6.3022 0.0017 20 6 4.2816 -6.0334 0.0013 21 8 4.6866 -4.8872 -0.0038 22 8 5.1579 -7.0580 0.0067 23 1 -0.4851 0.8400 -0.0004 24 1 -0.3285 -4.7863 -0.0065 25 1 -0.9471 -7.1294 0.0042 26 1 3.0588 -8.4088 0.0113 27 1 4.7885 -7.9517 0.0103 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397147422.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:31 Heat of formation + Delta-G solvation = -106.906648 kcal Electronic energy + Delta-G solvation = -18648.251148 eV Core-core repulsion = 15306.283273 eV Total energy + Delta-G solvation = -3341.967875 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 272.034 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.75311 -39.12467 -36.27428 -35.11755 -34.92257 -33.74210 -32.85431 -32.09429 -30.12423 -25.96246 -24.87229 -23.08557 -21.93254 -20.06369 -18.75779 -17.72588 -17.67011 -16.40488 -16.18244 -15.48290 -15.47867 -14.92709 -14.78706 -14.46790 -13.90142 -13.85857 -13.47051 -13.20933 -12.39020 -11.79244 -11.57996 -11.20957 -11.19109 -11.02252 -10.88742 -10.45542 -10.12767 -10.03453 -9.97953 -9.96572 -9.05777 -8.59481 -8.45529 -7.82455 -6.53892 -5.09464 0.65517 1.17432 2.48476 2.55530 2.77122 3.24951 3.25061 3.35551 3.35611 3.59870 3.91011 4.24076 4.42509 4.49473 4.76303 4.82528 4.94430 5.37957 5.49028 5.54638 5.95392 6.11537 6.49262 6.66467 7.11265 7.44919 7.49304 7.82714 8.05220 8.28911 9.06816 10.42043 Molecular weight = 272.03amu Principal moments of inertia in cm(-1) A = 0.026916 B = 0.006602 C = 0.005484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.009618 B = 4240.385068 C = 5104.580008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.128 3.872 3 Si 0.926 3.074 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.986 4.986 8 H 0.109 0.891 9 S 2.652 3.348 10 O -1.024 7.024 11 O -1.023 7.023 12 N -0.928 5.928 13 C 0.359 3.641 14 C -0.236 4.236 15 C 0.118 3.882 16 N -0.589 5.589 17 H 0.423 0.577 18 C 0.177 3.823 19 C -0.255 4.255 20 C 0.536 3.464 21 O -0.408 6.408 22 O -0.515 6.515 23 H 0.289 0.711 24 H 0.156 0.844 25 H 0.175 0.825 26 H 0.173 0.827 27 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.301 -22.643 0.043 22.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.088 4.088 3 Si 0.750 3.250 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.187 1.187 7 C -1.120 5.120 8 H 0.127 0.873 9 S 2.756 3.244 10 O -1.013 7.013 11 O -1.012 7.012 12 N -0.757 5.757 13 C 0.181 3.819 14 C -0.264 4.264 15 C -0.007 4.007 16 N -0.194 5.194 17 H 0.259 0.741 18 C 0.043 3.957 19 C -0.270 4.270 20 C 0.374 3.626 21 O -0.287 6.287 22 O -0.326 6.326 23 H 0.099 0.901 24 H 0.174 0.826 25 H 0.192 0.808 26 H 0.189 0.811 27 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 1.463 -20.819 0.038 20.871 hybrid contribution -0.327 0.182 0.004 0.374 sum 1.136 -20.638 0.042 20.669 Atomic orbital electron populations 1.69910 1.06782 1.30540 1.41066 1.24807 0.94563 1.00897 0.88558 0.86119 0.79762 0.79127 0.80017 1.18701 1.20177 1.18698 1.29988 1.06420 1.09937 1.65689 0.87283 1.02149 0.72540 0.76202 0.73474 1.93375 1.73916 1.88319 1.45641 1.93374 1.73863 1.88323 1.45686 1.74708 1.60062 1.10536 1.30373 1.20269 0.88309 0.90139 0.83229 1.23457 0.97138 0.97311 1.08484 1.21475 0.94184 0.88065 0.96963 1.40687 1.04232 1.10720 1.63759 0.74139 1.21693 0.85523 0.97377 0.91079 1.20826 0.94687 0.91562 1.19881 1.19440 0.83375 0.84439 0.75393 1.91047 1.79574 1.17121 1.40971 1.84762 1.41281 1.18530 1.88003 0.90090 0.82641 0.80812 0.81054 0.74697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -27.32 13.19 55.43 0.73 -26.59 15 2 C 0.13 4.02 5.46 -17.82 -0.10 3.92 15 3 Si 0.93 23.08 29.54 -169.99 -5.02 18.06 15 4 H -0.26 -6.33 7.11 56.52 0.40 -5.93 15 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 15 6 H -0.26 -6.33 7.11 56.52 0.40 -5.93 15 7 C -0.99 -32.15 9.74 30.60 0.30 -31.85 15 8 H 0.11 3.42 7.81 -52.48 -0.41 3.01 15 9 S 2.65 82.51 3.54 -107.50 -0.38 82.13 15 10 O -1.02 -33.22 17.27 -57.17 -0.99 -34.20 15 11 O -1.02 -33.21 17.29 -57.17 -0.99 -34.20 15 12 N -0.93 -24.89 9.36 34.62 0.32 -24.57 15 13 C 0.36 7.43 6.96 -80.42 -0.56 6.87 15 14 C -0.24 -4.06 9.03 -37.36 -0.34 -4.39 15 15 C 0.12 1.06 11.11 -16.96 -0.19 0.87 15 16 N -0.59 -2.75 5.16 -12.99 -0.07 -2.81 15 17 H 0.42 -0.30 8.86 -40.82 -0.36 -0.66 15 18 C 0.18 1.06 10.64 -16.98 -0.18 0.88 15 19 C -0.26 -3.59 6.03 -102.98 -0.62 -4.21 15 20 C 0.54 8.58 8.34 34.24 0.29 8.87 15 21 O -0.41 -9.32 16.28 -19.32 -0.31 -9.63 15 22 O -0.52 -5.34 13.49 -40.83 -0.55 -5.89 15 23 H 0.29 8.26 8.31 -40.82 -0.34 7.92 15 24 H 0.16 3.16 6.17 -52.49 -0.32 2.84 15 25 H 0.17 0.78 8.06 -52.49 -0.42 0.36 15 26 H 0.17 -0.17 6.30 -52.49 -0.33 -0.50 15 27 H 0.40 0.87 6.90 45.56 0.31 1.19 15 LS Contribution 266.17 15.07 4.01 4.01 Total: -1.00 -51.15 266.17 -5.31 -56.46 By element: Atomic # 1 Polarization: -3.04 SS G_CDS: -0.67 Total: -3.71 kcal Atomic # 6 Polarization: -17.64 SS G_CDS: -1.40 Total: -19.05 kcal Atomic # 7 Polarization: -54.96 SS G_CDS: 0.99 Total: -53.97 kcal Atomic # 8 Polarization: -81.08 SS G_CDS: -2.84 Total: -83.93 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -5.02 Total: 18.06 kcal Atomic # 16 Polarization: 82.51 SS G_CDS: -0.38 Total: 82.13 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -51.15 -5.31 -56.46 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397147422.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.447 kcal (2) G-P(sol) polarization free energy of solvation -51.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds