Wall clock time and date at job start Mon Mar 30 2020 06:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00016 * 2 1 4 4 H 1.48506 * 109.46816 * 239.99600 * 3 2 1 5 5 H 1.48499 * 109.47049 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47655 * 119.99649 * 3 2 1 7 7 C 1.37872 * 120.00029 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00404 * 180.02562 * 7 2 1 9 9 S 1.76205 * 120.00186 * 0.02562 * 7 2 1 10 10 O 1.42101 * 106.40042 * 66.46185 * 9 7 2 11 11 O 1.42092 * 106.40373 * 293.54198 * 9 7 2 12 12 N 1.65599 * 107.21815 * 179.97438 * 9 7 2 13 13 C 1.31719 * 119.99557 * 179.97438 * 12 9 7 14 14 C 1.46978 * 121.34376 * 0.22065 * 13 12 9 15 15 C 1.34521 * 118.57407 * 180.27379 * 14 13 12 16 16 N 1.36125 * 121.63031 * 359.72549 * 15 14 13 17 17 H 0.97001 * 118.43179 * 180.02562 * 16 15 14 18 18 C 1.34383 * 123.13861 * 0.02562 * 16 15 14 19 19 C 1.36728 * 121.14113 * 0.02562 * 18 16 15 20 20 C 1.46900 * 120.90189 * 179.97438 * 19 18 16 21 21 O 1.21573 * 120.00168 * 179.97438 * 20 19 18 22 22 O 1.34823 * 119.99944 * 359.97438 * 20 19 18 23 23 H 0.96999 * 120.00475 * 0.02562 * 1 2 3 24 24 H 1.08000 * 120.71239 * 359.97438 * 14 13 12 25 25 H 1.07990 * 119.18432 * 179.75152 * 15 14 13 26 26 H 1.07994 * 119.42725 * 179.97438 * 18 16 15 27 27 H 0.96700 * 117.00223 * 0.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 16 1.1235 -2.7200 0.0005 10 8 0.4519 -2.7956 -1.2495 11 8 0.4509 -2.7950 1.2499 12 7 2.2483 -3.9354 0.0005 13 6 1.8584 -5.1935 0.0010 14 6 0.4330 -5.5522 -0.0032 15 6 0.0973 -6.8548 0.0032 16 7 1.0415 -7.8353 0.0079 17 1 0.7474 -8.7597 0.0120 18 6 2.3616 -7.5840 0.0070 19 6 2.8374 -6.3022 0.0017 20 6 4.2816 -6.0334 0.0013 21 8 4.6866 -4.8872 -0.0038 22 8 5.1579 -7.0580 0.0067 23 1 -0.4851 0.8400 -0.0004 24 1 -0.3285 -4.7863 -0.0065 25 1 -0.9471 -7.1294 0.0042 26 1 3.0588 -8.4088 0.0113 27 1 4.7885 -7.9517 0.0103 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397147422.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:31 Heat of formation + Delta-G solvation = -158.150503 kcal Electronic energy + Delta-G solvation = -18650.473248 eV Core-core repulsion = 15306.283273 eV Total energy + Delta-G solvation = -3344.189975 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 272.034 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.75405 -40.19488 -37.44292 -37.25308 -36.58885 -36.00307 -35.14764 -33.08351 -31.40306 -28.35866 -25.90860 -24.37365 -23.00838 -21.10236 -20.64705 -19.40346 -18.62323 -18.39817 -17.47720 -17.16172 -16.62599 -16.60700 -16.21078 -16.21025 -15.51104 -15.29525 -14.75990 -14.37326 -13.97587 -13.59152 -13.27583 -13.13984 -12.99932 -12.98463 -12.48856 -12.38706 -12.34990 -12.32671 -11.32150 -11.31589 -10.95694 -10.92838 -10.14505 -9.14971 -8.85198 -7.55778 -0.28295 0.03782 0.51716 1.22846 1.28849 1.42191 1.55658 1.76649 2.17377 2.39317 2.41631 2.51176 3.08873 3.33813 3.47082 3.66308 3.83740 3.92053 4.27200 4.39358 4.64545 4.84413 4.91815 5.15273 5.49304 5.78778 6.15822 6.37807 6.66356 6.73635 7.15785 8.14952 Molecular weight = 272.03amu Principal moments of inertia in cm(-1) A = 0.026916 B = 0.006602 C = 0.005484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.009618 B = 4240.385068 C = 5104.580008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.063 3.937 3 Si 0.999 3.001 4 H -0.251 1.251 5 H -0.244 1.244 6 H -0.251 1.251 7 C -1.032 5.032 8 H 0.102 0.898 9 S 2.656 3.344 10 O -1.067 7.067 11 O -1.067 7.067 12 N -0.994 5.994 13 C 0.340 3.660 14 C -0.328 4.328 15 C 0.203 3.797 16 N -0.543 5.543 17 H 0.465 0.535 18 C 0.261 3.739 19 C -0.312 4.312 20 C 0.548 3.452 21 O -0.502 6.502 22 O -0.501 6.501 23 H 0.302 0.698 24 H 0.107 0.893 25 H 0.237 0.763 26 H 0.270 0.730 27 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.541 -28.377 0.064 28.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.149 4.149 3 Si 0.815 3.185 4 H -0.175 1.175 5 H -0.167 1.167 6 H -0.175 1.175 7 C -1.166 5.166 8 H 0.121 0.879 9 S 2.761 3.239 10 O -1.056 7.056 11 O -1.056 7.056 12 N -0.835 5.835 13 C 0.173 3.827 14 C -0.356 4.356 15 C 0.075 3.925 16 N -0.148 5.148 17 H 0.311 0.689 18 C 0.123 3.877 19 C -0.326 4.326 20 C 0.390 3.610 21 O -0.388 6.388 22 O -0.316 6.316 23 H 0.112 0.888 24 H 0.125 0.875 25 H 0.253 0.747 26 H 0.285 0.715 27 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges 1.617 -26.768 0.060 26.817 hybrid contribution -0.504 1.173 0.000 1.277 sum 1.113 -25.595 0.060 25.619 Atomic orbital electron populations 1.69979 1.08634 1.32462 1.41437 1.26230 0.95771 1.05599 0.87274 0.85092 0.78901 0.73733 0.80808 1.17485 1.16658 1.17472 1.30456 1.06503 1.12579 1.67078 0.87940 1.01821 0.72752 0.77138 0.72222 1.93247 1.76155 1.89147 1.47059 1.93246 1.76104 1.89152 1.47097 1.74746 1.55257 1.12128 1.41373 1.21493 0.91683 0.90207 0.79353 1.23121 0.94673 1.00227 1.17604 1.22156 0.97479 0.85502 0.87349 1.41167 1.03645 1.12233 1.57784 0.68949 1.22869 0.86844 0.96265 0.81721 1.20563 0.92859 0.92488 1.26709 1.19593 0.84225 0.84265 0.72953 1.91018 1.81000 1.21161 1.45614 1.84711 1.40214 1.19830 1.86819 0.88831 0.87533 0.74688 0.71503 0.70362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -61.14 13.19 21.44 0.28 -60.85 15 2 C 0.06 4.19 5.46 84.65 0.46 4.66 15 3 Si 1.00 49.37 29.54 68.60 2.03 51.40 15 4 H -0.25 -11.82 7.11 99.48 0.71 -11.11 15 5 H -0.24 -10.60 7.11 99.48 0.71 -9.89 15 6 H -0.25 -11.81 7.11 99.48 0.71 -11.10 15 7 C -1.03 -73.77 9.74 67.73 0.66 -73.11 15 8 H 0.10 7.13 7.81 -2.91 -0.02 7.11 15 9 S 2.66 183.32 3.54 -56.49 -0.20 183.12 15 10 O -1.07 -76.87 17.27 -128.00 -2.21 -79.08 15 11 O -1.07 -76.84 17.29 -128.00 -2.21 -79.05 15 12 N -0.99 -58.96 9.36 -44.38 -0.42 -59.37 15 13 C 0.34 14.77 6.96 44.01 0.31 15.08 15 14 C -0.33 -11.49 9.03 23.71 0.21 -11.27 15 15 C 0.20 2.48 11.11 83.18 0.92 3.41 15 16 N -0.54 0.12 5.16 -195.01 -1.01 -0.88 15 17 H 0.47 -6.43 8.86 -92.71 -0.82 -7.25 15 18 C 0.26 0.84 10.64 83.95 0.89 1.74 15 19 C -0.31 -8.01 6.03 -18.80 -0.11 -8.12 15 20 C 0.55 17.16 8.34 70.09 0.58 17.74 15 21 O -0.50 -24.70 16.28 19.60 0.32 -24.38 15 22 O -0.50 -8.26 13.49 -57.35 -0.77 -9.03 15 23 H 0.30 18.15 8.31 -92.71 -0.77 17.38 15 24 H 0.11 4.84 6.17 -2.91 -0.02 4.82 15 25 H 0.24 0.21 8.06 -2.92 -0.02 0.18 15 26 H 0.27 -4.10 6.30 -2.91 -0.02 -4.12 15 27 H 0.43 -1.72 6.90 -74.06 -0.51 -2.23 15 Total: -1.00 -143.88 266.17 -0.32 -144.21 By element: Atomic # 1 Polarization: -16.14 SS G_CDS: -0.07 Total: -16.20 kcal Atomic # 6 Polarization: -53.81 SS G_CDS: 3.93 Total: -49.88 kcal Atomic # 7 Polarization: -119.97 SS G_CDS: -1.14 Total: -121.11 kcal Atomic # 8 Polarization: -186.66 SS G_CDS: -4.88 Total: -191.54 kcal Atomic # 14 Polarization: 49.37 SS G_CDS: 2.03 Total: 51.40 kcal Atomic # 16 Polarization: 183.32 SS G_CDS: -0.20 Total: 183.12 kcal Total: -143.88 -0.32 -144.21 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397147422.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.942 kcal (2) G-P(sol) polarization free energy of solvation -143.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -144.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds