Wall clock time and date at job start Mon Mar 30 2020 06:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 113.99688 * 2 1 4 4 C 1.53009 * 109.46824 * 179.97438 * 3 2 1 5 5 O 1.42899 * 109.47113 * 64.99778 * 4 3 2 6 6 C 1.42903 * 113.99629 * 180.02562 * 5 4 3 7 7 C 1.53000 * 109.46726 * 180.02562 * 6 5 4 8 8 C 1.53001 * 109.46886 * 180.02562 * 7 6 5 9 9 N 1.46902 * 109.46901 * 180.02562 * 8 7 6 10 10 C 1.46848 * 110.99958 * 294.20187 * 9 8 7 11 11 C 1.53034 * 109.52086 * 174.16220 * 10 9 8 12 12 C 1.53116 * 109.27766 * 59.18490 * 11 10 9 13 13 C 1.50710 * 109.57249 * 182.40496 * 12 11 10 14 14 H 1.08000 * 119.99683 * 119.71591 * 13 12 11 15 15 C 1.37874 * 119.99990 * 299.71110 * 13 12 11 16 16 N 1.31515 * 120.00255 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99780 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47232 * 90.00516 * 17 15 13 19 19 H 1.48500 * 109.47052 * 210.00413 * 17 15 13 20 20 H 1.48501 * 109.47298 * 330.00022 * 17 15 13 21 21 C 1.53110 * 109.16138 * 302.34128 * 12 11 10 22 22 C 1.46852 * 110.99971 * 169.99744 * 9 8 7 23 23 H 1.09001 * 109.46471 * 60.00592 * 1 2 3 24 24 H 1.09000 * 109.47004 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47348 * 300.00790 * 1 2 3 26 26 H 1.09000 * 109.47317 * 59.99739 * 3 2 1 27 27 H 1.09002 * 109.47468 * 299.99096 * 3 2 1 28 28 H 1.09007 * 109.46516 * 304.99711 * 4 3 2 29 29 H 1.09004 * 109.47113 * 185.00179 * 4 3 2 30 30 H 1.09002 * 109.47382 * 59.99956 * 6 5 4 31 31 H 1.09001 * 109.46938 * 299.99942 * 6 5 4 32 32 H 1.09001 * 109.47194 * 299.99575 * 7 6 5 33 33 H 1.08992 * 109.47399 * 59.99748 * 7 6 5 34 34 H 1.09001 * 109.47109 * 299.99380 * 8 7 6 35 35 H 1.09002 * 109.47508 * 59.99571 * 8 7 6 36 36 H 1.09004 * 109.46425 * 294.18123 * 10 9 8 37 37 H 1.09002 * 109.45789 * 54.14490 * 10 9 8 38 38 H 1.08996 * 109.50601 * 299.24170 * 11 10 9 39 39 H 1.09006 * 109.50179 * 179.12409 * 11 10 9 40 40 H 1.08996 * 109.52466 * 62.24942 * 12 11 10 41 41 H 0.96999 * 120.00433 * 179.97438 * 16 15 13 42 42 H 1.09000 * 109.50668 * 297.71376 * 21 12 11 43 43 H 1.08999 * 109.50680 * 177.60089 * 21 12 11 44 44 H 1.08999 * 109.46052 * 305.85601 * 22 9 8 45 45 H 1.09001 * 109.46352 * 65.82479 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 8 3.9659 0.5792 -1.2201 6 6 5.3823 0.4187 -1.3214 7 6 5.7268 -0.2349 -2.6612 8 6 7.2432 -0.4074 -2.7694 9 7 7.5740 -1.0344 -4.0561 10 6 7.0556 -2.4068 -4.1215 11 6 7.2900 -2.9757 -5.5226 12 6 8.7901 -2.9618 -5.8294 13 6 9.0236 -3.4659 -7.2304 14 1 9.4987 -2.8285 -7.9614 15 6 8.6307 -4.7407 -7.5788 16 7 8.0518 -5.5168 -6.6887 17 14 8.9195 -5.3652 -9.3154 18 1 10.2491 -6.0222 -9.3905 19 1 7.8623 -6.3454 -9.6712 20 1 8.8767 -4.2244 -10.2652 21 6 9.3148 -1.5286 -5.7072 22 6 9.0217 -1.0015 -4.3007 23 1 -0.3632 0.5138 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.6885 1.8464 0.8899 27 1 1.6887 1.8464 -0.8901 28 1 3.8507 0.5685 0.8428 29 1 3.9785 2.1766 0.0902 30 1 5.7355 -0.2135 -0.5068 31 1 5.8639 1.3945 -1.2591 32 1 5.2452 -1.2107 -2.7239 33 1 5.3736 0.3976 -3.4755 34 1 7.7252 0.5682 -2.7066 35 1 7.5960 -1.0402 -1.9550 36 1 7.5717 -3.0254 -3.3872 37 1 5.9872 -2.4020 -3.9054 38 1 6.7629 -2.3656 -6.2561 39 1 6.9191 -3.9998 -5.5663 40 1 9.3130 -3.6030 -5.1198 41 1 7.7750 -6.4135 -6.9339 42 1 8.8196 -0.8957 -6.4435 43 1 10.3905 -1.5187 -5.8827 44 1 9.3813 0.0239 -4.2148 45 1 9.5285 -1.6267 -3.5657 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397188226.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:34 Heat of formation + Delta-G solvation = -105.439870 kcal Electronic energy + Delta-G solvation = -20931.276848 eV Core-core repulsion = 17755.377996 eV Total energy + Delta-G solvation = -3175.898853 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -38.76277 -38.26061 -37.34729 -34.48493 -32.48502 -30.89918 -29.74275 -29.63987 -26.59121 -26.04447 -24.05000 -22.79880 -22.30882 -21.64218 -20.38958 -18.53237 -17.17311 -17.00633 -16.32832 -15.86280 -15.70624 -15.58438 -14.98364 -14.49241 -14.39852 -13.84679 -13.60978 -13.28562 -12.87088 -12.69627 -12.46415 -12.30506 -12.03950 -11.81296 -11.56260 -11.40131 -11.17417 -10.98980 -10.86830 -10.69502 -10.55639 -10.36071 -10.14329 -9.96638 -9.90721 -9.69566 -9.34845 -8.89905 -8.62978 -8.23784 -7.69326 -5.91747 -3.96988 3.34997 3.41655 3.43921 3.45383 3.50906 4.48770 4.51840 4.72429 4.88056 4.96937 5.03843 5.06212 5.10864 5.18965 5.27849 5.38156 5.38513 5.42094 5.45636 5.46376 5.62524 5.79457 5.84377 5.95668 6.15538 6.24707 6.30811 6.38112 6.40655 6.69265 6.71830 6.85534 6.91877 7.12058 7.14648 7.23704 7.51183 7.68439 7.76843 7.89731 8.11518 8.22634 8.54326 9.06715 9.67108 11.14459 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.026104 B = 0.002923 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.360220 B = 9578.062909 C =10416.214725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.063 3.937 4 C 0.063 3.937 5 O -0.379 6.379 6 C 0.065 3.935 7 C -0.115 4.115 8 C 0.059 3.941 9 N -0.535 5.535 10 C 0.054 3.946 11 C -0.104 4.104 12 C 0.047 3.953 13 C -0.509 4.509 14 H 0.054 0.946 15 C 0.060 3.940 16 N -0.892 5.892 17 Si 0.890 3.110 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.275 1.275 21 C -0.106 4.106 22 C 0.061 3.939 23 H 0.042 0.958 24 H 0.086 0.914 25 H 0.038 0.962 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.027 0.973 36 H 0.021 0.979 37 H 0.059 0.941 38 H 0.043 0.957 39 H 0.092 0.908 40 H 0.020 0.980 41 H 0.259 0.741 42 H 0.057 0.943 43 H 0.049 0.951 44 H 0.056 0.944 45 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.829 13.737 14.969 22.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.301 6.301 3 C -0.014 4.014 4 C -0.014 4.014 5 O -0.298 6.298 6 C -0.012 4.012 7 C -0.153 4.153 8 C -0.069 4.069 9 N -0.260 5.260 10 C -0.073 4.073 11 C -0.142 4.142 12 C 0.028 3.972 13 C -0.548 4.548 14 H 0.072 0.928 15 C -0.141 4.141 16 N -0.531 5.531 17 Si 0.718 3.282 18 H -0.209 1.209 19 H -0.213 1.213 20 H -0.200 1.200 21 C -0.144 4.144 22 C -0.067 4.067 23 H 0.060 0.940 24 H 0.105 0.895 25 H 0.057 0.943 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.045 0.955 36 H 0.039 0.961 37 H 0.078 0.922 38 H 0.062 0.938 39 H 0.110 0.890 40 H 0.038 0.962 41 H 0.069 0.931 42 H 0.075 0.925 43 H 0.068 0.932 44 H 0.075 0.925 45 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -10.140 13.595 14.461 22.288 hybrid contribution 0.474 -0.530 0.020 0.711 sum -9.666 13.065 14.482 21.768 Atomic orbital electron populations 1.22751 0.81108 1.02944 0.99765 1.87988 1.19561 1.27241 1.95340 1.22568 0.92544 0.85556 1.00736 1.22483 0.93255 0.97457 0.88182 1.87966 1.22476 1.81935 1.37443 1.22486 0.81022 0.99148 0.98512 1.21499 0.95918 1.02118 0.95727 1.21917 0.94805 0.98980 0.91240 1.61965 1.14165 1.20224 1.29692 1.22342 0.98162 0.86561 1.00235 1.21655 0.99862 1.01386 0.91325 1.18689 0.92118 0.89837 0.96509 1.21215 1.38495 0.98512 0.96542 0.92771 1.24974 0.95229 0.96892 0.96988 1.69880 1.41161 1.08474 1.33626 0.86635 0.77725 0.78651 0.85216 1.20850 1.21308 1.19968 1.21677 0.99325 0.99797 0.93628 1.22108 0.86862 0.98989 0.98692 0.93964 0.89516 0.94313 0.92007 0.92347 0.92574 0.91930 0.93534 0.93540 0.90769 0.90364 0.91463 0.95498 0.96063 0.92230 0.93820 0.88998 0.96225 0.93132 0.92472 0.93227 0.92524 0.95897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.38 -4.39 10.67 -40.08 -0.43 -4.82 16 3 C 0.06 0.56 6.32 37.16 0.23 0.79 16 4 C 0.06 0.60 6.32 37.16 0.23 0.84 16 5 O -0.38 -4.98 10.31 -40.08 -0.41 -5.39 16 6 C 0.07 0.77 5.94 37.16 0.22 0.99 16 7 C -0.11 -1.61 5.51 -26.73 -0.15 -1.75 16 8 C 0.06 0.87 4.96 -3.82 -0.02 0.85 16 9 N -0.54 -9.88 4.66 -234.66 -1.09 -10.97 16 10 C 0.05 1.11 5.29 -3.83 -0.02 1.09 16 11 C -0.10 -2.54 5.12 -26.65 -0.14 -2.67 16 12 C 0.05 1.20 2.16 -91.65 -0.20 1.00 16 13 C -0.51 -14.27 8.56 -34.44 -0.29 -14.57 16 14 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 15 C 0.06 1.69 5.31 -17.82 -0.09 1.59 16 16 N -0.89 -25.89 11.37 55.43 0.63 -25.26 16 17 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 21 C -0.11 -2.29 5.32 -26.66 -0.14 -2.44 16 22 C 0.06 1.13 5.46 -3.83 -0.02 1.11 16 23 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 24 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 1.15 6.43 -51.93 -0.33 0.81 16 33 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 34 H 0.07 0.88 7.99 -51.93 -0.41 0.47 16 35 H 0.03 0.39 8.12 -51.93 -0.42 -0.03 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 1.14 6.21 -51.93 -0.32 0.82 16 38 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.09 2.48 6.18 -51.93 -0.32 2.16 16 40 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 42 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 43 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.06 0.91 8.01 -51.93 -0.42 0.50 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 LS Contribution 354.42 15.07 5.34 5.34 Total: -1.00 -30.83 354.42 -8.79 -39.62 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -8.54 Total: -3.35 kcal Atomic # 6 Polarization: -12.54 SS G_CDS: 0.73 Total: -11.81 kcal Atomic # 7 Polarization: -35.77 SS G_CDS: -0.46 Total: -36.23 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: -0.84 Total: -10.21 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.83 -8.79 -39.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397188226.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.816 kcal (2) G-P(sol) polarization free energy of solvation -30.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds