Wall clock time and date at job start Mon Mar 30 2020 06:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 113.99688 * 2 1 4 4 C 1.53009 * 109.46824 * 179.97438 * 3 2 1 5 5 O 1.42899 * 109.47113 * 64.99778 * 4 3 2 6 6 C 1.42903 * 113.99629 * 180.02562 * 5 4 3 7 7 C 1.53000 * 109.46726 * 180.02562 * 6 5 4 8 8 C 1.53001 * 109.46886 * 180.02562 * 7 6 5 9 9 N 1.46902 * 109.46901 * 180.02562 * 8 7 6 10 10 C 1.46848 * 110.99958 * 294.20187 * 9 8 7 11 11 C 1.53034 * 109.52086 * 174.16220 * 10 9 8 12 12 C 1.53116 * 109.27766 * 59.18490 * 11 10 9 13 13 C 1.50710 * 109.57249 * 182.40496 * 12 11 10 14 14 H 1.08000 * 119.99683 * 119.71591 * 13 12 11 15 15 C 1.37874 * 119.99990 * 299.71110 * 13 12 11 16 16 N 1.31515 * 120.00255 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99780 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47232 * 90.00516 * 17 15 13 19 19 H 1.48500 * 109.47052 * 210.00413 * 17 15 13 20 20 H 1.48501 * 109.47298 * 330.00022 * 17 15 13 21 21 C 1.53110 * 109.16138 * 302.34128 * 12 11 10 22 22 C 1.46852 * 110.99971 * 169.99744 * 9 8 7 23 23 H 1.09001 * 109.46471 * 60.00592 * 1 2 3 24 24 H 1.09000 * 109.47004 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47348 * 300.00790 * 1 2 3 26 26 H 1.09000 * 109.47317 * 59.99739 * 3 2 1 27 27 H 1.09002 * 109.47468 * 299.99096 * 3 2 1 28 28 H 1.09007 * 109.46516 * 304.99711 * 4 3 2 29 29 H 1.09004 * 109.47113 * 185.00179 * 4 3 2 30 30 H 1.09002 * 109.47382 * 59.99956 * 6 5 4 31 31 H 1.09001 * 109.46938 * 299.99942 * 6 5 4 32 32 H 1.09001 * 109.47194 * 299.99575 * 7 6 5 33 33 H 1.08992 * 109.47399 * 59.99748 * 7 6 5 34 34 H 1.09001 * 109.47109 * 299.99380 * 8 7 6 35 35 H 1.09002 * 109.47508 * 59.99571 * 8 7 6 36 36 H 1.09004 * 109.46425 * 294.18123 * 10 9 8 37 37 H 1.09002 * 109.45789 * 54.14490 * 10 9 8 38 38 H 1.08996 * 109.50601 * 299.24170 * 11 10 9 39 39 H 1.09006 * 109.50179 * 179.12409 * 11 10 9 40 40 H 1.08996 * 109.52466 * 62.24942 * 12 11 10 41 41 H 0.96999 * 120.00433 * 179.97438 * 16 15 13 42 42 H 1.09000 * 109.50668 * 297.71376 * 21 12 11 43 43 H 1.08999 * 109.50680 * 177.60089 * 21 12 11 44 44 H 1.08999 * 109.46052 * 305.85601 * 22 9 8 45 45 H 1.09001 * 109.46352 * 65.82479 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 8 3.9659 0.5792 -1.2201 6 6 5.3823 0.4187 -1.3214 7 6 5.7268 -0.2349 -2.6612 8 6 7.2432 -0.4074 -2.7694 9 7 7.5740 -1.0344 -4.0561 10 6 7.0556 -2.4068 -4.1215 11 6 7.2900 -2.9757 -5.5226 12 6 8.7901 -2.9618 -5.8294 13 6 9.0236 -3.4659 -7.2304 14 1 9.4987 -2.8285 -7.9614 15 6 8.6307 -4.7407 -7.5788 16 7 8.0518 -5.5168 -6.6887 17 14 8.9195 -5.3652 -9.3154 18 1 10.2491 -6.0222 -9.3905 19 1 7.8623 -6.3454 -9.6712 20 1 8.8767 -4.2244 -10.2652 21 6 9.3148 -1.5286 -5.7072 22 6 9.0217 -1.0015 -4.3007 23 1 -0.3632 0.5138 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.6885 1.8464 0.8899 27 1 1.6887 1.8464 -0.8901 28 1 3.8507 0.5685 0.8428 29 1 3.9785 2.1766 0.0902 30 1 5.7355 -0.2135 -0.5068 31 1 5.8639 1.3945 -1.2591 32 1 5.2452 -1.2107 -2.7239 33 1 5.3736 0.3976 -3.4755 34 1 7.7252 0.5682 -2.7066 35 1 7.5960 -1.0402 -1.9550 36 1 7.5717 -3.0254 -3.3872 37 1 5.9872 -2.4020 -3.9054 38 1 6.7629 -2.3656 -6.2561 39 1 6.9191 -3.9998 -5.5663 40 1 9.3130 -3.6030 -5.1198 41 1 7.7750 -6.4135 -6.9339 42 1 8.8196 -0.8957 -6.4435 43 1 10.3905 -1.5187 -5.8827 44 1 9.3813 0.0239 -4.2148 45 1 9.5285 -1.6267 -3.5657 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397188226.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:34 Heat of formation + Delta-G solvation = -125.767536 kcal Electronic energy + Delta-G solvation = -20932.158322 eV Core-core repulsion = 17755.377996 eV Total energy + Delta-G solvation = -3176.780326 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.98775 -39.36565 -38.20800 -36.14462 -34.13642 -32.26062 -31.46690 -30.68856 -27.88719 -27.12607 -25.50914 -23.95984 -23.48487 -23.26414 -21.68814 -20.35243 -18.44884 -17.95289 -17.76302 -16.94785 -16.76123 -16.43735 -16.31614 -15.95152 -15.77143 -15.18428 -14.91259 -14.61749 -14.40787 -14.27219 -13.99893 -13.37923 -13.16217 -13.08036 -12.85865 -12.69294 -12.57112 -12.48657 -12.20882 -12.01409 -11.96102 -11.91447 -11.84983 -11.72511 -11.28019 -10.78959 -10.64451 -10.62734 -10.51767 -10.36702 -9.17488 -8.07164 -6.20764 1.41012 1.42002 1.52442 2.44333 2.58722 2.88390 3.17503 3.20532 3.96291 4.05519 4.17096 4.19438 4.25580 4.32808 4.37260 4.38206 4.46479 4.49267 4.53204 4.56449 4.58117 4.62431 4.66419 4.75292 4.78433 4.80172 4.86194 4.90384 4.97860 5.07581 5.22070 5.23327 5.31605 5.37039 5.57708 5.63669 6.00917 6.03703 6.19514 6.29498 6.33475 6.39461 6.41691 6.91155 7.46958 8.97503 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.026104 B = 0.002923 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.360220 B = 9578.062909 C =10416.214725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.419 6.419 3 C 0.058 3.942 4 C 0.056 3.944 5 O -0.410 6.410 6 C 0.070 3.930 7 C -0.109 4.109 8 C 0.062 3.938 9 N -0.545 5.545 10 C 0.068 3.932 11 C -0.095 4.095 12 C 0.043 3.957 13 C -0.533 4.533 14 H 0.052 0.948 15 C 0.010 3.990 16 N -0.919 5.919 17 Si 0.954 3.046 18 H -0.275 1.275 19 H -0.284 1.284 20 H -0.269 1.269 21 C -0.100 4.100 22 C 0.066 3.934 23 H 0.045 0.955 24 H 0.088 0.912 25 H 0.058 0.942 26 H 0.091 0.909 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.090 0.910 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.051 0.949 33 H 0.068 0.932 34 H 0.095 0.905 35 H 0.033 0.967 36 H 0.013 0.987 37 H 0.070 0.930 38 H 0.029 0.971 39 H 0.059 0.941 40 H -0.013 1.013 41 H 0.260 0.740 42 H 0.051 0.949 43 H 0.055 0.945 44 H 0.092 0.908 45 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.746 15.702 15.826 24.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.339 6.339 3 C -0.019 4.019 4 C -0.020 4.020 5 O -0.330 6.330 6 C -0.007 4.007 7 C -0.147 4.147 8 C -0.065 4.065 9 N -0.270 5.270 10 C -0.060 4.060 11 C -0.134 4.134 12 C 0.024 3.976 13 C -0.571 4.571 14 H 0.070 0.930 15 C -0.189 4.189 16 N -0.559 5.559 17 Si 0.780 3.220 18 H -0.201 1.201 19 H -0.209 1.209 20 H -0.193 1.193 21 C -0.138 4.138 22 C -0.061 4.061 23 H 0.064 0.936 24 H 0.107 0.893 25 H 0.077 0.923 26 H 0.109 0.891 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.108 0.892 30 H 0.071 0.929 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.113 0.887 35 H 0.051 0.949 36 H 0.031 0.969 37 H 0.088 0.912 38 H 0.048 0.952 39 H 0.078 0.922 40 H 0.005 0.995 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.074 0.926 44 H 0.110 0.890 45 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -10.057 15.579 15.330 24.060 hybrid contribution 0.417 -1.126 -0.221 1.221 sum -9.640 14.453 15.109 23.024 Atomic orbital electron populations 1.22899 0.79668 1.03548 1.00916 1.87932 1.21387 1.28957 1.95609 1.22757 0.92169 0.84892 1.02035 1.22748 0.93835 0.98607 0.86814 1.87922 1.23061 1.82665 1.39327 1.22425 0.80957 1.00264 0.97032 1.21405 0.95280 1.00981 0.97080 1.21991 0.95386 0.99897 0.89260 1.61908 1.14122 1.18494 1.32431 1.22060 0.98912 0.87870 0.97179 1.21419 0.98857 0.99507 0.93587 1.18674 0.92554 0.91810 0.94561 1.21599 1.38682 0.99011 0.97778 0.92996 1.25777 0.94970 0.97163 1.00948 1.70025 1.41717 1.08670 1.35455 0.85611 0.77783 0.78121 0.80470 1.20098 1.20935 1.19314 1.21550 0.99404 0.96991 0.95888 1.22061 0.86992 1.00775 0.96293 0.93595 0.89324 0.92319 0.89092 0.92524 0.92486 0.89234 0.92896 0.91138 0.92998 0.91323 0.88719 0.94857 0.96889 0.91207 0.95211 0.92250 0.99464 0.93122 0.93042 0.92619 0.88954 0.96008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 113.37 1.25 1.62 16 2 O -0.42 -9.29 10.67 -144.34 -1.54 -10.83 16 3 C 0.06 0.93 6.32 71.99 0.45 1.38 16 4 C 0.06 0.96 6.32 71.99 0.45 1.41 16 5 O -0.41 -10.19 10.31 -144.34 -1.49 -11.68 16 6 C 0.07 1.49 5.94 71.98 0.43 1.92 16 7 C -0.11 -2.90 5.51 30.59 0.17 -2.73 16 8 C 0.06 1.67 4.96 86.30 0.43 2.10 16 9 N -0.54 -19.29 4.66 -896.34 -4.17 -23.47 16 10 C 0.07 2.78 5.29 86.32 0.46 3.24 16 11 C -0.10 -4.80 5.12 30.64 0.16 -4.64 16 12 C 0.04 2.23 2.16 -11.46 -0.02 2.20 16 13 C -0.53 -30.47 8.56 25.60 0.22 -30.25 16 14 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 15 C 0.01 0.55 5.31 84.65 0.45 1.00 16 16 N -0.92 -54.82 11.37 21.45 0.24 -54.57 16 17 Si 0.95 44.91 29.54 68.60 2.03 46.94 16 18 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 19 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 20 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 21 C -0.10 -4.29 5.32 30.64 0.16 -4.13 16 22 C 0.07 2.32 5.46 86.32 0.47 2.79 16 23 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 24 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 29 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 30 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.07 1.16 8.14 -2.39 -0.02 1.15 16 32 H 0.05 1.59 6.43 -2.39 -0.02 1.57 16 33 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.09 2.08 7.99 -2.39 -0.02 2.06 16 35 H 0.03 0.88 8.12 -2.39 -0.02 0.86 16 36 H 0.01 0.55 8.14 -2.38 -0.02 0.53 16 37 H 0.07 2.71 6.21 -2.39 -0.01 2.70 16 38 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.06 3.35 6.18 -2.38 -0.01 3.34 16 40 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 41 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 42 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 43 H 0.06 2.26 8.14 -2.39 -0.02 2.25 16 44 H 0.09 2.63 8.01 -2.39 -0.02 2.61 16 45 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -67.98 354.42 1.06 -66.92 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: 0.91 Total: 10.77 kcal Atomic # 6 Polarization: -29.15 SS G_CDS: 5.07 Total: -24.08 kcal Atomic # 7 Polarization: -74.11 SS G_CDS: -3.93 Total: -78.04 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -3.03 Total: -22.51 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -67.98 1.06 -66.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397188226.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.844 kcal (2) G-P(sol) polarization free energy of solvation -67.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds