Wall clock time and date at job start Mon Mar 30 2020 06:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 113.99765 * 2 1 4 4 C 1.52997 * 109.47134 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47331 * 180.02562 * 4 3 2 6 6 O 1.42898 * 109.47183 * 180.02562 * 5 4 3 7 7 C 1.42903 * 114.00047 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.47362 * 180.02562 * 7 6 5 9 9 N 1.46905 * 109.47172 * 65.01886 * 8 7 6 10 10 C 1.46844 * 110.99913 * 200.01588 * 9 8 7 11 11 C 1.53037 * 109.52235 * 174.16373 * 10 9 8 12 12 C 1.53114 * 109.28088 * 59.17742 * 11 10 9 13 13 C 1.50694 * 109.57806 * 182.41172 * 12 11 10 14 14 H 1.08005 * 120.00317 * 119.71478 * 13 12 11 15 15 C 1.37883 * 119.99745 * 299.71630 * 13 12 11 16 16 N 1.31508 * 119.99921 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99828 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.46951 * 89.99885 * 17 15 13 19 19 H 1.48502 * 109.46705 * 209.99772 * 17 15 13 20 20 H 1.48495 * 109.47144 * 330.00042 * 17 15 13 21 21 C 1.53126 * 109.16153 * 302.34790 * 12 11 10 22 22 C 1.46849 * 110.99664 * 75.80542 * 9 8 7 23 23 H 1.09001 * 109.46749 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47196 * 299.99325 * 1 2 3 25 25 H 1.09003 * 109.47134 * 59.99741 * 1 2 3 26 26 H 1.09003 * 109.47175 * 60.00290 * 3 2 1 27 27 H 1.09000 * 109.47407 * 300.00272 * 3 2 1 28 28 H 1.08999 * 109.47574 * 60.00170 * 4 3 2 29 29 H 1.09000 * 109.47177 * 300.00390 * 4 3 2 30 30 H 1.08994 * 109.47255 * 59.99814 * 5 4 3 31 31 H 1.09000 * 109.46923 * 300.00074 * 5 4 3 32 32 H 1.09001 * 109.47158 * 59.99546 * 7 6 5 33 33 H 1.09004 * 109.47020 * 299.99831 * 7 6 5 34 34 H 1.08995 * 109.47279 * 185.01922 * 8 7 6 35 35 H 1.09004 * 109.46954 * 305.02200 * 8 7 6 36 36 H 1.09001 * 109.46077 * 294.18012 * 10 9 8 37 37 H 1.08998 * 109.46144 * 54.14762 * 10 9 8 38 38 H 1.09006 * 109.50047 * 299.23638 * 11 10 9 39 39 H 1.08993 * 109.50440 * 179.12232 * 11 10 9 40 40 H 1.08999 * 109.52238 * 62.25027 * 12 11 10 41 41 H 0.96999 * 119.99774 * 179.97438 * 16 15 13 42 42 H 1.08995 * 109.50214 * 297.71013 * 21 12 11 43 43 H 1.09002 * 109.50549 * 177.59308 * 21 12 11 44 44 H 1.08995 * 109.46376 * 305.85541 * 22 9 8 45 45 H 1.08996 * 109.46418 * 65.83392 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 4.1577 2.5825 0.0000 6 8 5.5822 2.4697 -0.0012 7 6 6.2647 3.7252 -0.0013 8 6 7.7756 3.4844 -0.0033 9 7 8.1656 2.8305 -1.2596 10 6 9.4670 2.1638 -1.1239 11 6 9.7727 1.3745 -2.3989 12 6 9.7907 2.3316 -3.5939 13 6 10.0325 1.5527 -4.8610 14 1 9.2976 1.5669 -5.6523 15 6 11.1922 0.8219 -5.0103 16 7 12.0873 0.8050 -4.0470 17 14 11.4917 -0.1442 -6.5808 18 1 12.2010 0.7149 -7.5627 19 1 12.3214 -1.3378 -6.2770 20 1 10.1909 -0.5776 -7.1510 21 6 8.4407 3.0487 -3.6838 22 6 8.1737 3.7895 -2.3716 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.6886 1.8464 0.8900 27 1 1.6885 1.8465 -0.8899 28 1 3.8567 0.6441 -0.8908 29 1 3.8574 0.6437 0.8891 30 1 3.8364 3.1229 0.8904 31 1 3.8357 3.1239 -0.8895 32 1 5.9874 4.2896 0.8891 33 1 5.9860 4.2901 -0.8909 34 1 8.2956 4.4381 0.0866 35 1 8.0426 2.8443 0.8377 36 1 10.2435 2.9120 -0.9649 37 1 9.4392 1.4829 -0.2731 38 1 9.0038 0.6169 -2.5510 39 1 10.7456 0.8925 -2.3040 40 1 10.5850 3.0660 -3.4604 41 1 12.9029 0.2905 -4.1519 42 1 7.6510 2.3175 -3.8562 43 1 8.4621 3.7629 -4.5070 44 1 7.2067 4.2894 -2.4271 45 1 8.9564 4.5300 -2.2070 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397190339.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:36 Heat of formation + Delta-G solvation = -104.792946 kcal Electronic energy + Delta-G solvation = -21187.629292 eV Core-core repulsion = 18011.758492 eV Total energy + Delta-G solvation = -3175.870800 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -38.66853 -38.19951 -37.33517 -34.10616 -32.82092 -31.39958 -29.83075 -28.55981 -27.13935 -25.38681 -24.68746 -22.71474 -21.81375 -21.65002 -20.69147 -18.51174 -16.99919 -16.71362 -16.35095 -16.23208 -15.82908 -15.07333 -14.89302 -14.52862 -14.39555 -13.96959 -13.56443 -13.26308 -12.87058 -12.56848 -12.32660 -12.20131 -12.09080 -11.72893 -11.57001 -11.32746 -11.24053 -11.11526 -10.88393 -10.79836 -10.60496 -10.34973 -10.12118 -9.94068 -9.87266 -9.46358 -9.35664 -8.86563 -8.63342 -8.22620 -7.61702 -5.90938 -3.95834 3.24321 3.35699 3.42297 3.46410 4.04860 4.46594 4.51410 4.74773 4.87320 5.03137 5.03491 5.09872 5.17548 5.20050 5.33031 5.35621 5.37593 5.39224 5.44861 5.50794 5.73017 5.81495 5.96151 5.96866 6.03459 6.08923 6.18286 6.29658 6.41330 6.69286 6.70642 6.88380 6.93643 7.15859 7.26539 7.34334 7.53933 7.70835 7.81054 7.91764 8.13639 8.24031 8.55829 9.07781 9.68129 11.15333 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.018420 B = 0.003455 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.761331 B = 8102.522707 C = 9121.553288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.390 6.390 3 C 0.066 3.934 4 C -0.119 4.119 5 C 0.067 3.933 6 O -0.365 6.365 7 C 0.072 3.928 8 C 0.053 3.947 9 N -0.526 5.526 10 C 0.059 3.941 11 C -0.104 4.104 12 C 0.048 3.952 13 C -0.508 4.508 14 H 0.054 0.946 15 C 0.060 3.940 16 N -0.893 5.893 17 Si 0.889 3.111 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.274 1.274 21 C -0.105 4.105 22 C 0.059 3.941 23 H 0.086 0.914 24 H 0.040 0.960 25 H 0.041 0.959 26 H 0.048 0.952 27 H 0.050 0.950 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.042 0.958 31 H 0.046 0.954 32 H 0.044 0.956 33 H 0.048 0.952 34 H 0.044 0.956 35 H 0.076 0.924 36 H 0.020 0.980 37 H 0.055 0.945 38 H 0.044 0.956 39 H 0.091 0.909 40 H 0.019 0.981 41 H 0.258 0.742 42 H 0.057 0.943 43 H 0.047 0.953 44 H 0.054 0.946 45 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.833 5.207 10.704 21.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.309 6.309 3 C -0.011 4.011 4 C -0.157 4.157 5 C -0.011 4.011 6 O -0.283 6.283 7 C -0.005 4.005 8 C -0.075 4.075 9 N -0.252 5.252 10 C -0.068 4.068 11 C -0.142 4.142 12 C 0.029 3.971 13 C -0.547 4.547 14 H 0.072 0.928 15 C -0.141 4.141 16 N -0.532 5.532 17 Si 0.718 3.282 18 H -0.209 1.209 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.143 4.143 22 C -0.068 4.068 23 H 0.104 0.896 24 H 0.058 0.942 25 H 0.060 0.940 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.102 0.898 29 H 0.097 0.903 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.095 0.905 36 H 0.038 0.962 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.110 0.890 40 H 0.037 0.963 41 H 0.068 0.932 42 H 0.075 0.925 43 H 0.066 0.934 44 H 0.073 0.927 45 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -17.789 4.422 10.637 21.193 hybrid contribution 0.437 0.647 -0.616 0.995 sum -17.352 5.069 10.021 20.669 Atomic orbital electron populations 1.22743 0.81008 1.02826 0.99901 1.87896 1.19678 1.27897 1.95403 1.22383 0.93841 0.84728 1.00145 1.21350 0.92136 0.97148 1.05025 1.22213 0.82708 0.96518 0.99620 1.88027 1.16277 1.28865 1.95161 1.22527 0.93016 0.85776 0.99163 1.22091 0.93077 0.98056 0.94300 1.61928 1.30929 1.29730 1.02567 1.22272 0.87259 0.96734 1.00518 1.21649 1.02238 0.98276 0.92028 1.18680 0.90691 0.93728 0.93966 1.21217 1.03462 1.28664 1.01323 0.92803 1.24971 0.96128 0.96665 0.96307 1.69879 1.09240 1.42007 1.32083 0.86637 0.78140 0.79638 0.83832 1.20876 1.21311 1.19942 1.21661 1.00852 0.98577 0.93229 1.22162 0.98496 0.93306 0.92870 0.89561 0.94156 0.94037 0.93341 0.93131 0.89801 0.90328 0.93939 0.93529 0.93822 0.93395 0.93826 0.90532 0.96203 0.92604 0.93725 0.89040 0.96279 0.93162 0.92456 0.93391 0.92740 0.96030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.35 16 2 O -0.39 -4.33 10.70 -35.23 -0.38 -4.70 16 3 C 0.07 0.62 5.94 37.16 0.22 0.84 16 4 C -0.12 -1.34 5.95 -26.73 -0.16 -1.50 16 5 C 0.07 0.75 5.94 37.16 0.22 0.97 16 6 O -0.36 -5.43 10.29 -35.23 -0.36 -5.79 16 7 C 0.07 0.95 6.13 37.16 0.23 1.17 16 8 C 0.05 0.79 5.39 -3.82 -0.02 0.77 16 9 N -0.53 -9.86 4.53 -234.67 -1.06 -10.92 16 10 C 0.06 1.22 5.43 -3.84 -0.02 1.20 16 11 C -0.10 -2.54 5.12 -26.65 -0.14 -2.68 16 12 C 0.05 1.23 2.16 -91.65 -0.20 1.03 16 13 C -0.51 -14.31 8.56 -34.44 -0.29 -14.61 16 14 H 0.05 1.50 7.74 -52.48 -0.41 1.10 16 15 C 0.06 1.69 5.31 -17.82 -0.09 1.60 16 16 N -0.89 -25.93 11.37 55.43 0.63 -25.30 16 17 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 21 C -0.11 -2.30 5.32 -26.65 -0.14 -2.44 16 22 C 0.06 1.10 5.29 -3.83 -0.02 1.08 16 23 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 25 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.05 0.62 6.70 -51.93 -0.35 0.27 16 34 H 0.04 0.59 8.00 -51.93 -0.42 0.18 16 35 H 0.08 1.12 7.79 -51.93 -0.40 0.71 16 36 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 1.07 7.93 -51.93 -0.41 0.66 16 38 H 0.04 1.14 8.14 -51.93 -0.42 0.71 16 39 H 0.09 2.47 6.18 -51.93 -0.32 2.15 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 42 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 43 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.05 0.89 6.65 -51.93 -0.35 0.55 16 45 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 354.88 15.07 5.35 5.35 Total: -1.00 -30.74 354.88 -8.70 -39.44 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -8.55 Total: -3.57 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: 0.70 Total: -11.22 kcal Atomic # 7 Polarization: -35.79 SS G_CDS: -0.43 Total: -36.22 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: -0.74 Total: -10.49 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.74 -8.70 -39.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397190339.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.355 kcal (2) G-P(sol) polarization free energy of solvation -30.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds