Wall clock time and date at job start Mon Mar 30 2020 06:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 113.99765 * 2 1 4 4 C 1.52997 * 109.47134 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47331 * 180.02562 * 4 3 2 6 6 O 1.42898 * 109.47183 * 180.02562 * 5 4 3 7 7 C 1.42903 * 114.00047 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.47362 * 180.02562 * 7 6 5 9 9 N 1.46905 * 109.47172 * 65.01886 * 8 7 6 10 10 C 1.46844 * 110.99913 * 200.01588 * 9 8 7 11 11 C 1.53037 * 109.52235 * 174.16373 * 10 9 8 12 12 C 1.53114 * 109.28088 * 59.17742 * 11 10 9 13 13 C 1.50694 * 109.57806 * 182.41172 * 12 11 10 14 14 H 1.08005 * 120.00317 * 119.71478 * 13 12 11 15 15 C 1.37883 * 119.99745 * 299.71630 * 13 12 11 16 16 N 1.31508 * 119.99921 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99828 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.46951 * 89.99885 * 17 15 13 19 19 H 1.48502 * 109.46705 * 209.99772 * 17 15 13 20 20 H 1.48495 * 109.47144 * 330.00042 * 17 15 13 21 21 C 1.53126 * 109.16153 * 302.34790 * 12 11 10 22 22 C 1.46849 * 110.99664 * 75.80542 * 9 8 7 23 23 H 1.09001 * 109.46749 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47196 * 299.99325 * 1 2 3 25 25 H 1.09003 * 109.47134 * 59.99741 * 1 2 3 26 26 H 1.09003 * 109.47175 * 60.00290 * 3 2 1 27 27 H 1.09000 * 109.47407 * 300.00272 * 3 2 1 28 28 H 1.08999 * 109.47574 * 60.00170 * 4 3 2 29 29 H 1.09000 * 109.47177 * 300.00390 * 4 3 2 30 30 H 1.08994 * 109.47255 * 59.99814 * 5 4 3 31 31 H 1.09000 * 109.46923 * 300.00074 * 5 4 3 32 32 H 1.09001 * 109.47158 * 59.99546 * 7 6 5 33 33 H 1.09004 * 109.47020 * 299.99831 * 7 6 5 34 34 H 1.08995 * 109.47279 * 185.01922 * 8 7 6 35 35 H 1.09004 * 109.46954 * 305.02200 * 8 7 6 36 36 H 1.09001 * 109.46077 * 294.18012 * 10 9 8 37 37 H 1.08998 * 109.46144 * 54.14762 * 10 9 8 38 38 H 1.09006 * 109.50047 * 299.23638 * 11 10 9 39 39 H 1.08993 * 109.50440 * 179.12232 * 11 10 9 40 40 H 1.08999 * 109.52238 * 62.25027 * 12 11 10 41 41 H 0.96999 * 119.99774 * 179.97438 * 16 15 13 42 42 H 1.08995 * 109.50214 * 297.71013 * 21 12 11 43 43 H 1.09002 * 109.50549 * 177.59308 * 21 12 11 44 44 H 1.08995 * 109.46376 * 305.85541 * 22 9 8 45 45 H 1.08996 * 109.46418 * 65.83392 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 4.1577 2.5825 0.0000 6 8 5.5822 2.4697 -0.0012 7 6 6.2647 3.7252 -0.0013 8 6 7.7756 3.4844 -0.0033 9 7 8.1656 2.8305 -1.2596 10 6 9.4670 2.1638 -1.1239 11 6 9.7727 1.3745 -2.3989 12 6 9.7907 2.3316 -3.5939 13 6 10.0325 1.5527 -4.8610 14 1 9.2976 1.5669 -5.6523 15 6 11.1922 0.8219 -5.0103 16 7 12.0873 0.8050 -4.0470 17 14 11.4917 -0.1442 -6.5808 18 1 12.2010 0.7149 -7.5627 19 1 12.3214 -1.3378 -6.2770 20 1 10.1909 -0.5776 -7.1510 21 6 8.4407 3.0487 -3.6838 22 6 8.1737 3.7895 -2.3716 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.6886 1.8464 0.8900 27 1 1.6885 1.8465 -0.8899 28 1 3.8567 0.6441 -0.8908 29 1 3.8574 0.6437 0.8891 30 1 3.8364 3.1229 0.8904 31 1 3.8357 3.1239 -0.8895 32 1 5.9874 4.2896 0.8891 33 1 5.9860 4.2901 -0.8909 34 1 8.2956 4.4381 0.0866 35 1 8.0426 2.8443 0.8377 36 1 10.2435 2.9120 -0.9649 37 1 9.4392 1.4829 -0.2731 38 1 9.0038 0.6169 -2.5510 39 1 10.7456 0.8925 -2.3040 40 1 10.5850 3.0660 -3.4604 41 1 12.9029 0.2905 -4.1519 42 1 7.6510 2.3175 -3.8562 43 1 8.4621 3.7629 -4.5070 44 1 7.2067 4.2894 -2.4271 45 1 8.9564 4.5300 -2.2070 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397190339.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:35 Heat of formation + Delta-G solvation = -125.090985 kcal Electronic energy + Delta-G solvation = -21188.509481 eV Core-core repulsion = 18011.758492 eV Total energy + Delta-G solvation = -3176.750989 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.00134 -39.12435 -38.42277 -35.83818 -33.96721 -33.09581 -31.52091 -29.95134 -27.88739 -27.14256 -25.53199 -24.27658 -23.52347 -22.60449 -22.02640 -20.34058 -18.45553 -17.86869 -17.53635 -17.12535 -16.89856 -16.56147 -15.98498 -15.78628 -15.74667 -15.28212 -14.84682 -14.66242 -14.50625 -14.18207 -13.93424 -13.37014 -13.16333 -12.98199 -12.81855 -12.69171 -12.61086 -12.44967 -12.22818 -12.17511 -11.96202 -11.90696 -11.83659 -11.64171 -11.35319 -10.76123 -10.65464 -10.62284 -10.39274 -10.36159 -9.07759 -8.07246 -6.20466 1.40596 1.41825 1.52273 2.44352 2.47768 3.06605 3.19499 3.25417 3.96193 4.06736 4.16670 4.20113 4.24970 4.30254 4.39887 4.43748 4.47677 4.49013 4.55790 4.57229 4.57876 4.60570 4.64153 4.73632 4.78151 4.86561 4.91505 4.95249 4.99069 5.12597 5.14166 5.18600 5.25492 5.36258 5.58068 5.64060 6.01660 6.04918 6.22804 6.32949 6.34595 6.42253 6.52910 6.90966 7.46963 8.97446 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.018420 B = 0.003455 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.761331 B = 8102.522707 C = 9121.553288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.422 6.422 3 C 0.068 3.932 4 C -0.117 4.117 5 C 0.066 3.934 6 O -0.399 6.399 7 C 0.074 3.926 8 C 0.051 3.949 9 N -0.540 5.540 10 C 0.071 3.929 11 C -0.095 4.095 12 C 0.045 3.955 13 C -0.533 4.533 14 H 0.049 0.951 15 C 0.011 3.989 16 N -0.918 5.918 17 Si 0.954 3.046 18 H -0.275 1.275 19 H -0.283 1.283 20 H -0.270 1.270 21 C -0.099 4.099 22 C 0.067 3.933 23 H 0.093 0.907 24 H 0.055 0.945 25 H 0.050 0.950 26 H 0.069 0.931 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.077 0.923 33 H 0.051 0.949 34 H 0.063 0.937 35 H 0.077 0.923 36 H 0.018 0.982 37 H 0.068 0.932 38 H 0.025 0.975 39 H 0.061 0.939 40 H -0.010 1.010 41 H 0.260 0.740 42 H 0.045 0.955 43 H 0.053 0.947 44 H 0.085 0.915 45 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.578 6.389 11.332 23.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.342 6.342 3 C -0.008 4.008 4 C -0.155 4.155 5 C -0.010 4.010 6 O -0.319 6.319 7 C -0.003 4.003 8 C -0.077 4.077 9 N -0.265 5.265 10 C -0.057 4.057 11 C -0.133 4.133 12 C 0.026 3.974 13 C -0.571 4.571 14 H 0.067 0.933 15 C -0.187 4.187 16 N -0.558 5.558 17 Si 0.779 3.221 18 H -0.200 1.200 19 H -0.208 1.208 20 H -0.195 1.195 21 C -0.137 4.137 22 C -0.061 4.061 23 H 0.112 0.888 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.087 0.913 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.036 0.964 37 H 0.086 0.914 38 H 0.044 0.956 39 H 0.079 0.921 40 H 0.008 0.992 41 H 0.069 0.931 42 H 0.064 0.936 43 H 0.072 0.928 44 H 0.103 0.897 45 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -19.556 5.619 11.272 23.260 hybrid contribution 0.954 0.268 -0.793 1.269 sum -18.602 5.886 10.478 22.147 Atomic orbital electron populations 1.22934 0.79235 1.03805 1.01065 1.87848 1.21750 1.28970 1.95661 1.22396 0.92299 0.84508 1.01615 1.21322 0.93819 0.97181 1.03163 1.22334 0.81044 0.96453 1.01189 1.87982 1.18229 1.30195 1.95467 1.22571 0.91351 0.85473 1.00886 1.22229 0.94824 0.98559 0.92054 1.61865 1.29306 1.30744 1.04582 1.22013 0.88572 0.96651 0.98427 1.21409 0.99845 0.98002 0.94055 1.18653 0.91899 0.93290 0.93557 1.21588 1.03734 1.29443 1.02358 0.93250 1.25757 0.95924 0.97601 0.99462 1.70015 1.09524 1.42522 1.33719 0.85624 0.78112 0.78279 0.80057 1.20025 1.20846 1.19463 1.21525 0.97991 0.98387 0.95766 1.22073 1.00163 0.92798 0.91043 0.88829 0.92679 0.93120 0.91267 0.92102 0.92476 0.91374 0.91346 0.92738 0.90542 0.93061 0.91948 0.90407 0.96427 0.91399 0.95641 0.92099 0.99225 0.93086 0.93610 0.92816 0.89696 0.95782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 113.37 1.25 1.58 16 2 O -0.42 -8.98 10.70 -148.98 -1.59 -10.57 16 3 C 0.07 1.18 5.94 71.98 0.43 1.60 16 4 C -0.12 -2.56 5.95 30.59 0.18 -2.38 16 5 C 0.07 1.34 5.94 71.98 0.43 1.77 16 6 O -0.40 -11.07 10.29 -148.98 -1.53 -12.61 16 7 C 0.07 1.69 6.13 71.98 0.44 2.13 16 8 C 0.05 1.38 5.39 86.30 0.47 1.85 16 9 N -0.54 -19.48 4.53 -896.37 -4.06 -23.55 16 10 C 0.07 2.91 5.43 86.33 0.47 3.38 16 11 C -0.09 -4.80 5.12 30.64 0.16 -4.64 16 12 C 0.04 2.35 2.16 -11.46 -0.02 2.32 16 13 C -0.53 -30.76 8.56 25.60 0.22 -30.54 16 14 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 15 C 0.01 0.62 5.31 84.66 0.45 1.07 16 16 N -0.92 -54.67 11.37 21.45 0.24 -54.43 16 17 Si 0.95 45.12 29.54 68.60 2.03 47.15 16 18 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 19 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 20 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 21 C -0.10 -4.31 5.32 30.65 0.16 -4.15 16 22 C 0.07 2.38 5.29 86.33 0.46 2.83 16 23 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 25 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.05 1.13 6.70 -2.39 -0.02 1.12 16 34 H 0.06 1.48 8.00 -2.39 -0.02 1.46 16 35 H 0.08 2.10 7.79 -2.38 -0.02 2.08 16 36 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.07 2.59 7.93 -2.39 -0.02 2.57 16 38 H 0.02 1.33 8.14 -2.38 -0.02 1.31 16 39 H 0.06 3.43 6.18 -2.39 -0.01 3.42 16 40 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 41 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 42 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 44 H 0.08 2.53 6.65 -2.39 -0.02 2.52 16 45 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -67.74 354.88 1.07 -66.67 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: 0.91 Total: 10.51 kcal Atomic # 6 Polarization: -28.25 SS G_CDS: 5.08 Total: -23.17 kcal Atomic # 7 Polarization: -74.16 SS G_CDS: -3.82 Total: -77.98 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: -3.13 Total: -23.18 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -67.74 1.07 -66.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397190339.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.420 kcal (2) G-P(sol) polarization free energy of solvation -67.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds