Wall clock time and date at job start Mon Mar 30 2020 06:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 113.99734 * 2 1 4 4 C 1.53003 * 109.47204 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47106 * 180.02562 * 4 3 2 6 6 O 1.42901 * 109.47084 * 180.02562 * 5 4 3 7 7 C 1.42895 * 113.99948 * 179.97438 * 6 5 4 8 8 C 1.53006 * 109.47036 * 179.97438 * 7 6 5 9 9 N 1.46904 * 109.46673 * 65.00189 * 8 7 6 10 10 C 1.46845 * 110.99822 * 66.04689 * 9 8 7 11 11 C 1.53041 * 109.52091 * 174.15602 * 10 9 8 12 12 C 1.53118 * 109.27869 * 59.18074 * 11 10 9 13 13 C 1.53120 * 109.16081 * 302.34571 * 12 11 10 14 14 H 1.08999 * 109.50504 * 297.71406 * 13 12 11 15 15 C 1.50698 * 109.50388 * 177.63506 * 13 12 11 16 16 H 1.08005 * 119.99868 * 239.99711 * 15 13 12 17 17 C 1.37871 * 120.00408 * 59.99818 * 15 13 12 18 18 N 1.31522 * 119.99572 * 359.97438 * 17 15 13 19 19 Si 1.86795 * 120.00331 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47334 * 89.99961 * 19 17 15 21 21 H 1.48506 * 109.47011 * 209.99994 * 19 17 15 22 22 H 1.48501 * 109.47260 * 329.99772 * 19 17 15 23 23 C 1.46842 * 111.00416 * 301.83447 * 9 8 7 24 24 H 1.09008 * 109.46707 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47491 * 299.99676 * 1 2 3 26 26 H 1.08996 * 109.47296 * 60.00226 * 1 2 3 27 27 H 1.09004 * 109.46814 * 60.00015 * 3 2 1 28 28 H 1.09003 * 109.47291 * 300.00160 * 3 2 1 29 29 H 1.09000 * 109.46622 * 59.99799 * 4 3 2 30 30 H 1.08999 * 109.46719 * 300.00262 * 4 3 2 31 31 H 1.08995 * 109.46983 * 59.99821 * 5 4 3 32 32 H 1.09003 * 109.47124 * 300.00094 * 5 4 3 33 33 H 1.09001 * 109.46798 * 60.00190 * 7 6 5 34 34 H 1.08993 * 109.47318 * 299.99656 * 7 6 5 35 35 H 1.08992 * 109.47046 * 185.00128 * 8 7 6 36 36 H 1.08997 * 109.47395 * 305.00669 * 8 7 6 37 37 H 1.09000 * 109.46460 * 294.17358 * 10 9 8 38 38 H 1.09004 * 109.46244 * 54.15736 * 10 9 8 39 39 H 1.08997 * 109.50100 * 179.11908 * 11 10 9 40 40 H 1.08998 * 109.50454 * 299.20213 * 11 10 9 41 41 H 1.08999 * 109.52226 * 62.24362 * 12 11 10 42 42 H 1.08992 * 109.52608 * 182.37683 * 12 11 10 43 43 H 0.97005 * 119.99577 * 179.97438 * 18 17 15 44 44 H 1.09005 * 109.46084 * 305.86031 * 23 9 8 45 45 H 1.09005 * 109.46164 * 65.82069 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 0.0006 5 6 4.1577 2.5825 0.0013 6 8 5.5822 2.4698 0.0013 7 6 6.2646 3.7253 0.0013 8 6 7.7756 3.4845 0.0019 9 7 8.1675 2.8291 -1.2531 10 6 7.9562 3.7208 -2.4006 11 6 8.5083 3.0633 -3.6675 12 6 7.7944 1.7283 -3.8965 13 6 7.9893 0.8367 -2.6670 14 1 9.0506 0.6270 -2.5341 15 6 7.2411 -0.4571 -2.8599 16 1 6.4619 -0.7388 -2.1671 17 6 7.5512 -1.2812 -3.9208 18 7 8.4997 -0.9379 -4.7648 19 14 6.6233 -2.8846 -4.1604 20 1 5.4335 -2.6449 -5.0161 21 1 7.5121 -3.8777 -4.8154 22 1 6.1867 -3.4059 -2.8403 23 6 7.4524 1.5587 -1.4291 24 1 -0.3633 -1.0278 -0.0005 25 1 -0.3634 0.5137 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 1.6885 1.8463 0.8900 28 1 1.6885 1.8464 -0.8900 29 1 3.8574 0.6437 -0.8891 30 1 3.8567 0.6440 0.8908 31 1 3.8356 3.1232 0.8912 32 1 3.8364 3.1237 -0.8887 33 1 5.9867 4.2898 0.8913 34 1 5.9868 4.2898 -0.8887 35 1 8.2954 4.4382 0.0915 36 1 8.0413 2.8453 0.8439 37 1 6.8895 3.9078 -2.5237 38 1 8.4728 4.6648 -2.2269 39 1 8.3374 3.7186 -4.5216 40 1 9.5779 2.8893 -3.5507 41 1 6.7303 1.9063 -4.0523 42 1 8.2138 1.2367 -4.7742 43 1 8.7182 -1.5179 -5.5110 44 1 7.6027 0.9325 -0.5496 45 1 6.3879 1.7558 -1.5567 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397596200.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:40 Heat of formation + Delta-G solvation = -99.323522 kcal Electronic energy + Delta-G solvation = -22192.831483 eV Core-core repulsion = 19017.197856 eV Total energy + Delta-G solvation = -3175.633628 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -38.99426 -38.06618 -37.00036 -33.94871 -32.65118 -31.60302 -29.72836 -28.19357 -26.98063 -24.87718 -24.71027 -23.38626 -21.78110 -21.27176 -20.69421 -18.41063 -16.90640 -16.65948 -16.27171 -16.07484 -15.65936 -14.90724 -14.79871 -14.46366 -14.30190 -13.98211 -13.60574 -13.03532 -12.61226 -12.51574 -12.22885 -12.01765 -11.83434 -11.66929 -11.47376 -11.40897 -11.15029 -11.01318 -10.83789 -10.80058 -10.52399 -10.50668 -10.03456 -9.78576 -9.75710 -9.41739 -9.15787 -8.84390 -8.55011 -8.17415 -7.38540 -5.84874 -3.89390 3.36714 3.39410 3.45666 3.50845 4.12566 4.52329 4.74644 4.90022 5.01229 5.16067 5.16579 5.23318 5.26546 5.29990 5.40641 5.44113 5.45224 5.46864 5.49270 5.56347 5.71330 5.86850 5.93132 6.13599 6.16176 6.23801 6.29426 6.39996 6.69692 6.76180 6.86253 6.99158 7.04780 7.24599 7.35252 7.39557 7.54227 7.82398 7.90701 7.99678 8.25198 8.32881 8.65420 9.15578 9.74191 11.21299 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.010657 B = 0.006945 C = 0.004488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2626.777806 B = 4030.812404 C = 6236.810351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.388 6.388 3 C 0.067 3.933 4 C -0.122 4.122 5 C 0.065 3.935 6 O -0.362 6.362 7 C 0.025 3.975 8 C 0.057 3.943 9 N -0.536 5.536 10 C 0.061 3.939 11 C -0.117 4.117 12 C -0.109 4.109 13 C 0.051 3.949 14 H 0.029 0.971 15 C -0.505 4.505 16 H 0.054 0.946 17 C 0.061 3.939 18 N -0.892 5.892 19 Si 0.886 3.114 20 H -0.283 1.283 21 H -0.288 1.288 22 H -0.274 1.274 23 C 0.067 3.933 24 H 0.086 0.914 25 H 0.039 0.961 26 H 0.041 0.959 27 H 0.046 0.954 28 H 0.049 0.951 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.042 0.958 32 H 0.045 0.955 33 H 0.043 0.957 34 H 0.047 0.953 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.022 0.978 38 H 0.053 0.947 39 H 0.043 0.957 40 H 0.059 0.941 41 H 0.027 0.973 42 H 0.089 0.911 43 H 0.257 0.743 44 H 0.054 0.946 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.589 10.111 9.064 17.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.307 6.307 3 C -0.009 4.009 4 C -0.159 4.159 5 C -0.012 4.012 6 O -0.281 6.281 7 C -0.054 4.054 8 C -0.072 4.072 9 N -0.260 5.260 10 C -0.067 4.067 11 C -0.155 4.155 12 C -0.147 4.147 13 C 0.032 3.968 14 H 0.047 0.953 15 C -0.544 4.544 16 H 0.072 0.928 17 C -0.140 4.140 18 N -0.531 5.531 19 Si 0.715 3.285 20 H -0.209 1.209 21 H -0.214 1.214 22 H -0.199 1.199 23 C -0.059 4.059 24 H 0.104 0.896 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.107 0.893 30 H 0.097 0.903 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.040 0.960 38 H 0.072 0.928 39 H 0.062 0.938 40 H 0.078 0.922 41 H 0.046 0.954 42 H 0.107 0.893 43 H 0.067 0.933 44 H 0.073 0.927 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.779 9.584 8.927 16.345 hybrid contribution -1.819 -0.108 -0.234 1.837 sum -11.597 9.476 8.692 17.316 Atomic orbital electron populations 1.22736 0.81162 1.02793 0.99770 1.87923 1.19541 1.27832 1.95360 1.22367 0.93926 0.84727 0.99909 1.21384 0.92091 0.96976 1.05467 1.22231 0.82819 0.96723 0.99451 1.88246 1.16693 1.28407 1.94784 1.23335 0.95851 0.86589 0.99591 1.22308 0.90049 0.99772 0.95062 1.62178 1.57943 1.05366 1.00487 1.22039 0.97635 0.94887 0.92147 1.21670 1.00891 0.98583 0.94353 1.21632 0.97134 0.92613 1.03320 1.18717 0.96867 0.92279 0.88916 0.95316 1.21174 1.18937 1.03869 1.10387 0.92777 1.24927 0.95153 0.97765 0.96106 1.69907 1.30643 1.37277 1.15294 0.86683 0.79673 0.83899 0.78276 1.20913 1.21396 1.19882 1.22496 0.96108 0.87419 0.99859 0.89585 0.94261 0.94087 0.93530 0.93225 0.89276 0.90278 0.93987 0.93651 0.93898 0.93471 0.90254 0.90325 0.96006 0.92830 0.93810 0.92200 0.95399 0.89303 0.93281 0.92699 0.92976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.42 16 2 O -0.39 -5.31 10.70 -35.23 -0.38 -5.69 16 3 C 0.07 0.80 5.94 37.16 0.22 1.02 16 4 C -0.12 -1.71 5.95 -26.73 -0.16 -1.87 16 5 C 0.06 0.86 5.94 37.16 0.22 1.08 16 6 O -0.36 -5.92 6.79 -35.23 -0.24 -6.16 16 7 C 0.02 0.35 5.75 37.16 0.21 0.56 16 8 C 0.06 0.86 5.93 -3.82 -0.02 0.84 16 9 N -0.54 -10.27 4.86 -234.67 -1.14 -11.41 16 10 C 0.06 1.10 5.06 -3.83 -0.02 1.08 16 11 C -0.12 -2.37 6.09 -26.65 -0.16 -2.53 16 12 C -0.11 -2.67 5.02 -26.61 -0.13 -2.81 16 13 C 0.05 1.33 2.26 -91.69 -0.21 1.12 16 14 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 15 C -0.50 -14.35 8.57 -34.44 -0.30 -14.64 16 16 H 0.05 1.54 7.75 -52.48 -0.41 1.13 16 17 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 18 N -0.89 -26.22 11.35 55.43 0.63 -25.59 16 19 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 20 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 23 C 0.07 1.51 3.45 -3.84 -0.01 1.49 16 24 H 0.09 0.72 8.14 -51.92 -0.42 0.29 16 25 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 30 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.05 0.66 6.46 -51.93 -0.34 0.33 16 35 H 0.08 1.00 8.06 -51.93 -0.42 0.59 16 36 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.02 0.39 6.65 -51.93 -0.35 0.05 16 38 H 0.05 0.83 8.06 -51.93 -0.42 0.41 16 39 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.09 2.43 6.15 -51.93 -0.32 2.11 16 43 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 44 H 0.05 1.28 8.12 -51.93 -0.42 0.86 16 45 H 0.05 1.19 5.58 -51.93 -0.29 0.90 16 LS Contribution 348.10 15.07 5.25 5.25 Total: -1.00 -30.88 348.10 -8.67 -39.56 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -8.43 Total: -1.42 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: 0.66 Total: -11.59 kcal Atomic # 7 Polarization: -36.49 SS G_CDS: -0.51 Total: -37.00 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: -0.62 Total: -11.84 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.88 -8.67 -39.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397596200.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.766 kcal (2) G-P(sol) polarization free energy of solvation -30.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds