Wall clock time and date at job start Mon Mar 30 2020 06:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 113.99734 * 2 1 4 4 C 1.53003 * 109.47204 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47106 * 180.02562 * 4 3 2 6 6 O 1.42901 * 109.47084 * 180.02562 * 5 4 3 7 7 C 1.42895 * 113.99948 * 179.97438 * 6 5 4 8 8 C 1.53006 * 109.47036 * 179.97438 * 7 6 5 9 9 N 1.46904 * 109.46673 * 65.00189 * 8 7 6 10 10 C 1.46845 * 110.99822 * 66.04689 * 9 8 7 11 11 C 1.53041 * 109.52091 * 174.15602 * 10 9 8 12 12 C 1.53118 * 109.27869 * 59.18074 * 11 10 9 13 13 C 1.53120 * 109.16081 * 302.34571 * 12 11 10 14 14 H 1.08999 * 109.50504 * 297.71406 * 13 12 11 15 15 C 1.50698 * 109.50388 * 177.63506 * 13 12 11 16 16 H 1.08005 * 119.99868 * 239.99711 * 15 13 12 17 17 C 1.37871 * 120.00408 * 59.99818 * 15 13 12 18 18 N 1.31522 * 119.99572 * 359.97438 * 17 15 13 19 19 Si 1.86795 * 120.00331 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47334 * 89.99961 * 19 17 15 21 21 H 1.48506 * 109.47011 * 209.99994 * 19 17 15 22 22 H 1.48501 * 109.47260 * 329.99772 * 19 17 15 23 23 C 1.46842 * 111.00416 * 301.83447 * 9 8 7 24 24 H 1.09008 * 109.46707 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47491 * 299.99676 * 1 2 3 26 26 H 1.08996 * 109.47296 * 60.00226 * 1 2 3 27 27 H 1.09004 * 109.46814 * 60.00015 * 3 2 1 28 28 H 1.09003 * 109.47291 * 300.00160 * 3 2 1 29 29 H 1.09000 * 109.46622 * 59.99799 * 4 3 2 30 30 H 1.08999 * 109.46719 * 300.00262 * 4 3 2 31 31 H 1.08995 * 109.46983 * 59.99821 * 5 4 3 32 32 H 1.09003 * 109.47124 * 300.00094 * 5 4 3 33 33 H 1.09001 * 109.46798 * 60.00190 * 7 6 5 34 34 H 1.08993 * 109.47318 * 299.99656 * 7 6 5 35 35 H 1.08992 * 109.47046 * 185.00128 * 8 7 6 36 36 H 1.08997 * 109.47395 * 305.00669 * 8 7 6 37 37 H 1.09000 * 109.46460 * 294.17358 * 10 9 8 38 38 H 1.09004 * 109.46244 * 54.15736 * 10 9 8 39 39 H 1.08997 * 109.50100 * 179.11908 * 11 10 9 40 40 H 1.08998 * 109.50454 * 299.20213 * 11 10 9 41 41 H 1.08999 * 109.52226 * 62.24362 * 12 11 10 42 42 H 1.08992 * 109.52608 * 182.37683 * 12 11 10 43 43 H 0.97005 * 119.99577 * 179.97438 * 18 17 15 44 44 H 1.09005 * 109.46084 * 305.86031 * 23 9 8 45 45 H 1.09005 * 109.46164 * 65.82069 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 0.0006 5 6 4.1577 2.5825 0.0013 6 8 5.5822 2.4698 0.0013 7 6 6.2646 3.7253 0.0013 8 6 7.7756 3.4845 0.0019 9 7 8.1675 2.8291 -1.2531 10 6 7.9562 3.7208 -2.4006 11 6 8.5083 3.0633 -3.6675 12 6 7.7944 1.7283 -3.8965 13 6 7.9893 0.8367 -2.6670 14 1 9.0506 0.6270 -2.5341 15 6 7.2411 -0.4571 -2.8599 16 1 6.4619 -0.7388 -2.1671 17 6 7.5512 -1.2812 -3.9208 18 7 8.4997 -0.9379 -4.7648 19 14 6.6233 -2.8846 -4.1604 20 1 5.4335 -2.6449 -5.0161 21 1 7.5121 -3.8777 -4.8154 22 1 6.1867 -3.4059 -2.8403 23 6 7.4524 1.5587 -1.4291 24 1 -0.3633 -1.0278 -0.0005 25 1 -0.3634 0.5137 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 1.6885 1.8463 0.8900 28 1 1.6885 1.8464 -0.8900 29 1 3.8574 0.6437 -0.8891 30 1 3.8567 0.6440 0.8908 31 1 3.8356 3.1232 0.8912 32 1 3.8364 3.1237 -0.8887 33 1 5.9867 4.2898 0.8913 34 1 5.9868 4.2898 -0.8887 35 1 8.2954 4.4382 0.0915 36 1 8.0413 2.8453 0.8439 37 1 6.8895 3.9078 -2.5237 38 1 8.4728 4.6648 -2.2269 39 1 8.3374 3.7186 -4.5216 40 1 9.5779 2.8893 -3.5507 41 1 6.7303 1.9063 -4.0523 42 1 8.2138 1.2367 -4.7742 43 1 8.7182 -1.5179 -5.5110 44 1 7.6027 0.9325 -0.5496 45 1 6.3879 1.7558 -1.5567 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397596200.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:38 Heat of formation + Delta-G solvation = -120.115761 kcal Electronic energy + Delta-G solvation = -22193.733103 eV Core-core repulsion = 19017.197856 eV Total energy + Delta-G solvation = -3176.535247 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -40.37549 -39.08376 -38.30682 -35.70896 -34.06901 -33.16984 -31.60523 -29.51484 -27.85862 -26.87917 -25.76506 -24.80584 -23.28208 -22.61288 -22.20608 -20.15491 -18.45009 -17.91296 -17.58777 -17.13115 -16.88869 -16.54815 -16.10810 -15.80105 -15.59209 -15.44048 -15.01956 -14.61308 -14.27453 -13.95819 -13.86986 -13.25297 -13.17005 -12.96544 -12.85067 -12.73247 -12.62681 -12.52682 -12.40447 -12.21829 -11.99396 -11.92228 -11.73287 -11.63539 -11.32994 -10.79518 -10.66498 -10.62057 -10.43577 -10.28439 -8.88587 -8.05672 -6.18373 1.38851 1.39274 1.50607 2.41862 2.43860 3.13042 3.20595 3.34787 3.89577 4.08255 4.12246 4.19454 4.23536 4.29362 4.36704 4.38491 4.42656 4.47890 4.50001 4.53900 4.54253 4.58586 4.69821 4.78231 4.82200 4.91667 5.01778 5.03687 5.07816 5.14396 5.14769 5.24731 5.35442 5.47571 5.58317 5.66943 6.01991 6.19258 6.20965 6.28609 6.33163 6.50737 6.56679 6.94760 7.48673 8.99022 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.010657 B = 0.006945 C = 0.004488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2626.777806 B = 4030.812404 C = 6236.810351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.425 6.425 3 C 0.071 3.929 4 C -0.120 4.120 5 C 0.067 3.933 6 O -0.398 6.398 7 C 0.025 3.975 8 C 0.055 3.945 9 N -0.553 5.553 10 C 0.066 3.934 11 C -0.112 4.112 12 C -0.100 4.100 13 C 0.048 3.952 14 H -0.012 1.012 15 C -0.527 4.527 16 H 0.044 0.956 17 C 0.015 3.985 18 N -0.916 5.916 19 Si 0.948 3.052 20 H -0.275 1.275 21 H -0.280 1.280 22 H -0.272 1.272 23 C 0.092 3.908 24 H 0.093 0.907 25 H 0.058 0.942 26 H 0.050 0.950 27 H 0.074 0.926 28 H 0.059 0.941 29 H 0.048 0.952 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.051 0.949 33 H 0.076 0.924 34 H 0.050 0.950 35 H 0.114 0.886 36 H 0.072 0.928 37 H 0.027 0.973 38 H 0.092 0.908 39 H 0.069 0.931 40 H 0.048 0.952 41 H 0.018 0.982 42 H 0.055 0.945 43 H 0.259 0.741 44 H 0.034 0.966 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.974 12.140 10.063 19.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.345 6.345 3 C -0.005 4.005 4 C -0.158 4.158 5 C -0.010 4.010 6 O -0.318 6.318 7 C -0.052 4.052 8 C -0.073 4.073 9 N -0.276 5.276 10 C -0.062 4.062 11 C -0.150 4.150 12 C -0.139 4.139 13 C 0.029 3.971 14 H 0.006 0.994 15 C -0.566 4.566 16 H 0.063 0.937 17 C -0.184 4.184 18 N -0.556 5.556 19 Si 0.774 3.226 20 H -0.201 1.201 21 H -0.206 1.206 22 H -0.197 1.197 23 C -0.036 4.036 24 H 0.111 0.889 25 H 0.077 0.923 26 H 0.068 0.932 27 H 0.092 0.908 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.069 0.931 33 H 0.094 0.906 34 H 0.068 0.932 35 H 0.132 0.868 36 H 0.091 0.909 37 H 0.045 0.955 38 H 0.110 0.890 39 H 0.088 0.912 40 H 0.067 0.933 41 H 0.037 0.963 42 H 0.073 0.927 43 H 0.068 0.932 44 H 0.053 0.947 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -11.172 11.632 9.936 18.944 hybrid contribution -1.375 -0.744 -0.519 1.647 sum -12.547 10.889 9.417 19.097 Atomic orbital electron populations 1.22945 0.79127 1.03821 1.01152 1.87870 1.21913 1.29021 1.95658 1.22378 0.92026 0.84513 1.01628 1.21356 0.94218 0.97327 1.02882 1.22313 0.81380 0.96164 1.01121 1.88176 1.18402 1.30198 1.95045 1.23367 0.94620 0.85983 1.01261 1.22440 0.91587 1.00780 0.92467 1.62050 1.58041 1.04802 1.02740 1.22038 0.98249 0.95575 0.90290 1.21597 0.99638 0.96676 0.97084 1.21412 0.96745 0.94685 1.01032 1.18674 0.94110 0.92620 0.91720 0.99419 1.21481 1.19114 1.05484 1.10486 0.93742 1.25669 0.95971 1.00944 0.95786 1.70043 1.31644 1.38346 1.15583 0.85715 0.78653 0.80037 0.78233 1.20100 1.20557 1.19692 1.22016 0.95905 0.88818 0.96812 0.88894 0.92342 0.93161 0.90809 0.92276 0.93308 0.91383 0.90873 0.93094 0.90574 0.93205 0.86786 0.90932 0.95532 0.88973 0.91243 0.93293 0.96280 0.92666 0.93154 0.94749 0.93304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 113.37 1.25 1.69 16 2 O -0.42 -11.40 10.70 -148.98 -1.59 -12.99 16 3 C 0.07 1.59 5.94 71.98 0.43 2.02 16 4 C -0.12 -3.40 5.95 30.60 0.18 -3.22 16 5 C 0.07 1.66 5.94 71.98 0.43 2.09 16 6 O -0.40 -12.58 6.79 -148.98 -1.01 -13.59 16 7 C 0.03 0.63 5.75 71.98 0.41 1.05 16 8 C 0.06 1.52 5.93 86.30 0.51 2.03 16 9 N -0.55 -20.54 4.86 -896.35 -4.35 -24.89 16 10 C 0.07 2.21 5.06 86.33 0.44 2.65 16 11 C -0.11 -4.45 6.09 30.65 0.19 -4.26 16 12 C -0.10 -5.08 5.02 30.67 0.15 -4.92 16 13 C 0.05 2.60 2.26 -11.49 -0.03 2.57 16 14 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 15 C -0.53 -31.28 8.57 25.60 0.22 -31.06 16 16 H 0.04 2.65 7.75 -2.91 -0.02 2.63 16 17 C 0.01 0.85 5.30 84.65 0.45 1.30 16 18 N -0.92 -55.64 11.35 21.45 0.24 -55.40 16 19 Si 0.95 46.36 29.54 68.60 2.03 48.38 16 20 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 21 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 22 H -0.27 -13.13 7.11 99.48 0.71 -12.42 16 23 C 0.09 4.20 3.45 86.33 0.30 4.50 16 24 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 25 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 28 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.05 1.23 6.46 -2.39 -0.02 1.21 16 35 H 0.11 2.37 8.06 -2.39 -0.02 2.35 16 36 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.03 0.88 6.65 -2.39 -0.02 0.86 16 38 H 0.09 2.44 8.06 -2.39 -0.02 2.43 16 39 H 0.07 2.38 8.14 -2.39 -0.02 2.37 16 40 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.05 3.14 6.15 -2.39 -0.01 3.12 16 43 H 0.26 14.93 8.31 -92.70 -0.77 14.16 16 44 H 0.03 1.67 8.12 -2.38 -0.02 1.65 16 45 H 0.05 2.28 5.58 -2.38 -0.01 2.27 16 Total: -1.00 -70.28 348.10 1.16 -69.13 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: 0.92 Total: 12.92 kcal Atomic # 6 Polarization: -28.48 SS G_CDS: 4.93 Total: -23.56 kcal Atomic # 7 Polarization: -76.18 SS G_CDS: -4.11 Total: -80.29 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -2.61 Total: -26.58 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.38 kcal Total: -70.28 1.16 -69.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397596200.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.990 kcal (2) G-P(sol) polarization free energy of solvation -70.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds