Wall clock time and date at job start Mon Mar 30 2020 06:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42904 * 113.99353 * 2 1 4 4 C 1.53001 * 109.46625 * 179.97438 * 3 2 1 5 5 O 1.42907 * 109.47085 * 65.00180 * 4 3 2 6 6 C 1.42903 * 113.99838 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.46726 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47060 * 180.02562 * 7 6 5 9 9 N 1.46894 * 109.47515 * 180.02562 * 8 7 6 10 10 C 1.46848 * 110.99689 * 66.04595 * 9 8 7 11 11 C 1.53037 * 109.52293 * 174.16222 * 10 9 8 12 12 C 1.53120 * 109.27737 * 59.17885 * 11 10 9 13 13 C 1.53120 * 109.16234 * 302.34552 * 12 11 10 14 14 H 1.09002 * 109.50018 * 297.71267 * 13 12 11 15 15 C 1.50699 * 109.50361 * 177.63490 * 13 12 11 16 16 H 1.07998 * 119.99992 * 239.99815 * 15 13 12 17 17 C 1.37880 * 119.99928 * 60.00279 * 15 13 12 18 18 N 1.31516 * 120.00126 * 359.97438 * 17 15 13 19 19 Si 1.86798 * 119.99707 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47623 * 359.97438 * 19 17 15 21 21 H 1.48508 * 109.47207 * 119.99717 * 19 17 15 22 22 H 1.48499 * 109.47059 * 239.99384 * 19 17 15 23 23 C 1.46847 * 111.00204 * 301.83855 * 9 8 7 24 24 H 1.09002 * 109.47122 * 60.00053 * 1 2 3 25 25 H 1.09003 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47271 * 300.00166 * 1 2 3 27 27 H 1.08993 * 109.47166 * 60.00269 * 3 2 1 28 28 H 1.08999 * 109.47610 * 299.99559 * 3 2 1 29 29 H 1.09004 * 109.47670 * 305.00157 * 4 3 2 30 30 H 1.08996 * 109.47060 * 184.99889 * 4 3 2 31 31 H 1.09001 * 109.46938 * 60.00058 * 6 5 4 32 32 H 1.08992 * 109.47388 * 300.00049 * 6 5 4 33 33 H 1.09002 * 109.47398 * 300.00244 * 7 6 5 34 34 H 1.09001 * 109.47194 * 60.00425 * 7 6 5 35 35 H 1.09002 * 109.47153 * 300.00319 * 8 7 6 36 36 H 1.08998 * 109.47533 * 59.99948 * 8 7 6 37 37 H 1.08997 * 109.46232 * 294.17446 * 10 9 8 38 38 H 1.08996 * 109.46746 * 54.16235 * 10 9 8 39 39 H 1.08996 * 109.50580 * 179.11755 * 11 10 9 40 40 H 1.09000 * 109.50355 * 299.20041 * 11 10 9 41 41 H 1.09005 * 109.52294 * 62.25474 * 12 11 10 42 42 H 1.09005 * 109.52362 * 182.37748 * 12 11 10 43 43 H 0.96998 * 119.99535 * 180.02562 * 18 17 15 44 44 H 1.08998 * 109.45819 * 305.85399 * 23 9 8 45 45 H 1.09001 * 109.46448 * 65.81965 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5354 1.1848 0.0006 5 8 3.9658 0.5794 -1.2202 6 6 5.3823 0.4199 -1.3221 7 6 5.7266 -0.2349 -2.6613 8 6 7.2431 -0.4062 -2.7702 9 7 7.5739 -1.0343 -4.0562 10 6 7.2414 -0.1454 -5.1769 11 6 7.7310 -0.7682 -6.4863 12 6 7.0636 -2.1330 -6.6775 13 6 7.3857 -3.0231 -5.4739 14 1 8.4623 -3.1848 -5.4188 15 6 6.6849 -4.3484 -5.6264 16 1 5.9707 -4.6703 -4.8830 17 6 6.9557 -5.1502 -6.7149 18 7 7.8252 -4.7581 -7.6204 19 14 6.0865 -6.7928 -6.9043 20 1 5.1630 -6.9990 -5.7598 21 1 5.3135 -6.8005 -8.1723 22 1 7.0923 -7.8849 -6.9311 23 6 6.9062 -2.3349 -4.1939 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.6885 1.8464 0.8899 28 1 1.6886 1.8465 -0.8900 29 1 3.8508 0.5686 0.8427 30 1 3.9783 2.1767 0.0902 31 1 5.7362 -0.2119 -0.5074 32 1 5.8632 1.3960 -1.2601 33 1 5.2457 -1.2111 -2.7229 34 1 5.3726 0.3966 -3.4762 35 1 7.7244 0.5699 -2.7085 36 1 7.5969 -1.0378 -1.9554 37 1 6.1612 -0.0068 -5.2223 38 1 7.7258 0.8200 -5.0308 39 1 7.4702 -0.1157 -7.3195 40 1 8.8130 -0.8939 -6.4473 41 1 5.9842 -2.0029 -6.7559 42 1 7.4413 -2.5989 -7.5877 43 1 8.0154 -5.3221 -8.3863 44 1 7.1469 -2.9595 -3.3337 45 1 5.8276 -2.1859 -4.2439 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397725517.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:38 Heat of formation + Delta-G solvation = -104.729200 kcal Electronic energy + Delta-G solvation = -21290.591503 eV Core-core repulsion = 18114.723468 eV Total energy + Delta-G solvation = -3175.868036 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -38.83169 -38.34120 -37.28522 -34.37055 -32.45234 -30.98602 -29.82790 -29.44558 -26.51166 -25.12972 -24.88625 -22.76426 -22.60982 -21.43164 -20.67073 -18.22886 -17.15788 -16.98367 -16.31274 -15.81164 -15.60551 -15.52851 -14.87730 -14.42377 -14.19713 -14.02627 -13.78363 -13.09891 -12.95443 -12.68198 -12.38118 -12.32708 -11.89644 -11.81449 -11.63254 -11.41086 -11.27363 -10.96104 -10.91457 -10.84457 -10.59035 -10.32627 -9.98392 -9.93779 -9.77690 -9.63325 -9.40460 -8.97284 -8.63213 -8.24888 -7.57516 -5.91945 -3.97632 3.34140 3.42005 3.46514 3.50024 3.55871 4.45608 4.65420 4.74575 4.89691 4.98559 5.03854 5.07765 5.11743 5.21533 5.29810 5.38148 5.43847 5.45643 5.48346 5.52719 5.61821 5.75857 5.91559 5.93099 6.10881 6.18225 6.39040 6.42754 6.52649 6.59621 6.79050 6.83510 6.88615 7.04868 7.15915 7.28423 7.46828 7.72628 7.81745 7.89090 8.15075 8.23837 8.54926 9.06865 9.66500 11.14095 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.016765 B = 0.003750 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.715284 B = 7465.148982 C = 8688.714655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.063 3.937 4 C 0.063 3.937 5 O -0.381 6.381 6 C 0.068 3.932 7 C -0.158 4.158 8 C 0.060 3.940 9 N -0.534 5.534 10 C 0.060 3.940 11 C -0.118 4.118 12 C -0.111 4.111 13 C 0.054 3.946 14 H 0.033 0.967 15 C -0.512 4.512 16 H 0.054 0.946 17 C 0.062 3.938 18 N -0.889 5.889 19 Si 0.889 3.111 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.285 1.285 23 C 0.064 3.936 24 H 0.041 0.959 25 H 0.086 0.914 26 H 0.038 0.962 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.048 0.952 32 H 0.045 0.955 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.027 0.973 38 H 0.056 0.944 39 H 0.045 0.955 40 H 0.060 0.940 41 H 0.029 0.971 42 H 0.090 0.910 43 H 0.258 0.742 44 H 0.058 0.942 45 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.226 14.210 13.731 21.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.301 6.301 3 C -0.014 4.014 4 C -0.014 4.014 5 O -0.300 6.300 6 C -0.009 4.009 7 C -0.198 4.198 8 C -0.069 4.069 9 N -0.257 5.257 10 C -0.068 4.068 11 C -0.156 4.156 12 C -0.149 4.149 13 C 0.035 3.965 14 H 0.051 0.949 15 C -0.551 4.551 16 H 0.072 0.928 17 C -0.139 4.139 18 N -0.528 5.528 19 Si 0.717 3.283 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.063 4.063 24 H 0.060 0.940 25 H 0.105 0.895 26 H 0.057 0.943 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.045 0.955 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.078 0.922 41 H 0.048 0.952 42 H 0.109 0.891 43 H 0.068 0.932 44 H 0.076 0.924 45 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -7.640 13.832 13.396 20.716 hybrid contribution -1.466 -0.368 0.103 1.515 sum -9.107 13.464 13.499 21.129 Atomic orbital electron populations 1.22752 0.81125 1.02962 0.99729 1.87997 1.19547 1.27196 1.95329 1.22564 0.92591 0.85576 1.00670 1.22477 0.93240 0.97413 0.88273 1.87988 1.22665 1.81925 1.37410 1.22478 0.80919 0.98975 0.98496 1.22283 0.99186 1.02228 0.96060 1.22096 0.91771 0.99457 0.93588 1.62276 1.58533 1.04364 1.00541 1.22052 0.97671 0.94970 0.92103 1.21680 1.01036 0.98632 0.94216 1.21653 0.97402 0.92295 1.03547 1.18671 0.97180 0.92360 0.88287 0.94882 1.21208 1.24004 1.02527 1.07380 0.92779 1.24936 0.95144 0.97908 0.95914 1.69907 1.33942 1.37177 1.11788 0.86582 0.79559 0.84187 0.77935 1.19832 1.21128 1.21079 1.22343 0.95161 0.87737 1.01039 0.94002 0.89499 0.94309 0.92025 0.92432 0.92544 0.92004 0.93336 0.93678 0.90373 0.91255 0.91553 0.91018 0.95521 0.92579 0.93620 0.92165 0.95189 0.89139 0.93183 0.92371 0.95693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.38 -4.67 10.67 -40.08 -0.43 -5.10 16 3 C 0.06 0.60 6.32 37.16 0.23 0.83 16 4 C 0.06 0.64 6.32 37.16 0.23 0.88 16 5 O -0.38 -5.33 10.31 -40.08 -0.41 -5.74 16 6 C 0.07 0.85 5.94 37.16 0.22 1.07 16 7 C -0.16 -2.34 4.88 -26.73 -0.13 -2.48 16 8 C 0.06 0.90 5.36 -3.83 -0.02 0.88 16 9 N -0.53 -10.08 4.86 -234.68 -1.14 -11.22 16 10 C 0.06 1.08 5.05 -3.83 -0.02 1.06 16 11 C -0.12 -2.37 6.09 -26.65 -0.16 -2.53 16 12 C -0.11 -2.69 5.02 -26.61 -0.13 -2.83 16 13 C 0.05 1.38 2.26 -91.69 -0.21 1.17 16 14 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 15 C -0.51 -14.37 8.57 -34.44 -0.29 -14.67 16 16 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 17 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 18 N -0.89 -25.78 11.35 55.43 0.63 -25.16 16 19 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 20 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 23 C 0.06 1.40 4.06 -3.84 -0.02 1.38 16 24 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.08 1.33 6.51 -51.93 -0.34 1.00 16 34 H 0.07 1.08 6.68 -51.93 -0.35 0.73 16 35 H 0.07 0.87 8.06 -51.93 -0.42 0.46 16 36 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.03 0.49 6.75 -51.93 -0.35 0.14 16 38 H 0.06 0.88 8.06 -51.93 -0.42 0.47 16 39 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.09 2.45 6.15 -51.93 -0.32 2.13 16 43 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 44 H 0.06 1.26 8.12 -51.93 -0.42 0.84 16 45 H 0.02 0.56 6.61 -51.93 -0.34 0.21 16 LS Contribution 351.22 15.07 5.29 5.29 Total: -1.00 -30.90 351.22 -8.77 -39.67 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -8.42 Total: -2.20 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: 0.72 Total: -12.19 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: -0.51 Total: -36.38 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: -0.84 Total: -10.84 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.90 -8.77 -39.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397725517.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.060 kcal (2) G-P(sol) polarization free energy of solvation -30.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds