Wall clock time and date at job start Mon Mar 30 2020 06:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42904 * 113.99353 * 2 1 4 4 C 1.53001 * 109.46625 * 179.97438 * 3 2 1 5 5 O 1.42907 * 109.47085 * 65.00180 * 4 3 2 6 6 C 1.42903 * 113.99838 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.46726 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47060 * 180.02562 * 7 6 5 9 9 N 1.46894 * 109.47515 * 180.02562 * 8 7 6 10 10 C 1.46848 * 110.99689 * 66.04595 * 9 8 7 11 11 C 1.53037 * 109.52293 * 174.16222 * 10 9 8 12 12 C 1.53120 * 109.27737 * 59.17885 * 11 10 9 13 13 C 1.53120 * 109.16234 * 302.34552 * 12 11 10 14 14 H 1.09002 * 109.50018 * 297.71267 * 13 12 11 15 15 C 1.50699 * 109.50361 * 177.63490 * 13 12 11 16 16 H 1.07998 * 119.99992 * 239.99815 * 15 13 12 17 17 C 1.37880 * 119.99928 * 60.00279 * 15 13 12 18 18 N 1.31516 * 120.00126 * 359.97438 * 17 15 13 19 19 Si 1.86798 * 119.99707 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47623 * 359.97438 * 19 17 15 21 21 H 1.48508 * 109.47207 * 119.99717 * 19 17 15 22 22 H 1.48499 * 109.47059 * 239.99384 * 19 17 15 23 23 C 1.46847 * 111.00204 * 301.83855 * 9 8 7 24 24 H 1.09002 * 109.47122 * 60.00053 * 1 2 3 25 25 H 1.09003 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47271 * 300.00166 * 1 2 3 27 27 H 1.08993 * 109.47166 * 60.00269 * 3 2 1 28 28 H 1.08999 * 109.47610 * 299.99559 * 3 2 1 29 29 H 1.09004 * 109.47670 * 305.00157 * 4 3 2 30 30 H 1.08996 * 109.47060 * 184.99889 * 4 3 2 31 31 H 1.09001 * 109.46938 * 60.00058 * 6 5 4 32 32 H 1.08992 * 109.47388 * 300.00049 * 6 5 4 33 33 H 1.09002 * 109.47398 * 300.00244 * 7 6 5 34 34 H 1.09001 * 109.47194 * 60.00425 * 7 6 5 35 35 H 1.09002 * 109.47153 * 300.00319 * 8 7 6 36 36 H 1.08998 * 109.47533 * 59.99948 * 8 7 6 37 37 H 1.08997 * 109.46232 * 294.17446 * 10 9 8 38 38 H 1.08996 * 109.46746 * 54.16235 * 10 9 8 39 39 H 1.08996 * 109.50580 * 179.11755 * 11 10 9 40 40 H 1.09000 * 109.50355 * 299.20041 * 11 10 9 41 41 H 1.09005 * 109.52294 * 62.25474 * 12 11 10 42 42 H 1.09005 * 109.52362 * 182.37748 * 12 11 10 43 43 H 0.96998 * 119.99535 * 180.02562 * 18 17 15 44 44 H 1.08998 * 109.45819 * 305.85399 * 23 9 8 45 45 H 1.09001 * 109.46448 * 65.81965 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5354 1.1848 0.0006 5 8 3.9658 0.5794 -1.2202 6 6 5.3823 0.4199 -1.3221 7 6 5.7266 -0.2349 -2.6613 8 6 7.2431 -0.4062 -2.7702 9 7 7.5739 -1.0343 -4.0562 10 6 7.2414 -0.1454 -5.1769 11 6 7.7310 -0.7682 -6.4863 12 6 7.0636 -2.1330 -6.6775 13 6 7.3857 -3.0231 -5.4739 14 1 8.4623 -3.1848 -5.4188 15 6 6.6849 -4.3484 -5.6264 16 1 5.9707 -4.6703 -4.8830 17 6 6.9557 -5.1502 -6.7149 18 7 7.8252 -4.7581 -7.6204 19 14 6.0865 -6.7928 -6.9043 20 1 5.1630 -6.9990 -5.7598 21 1 5.3135 -6.8005 -8.1723 22 1 7.0923 -7.8849 -6.9311 23 6 6.9062 -2.3349 -4.1939 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.6885 1.8464 0.8899 28 1 1.6886 1.8465 -0.8900 29 1 3.8508 0.5686 0.8427 30 1 3.9783 2.1767 0.0902 31 1 5.7362 -0.2119 -0.5074 32 1 5.8632 1.3960 -1.2601 33 1 5.2457 -1.2111 -2.7229 34 1 5.3726 0.3966 -3.4762 35 1 7.7244 0.5699 -2.7085 36 1 7.5969 -1.0378 -1.9554 37 1 6.1612 -0.0068 -5.2223 38 1 7.7258 0.8200 -5.0308 39 1 7.4702 -0.1157 -7.3195 40 1 8.8130 -0.8939 -6.4473 41 1 5.9842 -2.0029 -6.7559 42 1 7.4413 -2.5989 -7.5877 43 1 8.0154 -5.3221 -8.3863 44 1 7.1469 -2.9595 -3.3337 45 1 5.8276 -2.1859 -4.2439 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397725517.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:37 Heat of formation + Delta-G solvation = -125.577224 kcal Electronic energy + Delta-G solvation = -21291.495541 eV Core-core repulsion = 18114.723468 eV Total energy + Delta-G solvation = -3176.772074 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.17845 -39.36902 -38.20547 -36.06354 -34.20704 -32.16878 -31.67859 -30.52704 -27.22534 -26.94556 -26.42398 -23.94962 -23.51925 -23.16804 -22.17335 -19.94944 -18.48856 -17.92971 -17.76576 -16.85410 -16.76499 -16.40434 -16.32897 -15.90213 -15.75742 -15.26661 -15.00809 -14.75128 -14.41095 -14.02676 -13.91707 -13.43838 -13.37506 -12.92870 -12.88151 -12.83356 -12.65856 -12.49657 -12.45812 -12.09166 -11.93194 -11.89490 -11.72035 -11.45512 -11.37496 -10.84821 -10.66874 -10.64853 -10.54575 -10.37641 -9.09398 -8.08112 -6.22125 1.39546 1.40954 1.52866 2.42808 2.67584 2.86433 3.18287 3.18943 3.94015 4.00233 4.15116 4.21513 4.25173 4.27888 4.32582 4.40177 4.43541 4.47460 4.51629 4.53358 4.56789 4.65035 4.67159 4.73431 4.78288 4.80758 4.83786 4.92675 4.96568 5.09430 5.15075 5.19958 5.30656 5.41802 5.53630 5.63948 5.97325 6.13065 6.17719 6.21585 6.31470 6.41466 6.46995 6.90604 7.45612 8.96723 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.016765 B = 0.003750 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.715284 B = 7465.148982 C = 8688.714655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.420 6.420 3 C 0.057 3.943 4 C 0.056 3.944 5 O -0.414 6.414 6 C 0.072 3.928 7 C -0.150 4.150 8 C 0.063 3.937 9 N -0.545 5.545 10 C 0.064 3.936 11 C -0.112 4.112 12 C -0.105 4.105 13 C 0.052 3.948 14 H -0.003 1.003 15 C -0.537 4.537 16 H 0.048 0.952 17 C 0.014 3.986 18 N -0.915 5.915 19 Si 0.954 3.046 20 H -0.270 1.270 21 H -0.279 1.279 22 H -0.278 1.278 23 C 0.081 3.919 24 H 0.045 0.955 25 H 0.088 0.912 26 H 0.060 0.940 27 H 0.092 0.908 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.091 0.909 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.045 0.955 34 H 0.061 0.939 35 H 0.097 0.903 36 H 0.077 0.923 37 H 0.026 0.974 38 H 0.092 0.908 39 H 0.069 0.931 40 H 0.052 0.948 41 H 0.019 0.981 42 H 0.058 0.942 43 H 0.260 0.740 44 H 0.052 0.948 45 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.702 15.928 15.102 23.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.339 6.339 3 C -0.019 4.019 4 C -0.020 4.020 5 O -0.334 6.334 6 C -0.004 4.004 7 C -0.190 4.190 8 C -0.065 4.065 9 N -0.268 5.268 10 C -0.064 4.064 11 C -0.150 4.150 12 C -0.143 4.143 13 C 0.033 3.967 14 H 0.015 0.985 15 C -0.575 4.575 16 H 0.066 0.934 17 C -0.185 4.185 18 N -0.554 5.554 19 Si 0.780 3.220 20 H -0.194 1.194 21 H -0.205 1.205 22 H -0.204 1.204 23 C -0.046 4.046 24 H 0.063 0.937 25 H 0.106 0.894 26 H 0.078 0.922 27 H 0.110 0.890 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.108 0.892 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.116 0.884 36 H 0.096 0.904 37 H 0.044 0.956 38 H 0.110 0.890 39 H 0.088 0.912 40 H 0.071 0.929 41 H 0.037 0.963 42 H 0.077 0.923 43 H 0.070 0.930 44 H 0.071 0.929 45 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -8.121 15.567 14.783 22.953 hybrid contribution -1.324 -0.877 -0.304 1.617 sum -9.444 14.690 14.479 22.685 Atomic orbital electron populations 1.22900 0.79666 1.03530 1.00937 1.87940 1.21406 1.28992 1.95607 1.22761 0.92218 0.84874 1.02013 1.22751 0.93826 0.98621 0.86825 1.87940 1.23326 1.82705 1.39393 1.22432 0.80829 1.00237 0.96948 1.22140 0.98659 1.00597 0.97579 1.22180 0.92129 1.00715 0.91500 1.62203 1.58364 1.03582 1.02682 1.22058 0.97929 0.95871 0.90507 1.21600 1.00047 0.96575 0.96737 1.21466 0.96826 0.94556 1.01448 1.18599 0.94658 0.92528 0.90945 0.98491 1.21560 1.24321 1.04113 1.07555 0.93366 1.25718 0.95820 1.01383 0.95561 1.70042 1.34893 1.38375 1.12124 0.85571 0.78560 0.79917 0.77994 1.19393 1.20499 1.20385 1.21954 0.94577 0.89415 0.98670 0.93658 0.89391 0.92173 0.88978 0.92639 0.92459 0.89151 0.92685 0.90956 0.93573 0.91998 0.88434 0.90415 0.95594 0.88965 0.91248 0.92942 0.96255 0.92349 0.93037 0.92904 0.96582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 113.37 1.25 1.66 16 2 O -0.42 -9.93 10.67 -144.34 -1.54 -11.47 16 3 C 0.06 1.00 6.32 71.98 0.45 1.45 16 4 C 0.06 1.02 6.32 71.98 0.45 1.48 16 5 O -0.41 -10.99 10.31 -144.34 -1.49 -12.48 16 6 C 0.07 1.64 5.94 71.98 0.43 2.07 16 7 C -0.15 -4.26 4.88 30.59 0.15 -4.11 16 8 C 0.06 1.74 5.36 86.30 0.46 2.20 16 9 N -0.55 -19.96 4.86 -896.41 -4.35 -24.32 16 10 C 0.06 2.18 5.05 86.33 0.44 2.62 16 11 C -0.11 -4.42 6.09 30.65 0.19 -4.23 16 12 C -0.10 -5.23 5.02 30.67 0.15 -5.08 16 13 C 0.05 2.74 2.26 -11.49 -0.03 2.71 16 14 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 15 C -0.54 -31.09 8.57 25.60 0.22 -30.87 16 16 H 0.05 2.77 7.74 -2.91 -0.02 2.74 16 17 C 0.01 0.79 5.30 84.65 0.45 1.24 16 18 N -0.91 -54.51 11.35 21.45 0.24 -54.26 16 19 Si 0.95 45.15 29.54 68.60 2.03 47.18 16 20 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 21 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 22 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 23 C 0.08 3.62 4.06 86.32 0.35 3.97 16 24 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.05 1.59 6.51 -2.39 -0.02 1.57 16 34 H 0.06 1.83 6.68 -2.39 -0.02 1.81 16 35 H 0.10 2.15 8.06 -2.39 -0.02 2.13 16 36 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.03 0.90 6.75 -2.39 -0.02 0.88 16 38 H 0.09 2.54 8.06 -2.39 -0.02 2.52 16 39 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 40 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 41 H 0.02 0.96 8.14 -2.38 -0.02 0.94 16 42 H 0.06 3.27 6.15 -2.38 -0.01 3.26 16 43 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 44 H 0.05 2.35 8.12 -2.39 -0.02 2.33 16 45 H 0.02 0.74 6.61 -2.39 -0.02 0.72 16 Total: -1.00 -68.94 351.22 0.77 -68.16 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: 0.92 Total: 12.08 kcal Atomic # 6 Polarization: -29.85 SS G_CDS: 4.97 Total: -24.89 kcal Atomic # 7 Polarization: -74.47 SS G_CDS: -4.11 Total: -78.58 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -3.03 Total: -23.95 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -68.94 0.77 -68.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397725517.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.413 kcal (2) G-P(sol) polarization free energy of solvation -68.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds