Wall clock time and date at job start Mon Mar 30 2020 06:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42899 * 113.99814 * 2 1 4 4 C 1.53002 * 109.47175 * 179.97438 * 3 2 1 5 5 O 1.42898 * 109.46873 * 64.99806 * 4 3 2 6 6 C 1.42903 * 114.00250 * 179.97438 * 5 4 3 7 7 C 1.52994 * 109.47210 * 180.02562 * 6 5 4 8 8 C 1.53003 * 109.47262 * 180.02562 * 7 6 5 9 9 N 1.46892 * 109.47390 * 179.97438 * 8 7 6 10 10 C 1.46842 * 111.00192 * 293.95474 * 9 8 7 11 11 C 1.53039 * 109.52666 * 185.84212 * 10 9 8 12 12 C 1.53123 * 109.27546 * 300.81951 * 11 10 9 13 13 C 1.53120 * 109.21163 * 57.62218 * 12 11 10 14 14 H 1.09000 * 109.50719 * 62.32149 * 13 12 11 15 15 C 1.50705 * 109.50009 * 182.43636 * 13 12 11 16 16 H 1.08003 * 119.99487 * 120.00018 * 15 13 12 17 17 C 1.37877 * 119.99919 * 299.99707 * 15 13 12 18 18 N 1.31505 * 120.00221 * 0.02562 * 17 15 13 19 19 Si 1.86803 * 119.99678 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47392 * 60.00109 * 19 17 15 21 21 H 1.48497 * 109.46878 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.47180 * 300.00067 * 19 17 15 23 23 C 1.46848 * 110.99938 * 58.16403 * 9 8 7 24 24 H 1.08993 * 109.47886 * 300.00183 * 1 2 3 25 25 H 1.09006 * 109.46865 * 60.00623 * 1 2 3 26 26 H 1.08999 * 109.47170 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47275 * 60.00040 * 3 2 1 28 28 H 1.09000 * 109.47208 * 299.99652 * 3 2 1 29 29 H 1.09001 * 109.47127 * 305.00230 * 4 3 2 30 30 H 1.08997 * 109.47224 * 184.99539 * 4 3 2 31 31 H 1.08992 * 109.46808 * 60.00021 * 6 5 4 32 32 H 1.09004 * 109.46913 * 300.00555 * 6 5 4 33 33 H 1.09001 * 109.47256 * 60.00400 * 7 6 5 34 34 H 1.08991 * 109.47606 * 299.99838 * 7 6 5 35 35 H 1.08997 * 109.47211 * 59.99509 * 8 7 6 36 36 H 1.09004 * 109.46865 * 300.00315 * 8 7 6 37 37 H 1.08997 * 109.46434 * 65.82550 * 10 9 8 38 38 H 1.09006 * 109.45199 * 305.85056 * 10 9 8 39 39 H 1.08999 * 109.50420 * 180.88146 * 11 10 9 40 40 H 1.09002 * 109.53427 * 60.77649 * 11 10 9 41 41 H 1.09002 * 109.52319 * 177.56011 * 12 11 10 42 42 H 1.08995 * 109.52318 * 297.68693 * 12 11 10 43 43 H 0.96996 * 120.00390 * 179.97438 * 18 17 15 44 44 H 1.08999 * 109.46555 * 294.17605 * 23 9 8 45 45 H 1.08998 * 109.46337 * 54.15813 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 8 3.9657 0.5793 -1.2201 6 6 5.3822 0.4198 -1.3221 7 6 5.7266 -0.2339 -2.6618 8 6 7.2431 -0.4053 -2.7708 9 7 7.5738 -1.0334 -4.0568 10 6 7.0616 -2.4083 -4.1181 11 6 7.5474 -3.0782 -5.4054 12 6 7.0521 -2.2749 -6.6113 13 6 7.5580 -0.8340 -6.4990 14 1 8.6477 -0.8280 -6.5224 15 6 7.0248 -0.0225 -7.6515 16 1 6.4040 0.8408 -7.4624 17 6 7.3296 -0.3820 -8.9472 18 7 8.0852 -1.4334 -9.1774 19 14 6.6692 0.6245 -10.3757 20 1 7.1607 2.0214 -10.2660 21 1 7.1368 0.0337 -11.6553 22 1 5.1846 0.6179 -10.3413 23 6 7.0731 -0.2297 -5.1792 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 1.6885 1.8464 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.8507 0.5686 0.8427 30 1 3.9784 2.1766 0.0901 31 1 5.7362 -0.2120 -0.5075 32 1 5.8631 1.3960 -1.2602 33 1 5.3727 0.3982 -3.4762 34 1 5.2457 -1.2100 -2.7242 35 1 7.5968 -1.0375 -1.9564 36 1 7.7244 0.5707 -2.7082 37 1 5.9718 -2.3907 -4.1068 38 1 7.4248 -2.9697 -3.2572 39 1 7.1542 -4.0934 -5.4581 40 1 8.6370 -3.1091 -5.4115 41 1 7.4320 -2.7239 -7.5290 42 1 5.9623 -2.2780 -6.6283 43 1 8.2993 -1.6866 -10.0889 44 1 5.9832 -0.2223 -5.1629 45 1 7.4446 0.7910 -5.0892 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397725519.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:42 Heat of formation + Delta-G solvation = -104.873709 kcal Electronic energy + Delta-G solvation = -21270.462717 eV Core-core repulsion = 18094.588415 eV Total energy + Delta-G solvation = -3175.874302 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 2.53 seconds Orbital eigenvalues (eV) -38.83419 -38.34619 -37.29318 -34.37211 -32.45628 -30.98833 -29.82987 -29.44883 -26.52900 -25.13091 -24.88808 -22.76733 -22.61039 -21.43100 -20.67133 -18.22521 -17.16597 -16.98487 -16.32216 -15.81172 -15.61837 -15.53511 -14.86346 -14.48336 -14.18761 -14.05124 -13.71405 -13.18134 -12.91437 -12.67910 -12.44148 -12.26605 -11.87781 -11.80784 -11.66964 -11.45276 -11.23979 -10.96650 -10.91113 -10.83331 -10.62098 -10.35040 -9.98995 -9.94970 -9.77799 -9.63313 -9.40122 -8.97553 -8.65103 -8.25069 -7.57449 -5.92326 -3.98379 3.35780 3.40167 3.42830 3.49000 3.55301 4.44783 4.65311 4.74251 4.89526 4.98310 5.04127 5.07052 5.10367 5.22177 5.29731 5.37505 5.41858 5.44607 5.48293 5.53341 5.61550 5.76754 5.92252 5.93348 6.11146 6.18610 6.39510 6.42737 6.52150 6.59270 6.79516 6.83587 6.86781 7.04374 7.15823 7.28607 7.46723 7.72753 7.80562 7.88958 8.14693 8.23547 8.54134 9.05598 9.65594 11.13660 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.018811 B = 0.003493 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.134005 B = 8014.920986 C = 8723.515141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.062 3.938 4 C 0.063 3.937 5 O -0.381 6.381 6 C 0.068 3.932 7 C -0.158 4.158 8 C 0.060 3.940 9 N -0.534 5.534 10 C 0.060 3.940 11 C -0.118 4.118 12 C -0.111 4.111 13 C 0.055 3.945 14 H 0.033 0.967 15 C -0.514 4.514 16 H 0.053 0.947 17 C 0.063 3.937 18 N -0.889 5.889 19 Si 0.890 3.110 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.278 1.278 23 C 0.064 3.936 24 H 0.038 0.962 25 H 0.042 0.958 26 H 0.086 0.914 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.046 0.954 32 H 0.047 0.953 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.027 0.973 38 H 0.056 0.944 39 H 0.045 0.955 40 H 0.060 0.940 41 H 0.090 0.910 42 H 0.029 0.971 43 H 0.260 0.740 44 H 0.024 0.976 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.065 3.190 18.848 21.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C -0.014 4.014 4 C -0.014 4.014 5 O -0.300 6.300 6 C -0.009 4.009 7 C -0.198 4.198 8 C -0.069 4.069 9 N -0.257 5.257 10 C -0.068 4.068 11 C -0.156 4.156 12 C -0.149 4.149 13 C 0.036 3.964 14 H 0.051 0.949 15 C -0.553 4.553 16 H 0.071 0.929 17 C -0.138 4.138 18 N -0.528 5.528 19 Si 0.718 3.282 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.204 1.204 23 C -0.063 4.063 24 H 0.057 0.943 25 H 0.060 0.940 26 H 0.104 0.896 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.045 0.955 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.078 0.922 41 H 0.109 0.891 42 H 0.048 0.952 43 H 0.070 0.930 44 H 0.043 0.957 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.471 2.831 18.494 20.538 hybrid contribution -1.383 0.929 -0.483 1.734 sum -9.854 3.759 18.012 20.873 Atomic orbital electron populations 1.22746 0.81137 1.02883 0.99809 1.87975 1.19544 1.27321 1.95350 1.22574 0.92586 0.85500 1.00768 1.22475 0.93228 0.97494 0.88182 1.87986 1.22662 1.81894 1.37446 1.22477 0.80938 0.99167 0.98284 1.22281 0.99089 1.01930 0.96458 1.22096 0.91824 0.99922 0.93066 1.62268 1.59181 1.02483 1.01781 1.22056 0.96797 0.89523 0.98440 1.21680 1.00948 0.97558 0.95379 1.21653 0.98042 0.98038 0.97178 1.18663 0.96883 0.91779 0.89096 0.94907 1.21126 1.31387 1.11942 0.90861 0.92921 1.24929 0.95066 0.95136 0.98700 1.69877 1.37180 1.25453 1.20280 0.86697 0.79275 0.80474 0.81755 1.20321 1.21346 1.20387 1.22342 0.96530 0.96011 0.91395 0.94294 0.93951 0.89571 0.92001 0.92320 0.92637 0.91911 0.93546 0.93467 0.90507 0.91121 0.91507 0.91062 0.95472 0.92542 0.93591 0.92169 0.89144 0.95182 0.93041 0.95734 0.92415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.38 -4.55 10.67 -40.09 -0.43 -4.98 16 3 C 0.06 0.60 6.32 37.16 0.23 0.83 16 4 C 0.06 0.64 6.32 37.16 0.23 0.88 16 5 O -0.38 -5.33 10.31 -40.09 -0.41 -5.74 16 6 C 0.07 0.85 5.94 37.15 0.22 1.07 16 7 C -0.16 -2.35 4.89 -26.73 -0.13 -2.48 16 8 C 0.06 0.90 5.36 -3.83 -0.02 0.88 16 9 N -0.53 -10.09 4.86 -234.67 -1.14 -11.23 16 10 C 0.06 1.09 5.05 -3.84 -0.02 1.07 16 11 C -0.12 -2.38 6.10 -26.65 -0.16 -2.54 16 12 C -0.11 -2.70 5.02 -26.61 -0.13 -2.83 16 13 C 0.05 1.40 2.27 -91.68 -0.21 1.19 16 14 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 15 C -0.51 -14.37 8.57 -34.44 -0.30 -14.66 16 16 H 0.05 1.45 7.75 -52.48 -0.41 1.04 16 17 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 18 N -0.89 -25.75 11.35 55.43 0.63 -25.12 16 19 Si 0.89 21.57 29.54 -169.99 -5.02 16.54 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 C 0.06 1.39 4.06 -3.83 -0.02 1.37 16 24 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 25 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.08 1.28 6.51 -51.93 -0.34 0.94 16 34 H 0.07 1.12 6.68 -51.93 -0.35 0.78 16 35 H 0.07 0.89 8.06 -51.93 -0.42 0.47 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.03 0.50 6.75 -51.93 -0.35 0.15 16 38 H 0.06 0.90 8.06 -51.93 -0.42 0.49 16 39 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 41 H 0.09 2.44 6.15 -51.93 -0.32 2.12 16 42 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 44 H 0.02 0.54 6.61 -51.93 -0.34 0.20 16 45 H 0.06 1.24 8.12 -51.93 -0.42 0.82 16 LS Contribution 351.22 15.07 5.29 5.29 Total: -1.00 -30.72 351.22 -8.77 -39.49 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -8.42 Total: -2.09 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: 0.72 Total: -12.18 kcal Atomic # 7 Polarization: -35.84 SS G_CDS: -0.51 Total: -36.35 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: -0.84 Total: -10.72 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.72 -8.77 -39.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397725519.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.381 kcal (2) G-P(sol) polarization free energy of solvation -30.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.53 seconds