Wall clock time and date at job start Mon Mar 30 2020 06:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42899 * 113.99814 * 2 1 4 4 C 1.53002 * 109.47175 * 179.97438 * 3 2 1 5 5 O 1.42898 * 109.46873 * 64.99806 * 4 3 2 6 6 C 1.42903 * 114.00250 * 179.97438 * 5 4 3 7 7 C 1.52994 * 109.47210 * 180.02562 * 6 5 4 8 8 C 1.53003 * 109.47262 * 180.02562 * 7 6 5 9 9 N 1.46892 * 109.47390 * 179.97438 * 8 7 6 10 10 C 1.46842 * 111.00192 * 293.95474 * 9 8 7 11 11 C 1.53039 * 109.52666 * 185.84212 * 10 9 8 12 12 C 1.53123 * 109.27546 * 300.81951 * 11 10 9 13 13 C 1.53120 * 109.21163 * 57.62218 * 12 11 10 14 14 H 1.09000 * 109.50719 * 62.32149 * 13 12 11 15 15 C 1.50705 * 109.50009 * 182.43636 * 13 12 11 16 16 H 1.08003 * 119.99487 * 120.00018 * 15 13 12 17 17 C 1.37877 * 119.99919 * 299.99707 * 15 13 12 18 18 N 1.31505 * 120.00221 * 0.02562 * 17 15 13 19 19 Si 1.86803 * 119.99678 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47392 * 60.00109 * 19 17 15 21 21 H 1.48497 * 109.46878 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.47180 * 300.00067 * 19 17 15 23 23 C 1.46848 * 110.99938 * 58.16403 * 9 8 7 24 24 H 1.08993 * 109.47886 * 300.00183 * 1 2 3 25 25 H 1.09006 * 109.46865 * 60.00623 * 1 2 3 26 26 H 1.08999 * 109.47170 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47275 * 60.00040 * 3 2 1 28 28 H 1.09000 * 109.47208 * 299.99652 * 3 2 1 29 29 H 1.09001 * 109.47127 * 305.00230 * 4 3 2 30 30 H 1.08997 * 109.47224 * 184.99539 * 4 3 2 31 31 H 1.08992 * 109.46808 * 60.00021 * 6 5 4 32 32 H 1.09004 * 109.46913 * 300.00555 * 6 5 4 33 33 H 1.09001 * 109.47256 * 60.00400 * 7 6 5 34 34 H 1.08991 * 109.47606 * 299.99838 * 7 6 5 35 35 H 1.08997 * 109.47211 * 59.99509 * 8 7 6 36 36 H 1.09004 * 109.46865 * 300.00315 * 8 7 6 37 37 H 1.08997 * 109.46434 * 65.82550 * 10 9 8 38 38 H 1.09006 * 109.45199 * 305.85056 * 10 9 8 39 39 H 1.08999 * 109.50420 * 180.88146 * 11 10 9 40 40 H 1.09002 * 109.53427 * 60.77649 * 11 10 9 41 41 H 1.09002 * 109.52319 * 177.56011 * 12 11 10 42 42 H 1.08995 * 109.52318 * 297.68693 * 12 11 10 43 43 H 0.96996 * 120.00390 * 179.97438 * 18 17 15 44 44 H 1.08999 * 109.46555 * 294.17605 * 23 9 8 45 45 H 1.08998 * 109.46337 * 54.15813 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 8 3.9657 0.5793 -1.2201 6 6 5.3822 0.4198 -1.3221 7 6 5.7266 -0.2339 -2.6618 8 6 7.2431 -0.4053 -2.7708 9 7 7.5738 -1.0334 -4.0568 10 6 7.0616 -2.4083 -4.1181 11 6 7.5474 -3.0782 -5.4054 12 6 7.0521 -2.2749 -6.6113 13 6 7.5580 -0.8340 -6.4990 14 1 8.6477 -0.8280 -6.5224 15 6 7.0248 -0.0225 -7.6515 16 1 6.4040 0.8408 -7.4624 17 6 7.3296 -0.3820 -8.9472 18 7 8.0852 -1.4334 -9.1774 19 14 6.6692 0.6245 -10.3757 20 1 7.1607 2.0214 -10.2660 21 1 7.1368 0.0337 -11.6553 22 1 5.1846 0.6179 -10.3413 23 6 7.0731 -0.2297 -5.1792 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 1.6885 1.8464 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.8507 0.5686 0.8427 30 1 3.9784 2.1766 0.0901 31 1 5.7362 -0.2120 -0.5075 32 1 5.8631 1.3960 -1.2602 33 1 5.3727 0.3982 -3.4762 34 1 5.2457 -1.2100 -2.7242 35 1 7.5968 -1.0375 -1.9564 36 1 7.7244 0.5707 -2.7082 37 1 5.9718 -2.3907 -4.1068 38 1 7.4248 -2.9697 -3.2572 39 1 7.1542 -4.0934 -5.4581 40 1 8.6370 -3.1091 -5.4115 41 1 7.4320 -2.7239 -7.5290 42 1 5.9623 -2.2780 -6.6283 43 1 8.2993 -1.6866 -10.0889 44 1 5.9832 -0.2223 -5.1629 45 1 7.4446 0.7910 -5.0892 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397725519.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:40 Heat of formation + Delta-G solvation = -125.468756 kcal Electronic energy + Delta-G solvation = -21271.355786 eV Core-core repulsion = 18094.588415 eV Total energy + Delta-G solvation = -3176.767370 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.17759 -39.36959 -38.20405 -36.06181 -34.20679 -32.16998 -31.67829 -30.52850 -27.22065 -26.94053 -26.42429 -23.94964 -23.52180 -23.16978 -22.17327 -19.94745 -18.48136 -17.92641 -17.76677 -16.91493 -16.66542 -16.40861 -16.36528 -15.90380 -15.76070 -15.30245 -14.95044 -14.75339 -14.37591 -14.12686 -13.87316 -13.49707 -13.20536 -13.08633 -12.85748 -12.76038 -12.65606 -12.51434 -12.47127 -12.09956 -11.93765 -11.90255 -11.71616 -11.45395 -11.36875 -10.85034 -10.66796 -10.65635 -10.54611 -10.37040 -9.09420 -8.07393 -6.21766 1.41172 1.42855 1.50451 2.43144 2.67461 2.85732 3.18515 3.19309 3.94102 4.00005 4.15147 4.20588 4.25390 4.27803 4.31926 4.40182 4.44956 4.47523 4.50759 4.54496 4.58001 4.63303 4.67172 4.74951 4.76464 4.80902 4.84085 4.92749 4.96677 5.09076 5.14720 5.20138 5.30573 5.41475 5.53536 5.63737 5.97512 6.13004 6.17151 6.21691 6.30935 6.41212 6.46951 6.90790 7.45928 8.97158 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.018811 B = 0.003493 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.134005 B = 8014.920986 C = 8723.515141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.417 6.417 3 C 0.058 3.942 4 C 0.056 3.944 5 O -0.414 6.414 6 C 0.072 3.928 7 C -0.150 4.150 8 C 0.063 3.937 9 N -0.545 5.545 10 C 0.064 3.936 11 C -0.112 4.112 12 C -0.105 4.105 13 C 0.052 3.948 14 H -0.004 1.004 15 C -0.539 4.539 16 H 0.050 0.950 17 C 0.014 3.986 18 N -0.916 5.916 19 Si 0.954 3.046 20 H -0.270 1.270 21 H -0.283 1.283 22 H -0.273 1.273 23 C 0.081 3.919 24 H 0.059 0.941 25 H 0.043 0.957 26 H 0.090 0.910 27 H 0.092 0.908 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.086 0.914 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.050 0.950 34 H 0.057 0.943 35 H 0.094 0.906 36 H 0.081 0.919 37 H 0.025 0.975 38 H 0.090 0.910 39 H 0.068 0.932 40 H 0.052 0.948 41 H 0.058 0.942 42 H 0.018 0.982 43 H 0.261 0.739 44 H 0.017 0.983 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.657 3.802 20.790 23.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.337 6.337 3 C -0.019 4.019 4 C -0.020 4.020 5 O -0.334 6.334 6 C -0.004 4.004 7 C -0.190 4.190 8 C -0.065 4.065 9 N -0.268 5.268 10 C -0.064 4.064 11 C -0.150 4.150 12 C -0.143 4.143 13 C 0.033 3.967 14 H 0.015 0.985 15 C -0.577 4.577 16 H 0.068 0.932 17 C -0.185 4.185 18 N -0.555 5.555 19 Si 0.780 3.220 20 H -0.195 1.195 21 H -0.208 1.208 22 H -0.198 1.198 23 C -0.046 4.046 24 H 0.078 0.922 25 H 0.061 0.939 26 H 0.109 0.891 27 H 0.110 0.890 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.104 0.896 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.112 0.888 36 H 0.099 0.901 37 H 0.043 0.957 38 H 0.108 0.892 39 H 0.087 0.913 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.037 0.963 43 H 0.070 0.930 44 H 0.035 0.965 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.069 3.451 20.460 22.645 hybrid contribution -1.209 0.735 -1.053 1.764 sum -10.279 4.186 19.407 22.357 Atomic orbital electron populations 1.22903 0.79673 1.03629 1.00850 1.87919 1.21370 1.28804 1.95597 1.22746 0.92259 0.84950 1.01899 1.22739 0.93761 0.98574 0.86914 1.87939 1.23313 1.82619 1.39497 1.22430 0.80787 1.00130 0.97097 1.22137 0.98668 1.00907 0.97259 1.22180 0.92057 1.00760 0.91523 1.62199 1.59393 1.02708 1.02523 1.22050 0.96696 0.89300 0.98328 1.21600 1.00417 0.98310 0.94630 1.21468 0.97040 0.97879 0.97922 1.18595 0.94498 0.92749 0.90850 0.98537 1.21509 1.31642 1.12333 0.92228 0.93193 1.25726 0.95282 0.96186 1.01301 1.70023 1.38016 1.26674 1.20777 0.85676 0.78750 0.79138 0.78475 1.19521 1.20796 1.19819 1.21964 0.95759 0.95992 0.90910 0.92241 0.93872 0.89100 0.88977 0.92962 0.91988 0.89599 0.91759 0.91870 0.93130 0.92445 0.88751 0.90085 0.95684 0.89161 0.91340 0.92918 0.92351 0.96286 0.93029 0.96522 0.92657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.63 16 2 O -0.42 -9.45 10.67 -144.34 -1.54 -10.99 16 3 C 0.06 1.00 6.32 71.98 0.45 1.46 16 4 C 0.06 1.03 6.32 71.98 0.45 1.48 16 5 O -0.41 -11.00 10.31 -144.34 -1.49 -12.49 16 6 C 0.07 1.64 5.94 71.98 0.43 2.07 16 7 C -0.15 -4.25 4.89 30.59 0.15 -4.10 16 8 C 0.06 1.74 5.36 86.31 0.46 2.20 16 9 N -0.55 -19.96 4.86 -896.36 -4.36 -24.32 16 10 C 0.06 2.22 5.05 86.33 0.44 2.65 16 11 C -0.11 -4.46 6.10 30.65 0.19 -4.27 16 12 C -0.10 -5.25 5.02 30.68 0.15 -5.09 16 13 C 0.05 2.74 2.27 -11.48 -0.03 2.72 16 14 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 15 C -0.54 -30.92 8.57 25.60 0.22 -30.70 16 16 H 0.05 2.81 7.75 -2.91 -0.02 2.79 16 17 C 0.01 0.79 5.30 84.66 0.45 1.24 16 18 N -0.92 -54.49 11.35 21.45 0.24 -54.24 16 19 Si 0.95 44.77 29.54 68.60 2.03 46.79 16 20 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 21 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 22 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 23 C 0.08 3.57 4.06 86.33 0.35 3.93 16 24 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.04 0.62 8.14 -2.38 -0.02 0.60 16 26 H 0.09 1.22 8.14 -2.39 -0.02 1.21 16 27 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 33 H 0.05 1.68 6.51 -2.39 -0.02 1.67 16 34 H 0.06 1.76 6.68 -2.39 -0.02 1.75 16 35 H 0.09 2.14 8.06 -2.39 -0.02 2.13 16 36 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 37 H 0.02 0.89 6.75 -2.39 -0.02 0.87 16 38 H 0.09 2.57 8.06 -2.38 -0.02 2.55 16 39 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 40 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.06 3.28 6.15 -2.39 -0.01 3.26 16 42 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 44 H 0.02 0.75 6.61 -2.39 -0.02 0.74 16 45 H 0.05 2.41 8.12 -2.39 -0.02 2.39 16 Total: -1.00 -68.10 351.22 0.77 -67.32 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: 0.92 Total: 12.72 kcal Atomic # 6 Polarization: -29.76 SS G_CDS: 4.97 Total: -24.79 kcal Atomic # 7 Polarization: -74.45 SS G_CDS: -4.11 Total: -78.56 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: -3.03 Total: -23.48 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.79 kcal Total: -68.10 0.77 -67.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397725519.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.145 kcal (2) G-P(sol) polarization free energy of solvation -68.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds