Wall clock time and date at job start Mon Mar 30 2020 06:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 113.99966 * 2 1 4 4 C 1.52998 * 109.47199 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.46816 * 302.79037 * 4 3 2 6 6 O 1.42897 * 109.47276 * 56.91693 * 5 4 3 7 7 C 1.42899 * 114.00368 * 179.97438 * 6 5 4 8 8 N 1.46899 * 109.47055 * 62.79280 * 4 3 2 9 9 C 1.46846 * 110.99912 * 55.57993 * 8 4 3 10 10 C 1.53041 * 109.51169 * 185.84215 * 9 8 4 11 11 C 1.53116 * 109.27920 * 300.80746 * 10 9 8 12 12 C 1.53005 * 109.52168 * 177.57290 * 11 10 9 13 13 C 1.50703 * 109.47194 * 65.32266 * 12 11 10 14 14 H 1.07996 * 119.99631 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99790 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00076 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 119.99820 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47294 * 60.00697 * 17 15 13 19 19 H 1.48504 * 109.47271 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.47507 * 300.00464 * 17 15 13 21 21 C 1.53114 * 109.15436 * 57.66723 * 11 10 9 22 22 C 1.46849 * 110.99722 * 179.79011 * 8 4 3 23 23 H 1.09003 * 109.47045 * 300.00142 * 1 2 3 24 24 H 1.08995 * 109.47478 * 59.99641 * 1 2 3 25 25 H 1.09001 * 109.47316 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.47305 * 60.00071 * 3 2 1 27 27 H 1.09001 * 109.47238 * 300.00437 * 3 2 1 28 28 H 1.09005 * 109.46957 * 182.79384 * 4 3 2 29 29 H 1.09009 * 109.47154 * 176.91480 * 5 4 3 30 30 H 1.09002 * 109.47347 * 296.91373 * 5 4 3 31 31 H 1.09000 * 109.47026 * 299.99540 * 7 6 5 32 32 H 1.08999 * 109.47129 * 59.99871 * 7 6 5 33 33 H 1.09004 * 109.47098 * 180.02562 * 7 6 5 34 34 H 1.08998 * 109.46089 * 305.85377 * 9 8 4 35 35 H 1.09004 * 109.46168 * 65.83382 * 9 8 4 36 36 H 1.08997 * 109.49870 * 60.75921 * 10 9 8 37 37 H 1.08997 * 109.49754 * 180.87471 * 10 9 8 38 38 H 1.09008 * 109.52806 * 297.76272 * 11 10 9 39 39 H 1.09001 * 109.46746 * 185.32480 * 12 11 10 40 40 H 1.08998 * 109.46609 * 305.32463 * 12 11 10 41 41 H 0.96998 * 119.99878 * 179.97438 * 16 15 13 42 42 H 1.08999 * 109.50338 * 182.39723 * 21 11 10 43 43 H 1.09005 * 109.53580 * 62.30613 * 21 11 10 44 44 H 1.08999 * 109.45976 * 294.17741 * 22 8 4 45 45 H 1.08992 * 109.46229 * 54.15292 * 22 8 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 3.9826 0.3654 1.2117 6 8 3.3451 -0.9131 1.1840 7 6 3.6968 -1.7619 2.2785 8 7 3.9731 0.5150 -1.2327 9 6 3.4713 1.2178 -2.4204 10 6 3.8216 0.4151 -3.6754 11 6 5.3414 0.2494 -3.7617 12 6 5.6942 -0.6038 -4.9817 13 6 5.3091 0.1333 -6.2385 14 1 4.8581 1.1124 -6.1735 15 6 5.5334 -0.4421 -7.4713 16 7 6.0829 -1.6343 -7.5503 17 14 5.0553 0.4711 -9.0290 18 1 5.7930 1.7582 -9.0945 19 1 5.3979 -0.3569 -10.2132 20 1 3.5946 0.7379 -9.0180 21 6 5.8443 -0.4415 -2.4912 22 6 5.4354 0.3857 -1.2704 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 1.6886 1.8464 0.8900 27 1 1.6885 1.8464 -0.8899 28 1 3.9787 2.1793 0.0494 29 1 5.0642 0.2328 1.1817 30 1 3.7060 0.8896 2.1265 31 1 4.7723 -1.9387 2.2702 32 1 3.4146 -1.2821 3.2156 33 1 3.1720 -2.7127 2.1842 34 1 2.3890 1.3255 -2.3484 35 1 3.9312 2.2043 -2.4800 36 1 3.3508 -0.5665 -3.6227 37 1 3.4627 0.9447 -4.5579 38 1 5.8101 1.2293 -3.8534 39 1 6.7663 -0.8003 -4.9898 40 1 5.1520 -1.5481 -4.9337 41 1 6.2404 -2.0392 -8.4175 42 1 6.9305 -0.5241 -2.5276 43 1 5.4059 -1.4369 -2.4197 44 1 5.8859 1.3761 -1.3353 45 1 5.7795 -0.1110 -0.3634 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399442385.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:53 Heat of formation + Delta-G solvation = -91.660168 kcal Electronic energy + Delta-G solvation = -22393.862181 eV Core-core repulsion = 19218.560861 eV Total energy + Delta-G solvation = -3175.301320 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.46769 -37.47677 -37.07232 -34.58695 -32.47471 -30.44420 -30.36110 -27.32704 -27.18952 -26.01636 -25.07656 -23.83840 -22.13076 -21.21234 -19.92994 -18.83259 -16.92465 -16.56695 -16.16344 -15.91312 -15.48509 -14.84428 -14.75094 -14.53364 -14.31870 -14.02048 -13.47379 -13.23820 -12.92305 -12.55585 -12.50911 -12.45145 -11.94517 -11.61519 -11.46165 -11.26957 -11.20598 -11.01054 -10.76428 -10.65293 -10.52949 -10.43587 -10.16381 -9.81219 -9.49596 -9.45839 -9.27261 -8.93880 -8.77918 -8.25721 -7.87296 -5.90859 -3.92037 3.37766 3.42228 3.44410 3.76407 4.01460 4.16395 4.52676 4.87118 4.90775 5.19681 5.24035 5.30430 5.37334 5.39953 5.44085 5.45025 5.47678 5.54543 5.57089 5.64096 5.65601 5.74588 5.75288 5.78371 5.82179 6.01251 6.09376 6.24299 6.36960 6.55925 6.71674 6.78983 7.09919 7.21384 7.31135 7.33455 7.35326 7.53419 7.57239 7.78201 7.96621 8.10945 8.53887 9.14441 9.70865 11.20538 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.025991 B = 0.004231 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.027102 B = 6616.501118 C = 7075.228125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.339 6.339 3 C 0.069 3.931 4 C 0.085 3.915 5 C 0.071 3.929 6 O -0.339 6.339 7 C 0.029 3.971 8 N -0.510 5.510 9 C 0.054 3.946 10 C -0.097 4.097 11 C -0.081 4.081 12 C 0.028 3.972 13 C -0.513 4.513 14 H 0.054 0.946 15 C 0.056 3.944 16 N -0.897 5.897 17 Si 0.888 3.112 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.277 1.277 21 C -0.109 4.109 22 C 0.057 3.943 23 H 0.029 0.971 24 H 0.034 0.966 25 H 0.082 0.918 26 H 0.042 0.958 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.048 0.952 30 H 0.042 0.958 31 H 0.033 0.967 32 H 0.029 0.971 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.022 0.978 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.049 0.951 39 H 0.013 0.987 40 H 0.017 0.983 41 H 0.259 0.741 42 H 0.057 0.943 43 H 0.067 0.933 44 H 0.023 0.977 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.009 5.340 19.956 21.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.257 6.257 3 C -0.008 4.008 4 C -0.024 4.024 5 C -0.006 4.006 6 O -0.256 6.256 7 C -0.068 4.068 8 N -0.236 5.236 9 C -0.073 4.073 10 C -0.135 4.135 11 C -0.099 4.099 12 C -0.008 4.008 13 C -0.552 4.552 14 H 0.072 0.928 15 C -0.145 4.145 16 N -0.536 5.536 17 Si 0.716 3.284 18 H -0.204 1.204 19 H -0.214 1.214 20 H -0.203 1.203 21 C -0.147 4.147 22 C -0.070 4.070 23 H 0.048 0.952 24 H 0.052 0.948 25 H 0.100 0.900 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.051 0.949 32 H 0.048 0.952 33 H 0.100 0.900 34 H 0.086 0.914 35 H 0.040 0.960 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.067 0.933 39 H 0.031 0.969 40 H 0.035 0.965 41 H 0.069 0.931 42 H 0.076 0.924 43 H 0.085 0.915 44 H 0.041 0.959 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.167 4.507 19.673 21.418 hybrid contribution 0.121 1.629 -0.648 1.757 sum -7.046 6.135 19.025 21.195 Atomic orbital electron populations 1.22694 0.82991 1.02310 0.98843 1.88283 1.17301 1.25199 1.94883 1.22509 0.92696 0.86284 0.99313 1.21769 0.94250 0.95100 0.91267 1.22483 0.96309 0.85869 0.95943 1.88287 1.67552 1.24712 1.45078 1.22691 0.99275 0.95186 0.89676 1.61855 1.10828 1.50727 1.00159 1.22279 0.99185 0.94914 0.90944 1.21509 0.97103 1.00267 0.94576 1.21227 0.94453 0.99042 0.95199 1.19108 0.96452 0.94765 0.90524 1.21227 1.39880 1.02964 0.91089 0.92825 1.25010 0.95485 0.94947 0.99021 1.69958 1.43947 1.15216 1.24499 0.86724 0.78941 0.79708 0.82996 1.20411 1.21395 1.20317 1.21653 0.99614 0.99664 0.93784 1.22172 0.86996 0.98382 0.99459 0.95196 0.94781 0.89969 0.93946 0.93181 0.92189 0.93363 0.93966 0.94855 0.95197 0.89989 0.91395 0.95962 0.91698 0.91166 0.93265 0.96871 0.96471 0.93097 0.92405 0.91454 0.95862 0.91562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.42 16 2 O -0.34 -4.79 8.36 -58.08 -0.49 -5.28 16 3 C 0.07 0.84 5.16 37.16 0.19 1.03 16 4 C 0.08 1.07 2.34 -67.72 -0.16 0.92 16 5 C 0.07 0.84 5.31 37.16 0.20 1.04 16 6 O -0.34 -4.71 8.36 -58.08 -0.49 -5.20 16 7 C 0.03 0.30 11.01 101.05 1.11 1.42 16 8 N -0.51 -7.96 4.36 -226.70 -0.99 -8.95 16 9 C 0.05 0.88 5.13 -3.83 -0.02 0.86 16 10 C -0.10 -1.91 5.15 -26.65 -0.14 -2.05 16 11 C -0.08 -1.71 2.20 -90.50 -0.20 -1.91 16 12 C 0.03 0.75 4.45 -27.88 -0.12 0.63 16 13 C -0.51 -14.60 8.44 -34.44 -0.29 -14.89 16 14 H 0.05 1.48 7.08 -52.49 -0.37 1.11 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.90 -27.44 13.29 55.43 0.74 -26.70 16 17 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 21 C -0.11 -2.01 5.38 -26.66 -0.14 -2.15 16 22 C 0.06 0.89 5.23 -3.84 -0.02 0.87 16 23 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 24 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 25 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.04 0.43 8.14 -51.92 -0.42 0.00 16 27 H 0.05 0.59 6.05 -51.93 -0.31 0.28 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.55 6.13 -51.92 -0.32 0.23 16 30 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.07 1.04 5.84 -51.93 -0.30 0.73 16 35 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 37 H 0.07 1.46 7.05 -51.93 -0.37 1.09 16 38 H 0.05 1.06 8.14 -51.92 -0.42 0.63 16 39 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 42 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 44 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.07 0.94 5.95 -51.93 -0.31 0.63 16 LS Contribution 346.34 15.07 5.22 5.22 Total: -1.00 -31.96 346.34 -7.91 -39.86 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -8.30 Total: -4.61 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: 1.42 Total: -11.29 kcal Atomic # 7 Polarization: -35.40 SS G_CDS: -0.25 Total: -35.65 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: -0.97 Total: -10.48 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.96 -7.91 -39.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399442385.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.795 kcal (2) G-P(sol) polarization free energy of solvation -31.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds