Wall clock time and date at job start Mon Mar 30 2020 06:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 113.99966 * 2 1 4 4 C 1.52998 * 109.47199 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.46816 * 302.79037 * 4 3 2 6 6 O 1.42897 * 109.47276 * 56.91693 * 5 4 3 7 7 C 1.42899 * 114.00368 * 179.97438 * 6 5 4 8 8 N 1.46899 * 109.47055 * 62.79280 * 4 3 2 9 9 C 1.46846 * 110.99912 * 55.57993 * 8 4 3 10 10 C 1.53041 * 109.51169 * 185.84215 * 9 8 4 11 11 C 1.53116 * 109.27920 * 300.80746 * 10 9 8 12 12 C 1.53005 * 109.52168 * 177.57290 * 11 10 9 13 13 C 1.50703 * 109.47194 * 65.32266 * 12 11 10 14 14 H 1.07996 * 119.99631 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99790 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00076 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 119.99820 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47294 * 60.00697 * 17 15 13 19 19 H 1.48504 * 109.47271 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.47507 * 300.00464 * 17 15 13 21 21 C 1.53114 * 109.15436 * 57.66723 * 11 10 9 22 22 C 1.46849 * 110.99722 * 179.79011 * 8 4 3 23 23 H 1.09003 * 109.47045 * 300.00142 * 1 2 3 24 24 H 1.08995 * 109.47478 * 59.99641 * 1 2 3 25 25 H 1.09001 * 109.47316 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.47305 * 60.00071 * 3 2 1 27 27 H 1.09001 * 109.47238 * 300.00437 * 3 2 1 28 28 H 1.09005 * 109.46957 * 182.79384 * 4 3 2 29 29 H 1.09009 * 109.47154 * 176.91480 * 5 4 3 30 30 H 1.09002 * 109.47347 * 296.91373 * 5 4 3 31 31 H 1.09000 * 109.47026 * 299.99540 * 7 6 5 32 32 H 1.08999 * 109.47129 * 59.99871 * 7 6 5 33 33 H 1.09004 * 109.47098 * 180.02562 * 7 6 5 34 34 H 1.08998 * 109.46089 * 305.85377 * 9 8 4 35 35 H 1.09004 * 109.46168 * 65.83382 * 9 8 4 36 36 H 1.08997 * 109.49870 * 60.75921 * 10 9 8 37 37 H 1.08997 * 109.49754 * 180.87471 * 10 9 8 38 38 H 1.09008 * 109.52806 * 297.76272 * 11 10 9 39 39 H 1.09001 * 109.46746 * 185.32480 * 12 11 10 40 40 H 1.08998 * 109.46609 * 305.32463 * 12 11 10 41 41 H 0.96998 * 119.99878 * 179.97438 * 16 15 13 42 42 H 1.08999 * 109.50338 * 182.39723 * 21 11 10 43 43 H 1.09005 * 109.53580 * 62.30613 * 21 11 10 44 44 H 1.08999 * 109.45976 * 294.17741 * 22 8 4 45 45 H 1.08992 * 109.46229 * 54.15292 * 22 8 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 3.9826 0.3654 1.2117 6 8 3.3451 -0.9131 1.1840 7 6 3.6968 -1.7619 2.2785 8 7 3.9731 0.5150 -1.2327 9 6 3.4713 1.2178 -2.4204 10 6 3.8216 0.4151 -3.6754 11 6 5.3414 0.2494 -3.7617 12 6 5.6942 -0.6038 -4.9817 13 6 5.3091 0.1333 -6.2385 14 1 4.8581 1.1124 -6.1735 15 6 5.5334 -0.4421 -7.4713 16 7 6.0829 -1.6343 -7.5503 17 14 5.0553 0.4711 -9.0290 18 1 5.7930 1.7582 -9.0945 19 1 5.3979 -0.3569 -10.2132 20 1 3.5946 0.7379 -9.0180 21 6 5.8443 -0.4415 -2.4912 22 6 5.4354 0.3857 -1.2704 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 1.6886 1.8464 0.8900 27 1 1.6885 1.8464 -0.8899 28 1 3.9787 2.1793 0.0494 29 1 5.0642 0.2328 1.1817 30 1 3.7060 0.8896 2.1265 31 1 4.7723 -1.9387 2.2702 32 1 3.4146 -1.2821 3.2156 33 1 3.1720 -2.7127 2.1842 34 1 2.3890 1.3255 -2.3484 35 1 3.9312 2.2043 -2.4800 36 1 3.3508 -0.5665 -3.6227 37 1 3.4627 0.9447 -4.5579 38 1 5.8101 1.2293 -3.8534 39 1 6.7663 -0.8003 -4.9898 40 1 5.1520 -1.5481 -4.9337 41 1 6.2404 -2.0392 -8.4175 42 1 6.9305 -0.5241 -2.5276 43 1 5.4059 -1.4369 -2.4197 44 1 5.8859 1.3761 -1.3353 45 1 5.7795 -0.1110 -0.3634 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399442385.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:52 Heat of formation + Delta-G solvation = -112.310404 kcal Electronic energy + Delta-G solvation = -22394.757643 eV Core-core repulsion = 19218.560861 eV Total energy + Delta-G solvation = -3176.196781 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.62192 -38.66938 -37.97651 -36.13540 -34.41360 -31.84725 -31.73563 -28.96236 -28.16546 -26.94908 -26.01427 -25.63504 -23.49570 -22.81127 -21.08605 -20.41235 -18.42095 -17.92873 -17.47317 -16.83730 -16.52559 -16.40359 -15.87180 -15.67917 -15.52889 -15.20983 -15.05019 -14.60837 -14.36670 -14.07013 -13.80930 -13.50482 -13.35907 -13.06388 -12.89692 -12.59423 -12.48643 -12.43664 -12.33202 -12.08107 -12.01478 -11.88794 -11.75505 -11.39041 -11.19762 -10.81064 -10.64670 -10.50206 -10.35747 -10.17370 -9.02497 -8.15366 -6.25352 1.39963 1.43344 1.50891 2.43136 2.81837 3.14808 3.16427 3.17821 3.95944 3.96918 4.03332 4.15135 4.20100 4.41471 4.42232 4.46100 4.53760 4.58283 4.59749 4.64744 4.68294 4.68534 4.71553 4.79106 4.81112 4.81756 4.89786 4.97179 4.98454 5.04880 5.12422 5.20583 5.40426 5.45132 5.47950 5.59488 5.83400 5.91487 6.25572 6.28600 6.33036 6.50492 6.66186 6.90572 7.42860 8.96605 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.025991 B = 0.004231 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.027102 B = 6616.501118 C = 7075.228125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.370 6.370 3 C 0.067 3.933 4 C 0.081 3.919 5 C 0.070 3.930 6 O -0.370 6.370 7 C 0.027 3.973 8 N -0.528 5.528 9 C 0.067 3.933 10 C -0.090 4.090 11 C -0.072 4.072 12 C 0.034 3.966 13 C -0.530 4.530 14 H 0.061 0.939 15 C -0.003 4.003 16 N -0.937 5.937 17 Si 0.962 3.038 18 H -0.266 1.266 19 H -0.285 1.285 20 H -0.267 1.267 21 C -0.104 4.104 22 C 0.067 3.933 23 H 0.048 0.952 24 H 0.036 0.964 25 H 0.081 0.919 26 H 0.067 0.933 27 H 0.049 0.951 28 H 0.083 0.917 29 H 0.051 0.949 30 H 0.066 0.934 31 H 0.037 0.963 32 H 0.047 0.953 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.035 0.965 36 H 0.040 0.960 37 H 0.055 0.945 38 H 0.051 0.949 39 H -0.015 1.015 40 H -0.017 1.017 41 H 0.262 0.738 42 H 0.060 0.940 43 H 0.046 0.954 44 H 0.036 0.964 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.757 7.500 21.325 23.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.288 6.288 3 C -0.010 4.010 4 C -0.027 4.027 5 C -0.007 4.007 6 O -0.289 6.289 7 C -0.070 4.070 8 N -0.254 5.254 9 C -0.061 4.061 10 C -0.128 4.128 11 C -0.091 4.091 12 C -0.003 4.003 13 C -0.568 4.568 14 H 0.079 0.921 15 C -0.200 4.200 16 N -0.577 5.577 17 Si 0.786 3.214 18 H -0.191 1.191 19 H -0.210 1.210 20 H -0.192 1.192 21 C -0.142 4.142 22 C -0.060 4.060 23 H 0.066 0.934 24 H 0.054 0.946 25 H 0.100 0.900 26 H 0.085 0.915 27 H 0.067 0.933 28 H 0.101 0.899 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.053 0.947 36 H 0.059 0.941 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.003 0.997 40 H 0.002 0.998 41 H 0.070 0.930 42 H 0.079 0.921 43 H 0.065 0.935 44 H 0.055 0.945 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.922 6.680 21.068 23.478 hybrid contribution 0.355 0.891 -1.040 1.415 sum -7.568 7.571 20.028 22.709 Atomic orbital electron populations 1.22784 0.81760 1.02678 0.99808 1.88242 1.18837 1.26588 1.95121 1.22612 0.92223 0.85761 1.00413 1.21960 0.94865 0.96022 0.89831 1.22581 0.96317 0.85370 0.96474 1.88246 1.68262 1.25823 1.46523 1.22782 0.99567 0.95002 0.89660 1.61769 1.10664 1.51866 1.01128 1.22075 1.00044 0.94475 0.89495 1.21367 0.95558 0.99501 0.96416 1.21072 0.95754 0.98070 0.94212 1.18998 0.94051 0.94206 0.93003 1.21621 1.39722 1.03374 0.92041 0.92073 1.25977 0.95296 0.95791 1.02926 1.70111 1.45143 1.17007 1.25489 0.85550 0.79070 0.78552 0.78179 1.19112 1.21035 1.19212 1.21555 0.99609 0.98969 0.94102 1.22047 0.87387 0.98451 0.98164 0.93351 0.94586 0.90033 0.91517 0.93266 0.89938 0.93102 0.91569 0.94429 0.93438 0.90103 0.90260 0.94736 0.94108 0.92617 0.93088 0.99659 0.99842 0.92974 0.92115 0.93471 0.94539 0.89858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 113.37 1.25 1.78 16 2 O -0.37 -9.81 8.36 -127.13 -1.06 -10.87 16 3 C 0.07 1.42 5.16 71.98 0.37 1.80 16 4 C 0.08 1.80 2.34 44.91 0.11 1.91 16 5 C 0.07 1.44 5.31 71.98 0.38 1.82 16 6 O -0.37 -9.61 8.36 -127.13 -1.06 -10.68 16 7 C 0.03 0.51 11.01 113.37 1.25 1.76 16 8 N -0.53 -15.52 4.36 -871.13 -3.80 -19.32 16 9 C 0.07 2.06 5.13 86.33 0.44 2.50 16 10 C -0.09 -3.62 5.15 30.65 0.16 -3.47 16 11 C -0.07 -3.13 2.20 -10.72 -0.02 -3.15 16 12 C 0.03 1.90 4.45 29.85 0.13 2.04 16 13 C -0.53 -30.80 8.44 25.60 0.22 -30.59 16 14 H 0.06 3.39 7.08 -2.91 -0.02 3.37 16 15 C 0.00 -0.17 5.46 84.65 0.46 0.30 16 16 N -0.94 -58.93 13.29 21.45 0.28 -58.65 16 17 Si 0.96 45.31 29.54 68.60 2.03 47.33 16 18 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 19 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 20 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 21 C -0.10 -3.87 5.38 30.64 0.16 -3.71 16 22 C 0.07 1.95 5.23 86.32 0.45 2.40 16 23 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 27 H 0.05 1.03 6.05 -2.39 -0.01 1.02 16 28 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 29 H 0.05 1.00 6.13 -2.38 -0.01 0.99 16 30 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 34 H 0.08 2.29 5.84 -2.39 -0.01 2.27 16 35 H 0.03 0.99 8.14 -2.38 -0.02 0.97 16 36 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.06 2.34 7.05 -2.39 -0.02 2.33 16 38 H 0.05 2.18 8.14 -2.38 -0.02 2.16 16 39 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 40 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 41 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 42 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 43 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 44 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.08 2.17 5.95 -2.39 -0.01 2.16 16 Total: -1.00 -70.36 346.34 2.67 -67.69 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: 0.93 Total: 9.11 kcal Atomic # 6 Polarization: -29.98 SS G_CDS: 5.36 Total: -24.62 kcal Atomic # 7 Polarization: -74.45 SS G_CDS: -3.51 Total: -77.97 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -2.13 Total: -21.54 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.33 kcal Total: -70.36 2.67 -67.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399442385.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.624 kcal (2) G-P(sol) polarization free energy of solvation -70.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds