Wall clock time and date at job start Mon Mar 30 2020 06:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 114.00322 * 2 1 4 4 C 1.53002 * 109.47237 * 180.02562 * 3 2 1 5 5 N 1.46897 * 109.47179 * 63.94205 * 4 3 2 6 6 C 1.46898 * 111.00108 * 200.12551 * 5 4 3 7 7 C 1.50702 * 109.47048 * 66.04259 * 6 5 4 8 8 H 1.07998 * 120.00060 * 0.02562 * 7 6 5 9 9 C 1.37884 * 119.99818 * 180.02562 * 7 6 5 10 10 N 1.31517 * 119.99711 * 180.02562 * 9 7 6 11 11 Si 1.86799 * 120.00117 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47255 * 89.99904 * 11 9 7 13 13 H 1.48500 * 109.47218 * 210.00171 * 11 9 7 14 14 H 1.48504 * 109.47179 * 329.99794 * 11 9 7 15 15 C 1.46897 * 111.00616 * 76.16637 * 5 4 3 16 16 C 1.52994 * 109.47658 * 196.86396 * 15 5 4 17 17 C 1.53001 * 109.47161 * 174.35805 * 16 15 5 18 18 C 1.52994 * 109.47161 * 179.97438 * 17 16 15 19 19 H 1.09005 * 110.45634 * 52.39582 * 18 17 16 20 20 C 1.54509 * 110.51227 * 175.00004 * 18 17 16 21 21 C 1.54483 * 104.06385 * 118.64647 * 20 18 17 22 22 O 1.44424 * 104.80232 * 23.97684 * 21 20 18 23 23 C 1.44419 * 105.27612 * 319.49190 * 22 21 20 24 24 H 1.09001 * 109.46954 * 59.99761 * 1 2 3 25 25 H 1.08991 * 109.47619 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46820 * 300.00656 * 1 2 3 27 27 H 1.08999 * 109.47034 * 59.99954 * 3 2 1 28 28 H 1.09001 * 109.47322 * 299.99818 * 3 2 1 29 29 H 1.09001 * 109.47235 * 303.94262 * 4 3 2 30 30 H 1.09003 * 109.47099 * 183.93807 * 4 3 2 31 31 H 1.08998 * 109.47211 * 186.03990 * 6 5 4 32 32 H 1.09004 * 109.47120 * 306.04613 * 6 5 4 33 33 H 0.97000 * 119.99640 * 179.97438 * 10 9 7 34 34 H 1.09000 * 109.46708 * 316.87069 * 15 5 4 35 35 H 1.09001 * 109.46765 * 76.85938 * 15 5 4 36 36 H 1.09002 * 109.47091 * 294.35925 * 16 15 5 37 37 H 1.08997 * 109.46864 * 54.35835 * 16 15 5 38 38 H 1.09002 * 109.47216 * 300.00043 * 17 16 15 39 39 H 1.08997 * 109.47207 * 60.00240 * 17 16 15 40 40 H 1.09000 * 110.51140 * 237.28953 * 20 18 17 41 41 H 1.08992 * 110.51353 * 359.97438 * 20 18 17 42 42 H 1.08994 * 110.37293 * 142.81009 * 21 20 18 43 43 H 1.08993 * 110.36988 * 265.03409 * 21 20 18 44 44 H 1.09001 * 110.37542 * 281.67878 * 23 22 21 45 45 H 1.09004 * 110.37180 * 159.34368 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9751 0.5396 -1.2451 6 6 5.3245 -0.0222 -1.0988 7 6 5.2930 -1.1515 -0.1014 8 1 4.3635 -1.4248 0.3757 9 6 6.4510 -1.8357 0.2021 10 7 6.4235 -2.8215 1.0721 11 14 8.0589 -1.3624 -0.6226 12 1 8.7491 -0.3314 0.1933 13 1 8.9262 -2.5620 -0.7413 14 1 7.7797 -0.8178 -1.9757 15 6 3.9149 1.4776 -2.3740 16 6 3.9645 0.6970 -3.6890 17 6 3.7607 1.6590 -4.8611 18 6 3.8109 0.8786 -6.1761 19 1 3.1195 0.0364 -6.1459 20 6 3.4836 1.8052 -7.3684 21 6 4.7627 1.7690 -8.2340 22 8 5.4042 0.5210 -7.8924 23 6 5.2489 0.3922 -6.4624 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0275 0.0005 26 1 -0.3633 0.5140 0.8900 27 1 1.6887 1.8463 0.8900 28 1 1.6887 1.8464 -0.8900 29 1 3.8527 0.5837 0.8517 30 1 3.9787 2.1779 0.0699 31 1 5.6680 -0.3981 -2.0625 32 1 6.0050 0.7537 -0.7478 33 1 7.2380 -3.3031 1.2853 34 1 2.9868 2.0469 -2.3242 35 1 4.7631 2.1604 -2.3246 36 1 4.9338 0.2078 -3.7848 37 1 3.1757 -0.0552 -3.6949 38 1 2.7913 2.1483 -4.7653 39 1 4.5494 2.4112 -4.8552 40 1 2.6321 1.4198 -7.9291 41 1 3.2856 2.8191 -7.0211 42 1 4.5049 1.7857 -9.2929 43 1 5.4107 2.6103 -7.9887 44 1 5.9724 1.0213 -5.9438 45 1 5.3646 -0.6487 -6.1603 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400924713.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:56 Heat of formation + Delta-G solvation = -98.657393 kcal Electronic energy + Delta-G solvation = -21662.315749 eV Core-core repulsion = 18486.711006 eV Total energy + Delta-G solvation = -3175.604742 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.57877 -37.94877 -36.56445 -34.53313 -32.44797 -31.23099 -29.62895 -28.98836 -27.01271 -25.82997 -24.49174 -22.99956 -22.02634 -21.33959 -20.28223 -19.54227 -16.84884 -16.52316 -15.98952 -15.77355 -15.74002 -15.50496 -14.86496 -14.65460 -14.23646 -13.93011 -13.72607 -13.44013 -12.96898 -12.75564 -12.40241 -12.36415 -12.05244 -11.96186 -11.59143 -11.41714 -11.29109 -11.21770 -10.86047 -10.71503 -10.64125 -10.62973 -10.37343 -10.27137 -9.87111 -9.77238 -9.74064 -9.25687 -9.07976 -8.50950 -7.30127 -5.97809 -3.93951 3.30999 3.39328 3.40647 3.89871 4.27432 4.42879 4.47207 4.60934 4.72667 4.85687 4.99825 5.17780 5.25948 5.33837 5.38884 5.45194 5.49203 5.55406 5.58506 5.60364 5.67110 5.70864 5.75725 5.78700 5.85658 5.88611 5.91842 5.94980 6.01359 6.09908 6.16582 6.20497 6.50666 6.65883 6.69740 6.73241 6.91222 7.00202 7.63551 7.72650 7.98574 8.13854 8.74865 9.16727 9.64360 11.15513 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.011547 B = 0.005643 C = 0.004052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2424.237433 B = 4960.969080 C = 6907.885468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.361 6.361 3 C 0.072 3.928 4 C 0.058 3.942 5 N -0.517 5.517 6 C 0.162 3.838 7 C -0.505 4.505 8 H 0.086 0.914 9 C 0.068 3.932 10 N -0.901 5.901 11 Si 0.871 3.129 12 H -0.279 1.279 13 H -0.286 1.286 14 H -0.268 1.268 15 C 0.053 3.947 16 C -0.115 4.115 17 C -0.107 4.107 18 C -0.120 4.120 19 H 0.085 0.915 20 C -0.152 4.152 21 C 0.044 3.956 22 O -0.380 6.380 23 C 0.047 3.953 24 H 0.032 0.968 25 H 0.081 0.919 26 H 0.031 0.969 27 H 0.040 0.960 28 H 0.038 0.962 29 H 0.100 0.900 30 H 0.034 0.966 31 H 0.030 0.970 32 H -0.020 1.020 33 H 0.262 0.738 34 H 0.059 0.941 35 H 0.020 0.980 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.087 0.913 43 H 0.057 0.943 44 H 0.062 0.938 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.345 12.277 -12.419 19.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.279 6.279 3 C -0.006 4.006 4 C -0.070 4.070 5 N -0.241 5.241 6 C 0.036 3.964 7 C -0.543 4.543 8 H 0.104 0.896 9 C -0.133 4.133 10 N -0.540 5.540 11 Si 0.699 3.301 12 H -0.205 1.205 13 H -0.212 1.212 14 H -0.192 1.192 15 C -0.075 4.075 16 C -0.153 4.153 17 C -0.146 4.146 18 C -0.139 4.139 19 H 0.104 0.896 20 C -0.190 4.190 21 C -0.033 4.033 22 O -0.298 6.298 23 C -0.029 4.029 24 H 0.050 0.950 25 H 0.099 0.901 26 H 0.050 0.950 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.118 0.882 30 H 0.052 0.948 31 H 0.048 0.952 32 H -0.003 1.003 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.039 0.961 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.092 0.908 41 H 0.095 0.905 42 H 0.105 0.895 43 H 0.075 0.925 44 H 0.080 0.920 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.320 11.428 -12.567 18.914 hybrid contribution 1.156 1.274 -0.030 1.720 sum -7.164 12.702 -12.597 19.270 Atomic orbital electron populations 1.22668 0.82966 1.02193 0.98769 1.88163 1.17648 1.27084 1.94959 1.22576 0.94903 0.84846 0.98241 1.22062 0.91947 0.97326 0.95709 1.61873 1.28208 1.31967 1.02015 1.20216 0.84109 0.94480 0.97611 1.21117 0.96785 1.14083 1.22316 0.89630 1.24898 0.98514 0.94932 0.94983 1.69902 1.28132 1.22081 1.33907 0.86930 0.84470 0.78118 0.80595 1.20512 1.21218 1.19242 1.22100 0.99146 0.94019 0.92253 1.21590 1.03038 0.98192 0.92489 1.21634 1.01704 0.98028 0.93190 1.22568 0.97685 0.98779 0.94878 0.89648 1.23023 0.98630 1.00604 0.96716 1.23382 0.92795 0.87389 0.99768 1.89115 1.78432 1.39397 1.22901 1.23592 0.95483 1.02549 0.81316 0.94968 0.90078 0.95047 0.94220 0.94424 0.88156 0.94796 0.95165 1.00272 0.92807 0.92278 0.96148 0.91752 0.90842 0.91832 0.92179 0.90841 0.90488 0.89482 0.92520 0.92021 0.88747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.54 16 2 O -0.36 -6.77 10.63 -35.23 -0.37 -7.14 16 3 C 0.07 1.17 6.12 37.16 0.23 1.40 16 4 C 0.06 1.11 5.19 -3.82 -0.02 1.09 16 5 N -0.52 -10.75 4.31 -236.08 -1.02 -11.77 16 6 C 0.16 3.93 3.63 -4.98 -0.02 3.91 16 7 C -0.50 -14.48 8.78 -34.44 -0.30 -14.79 16 8 H 0.09 2.72 7.56 -52.49 -0.40 2.33 16 9 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 10 N -0.90 -27.95 13.96 55.43 0.77 -27.18 16 11 Si 0.87 21.72 27.47 -169.99 -4.67 17.05 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 14 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 15 C 0.05 0.88 4.79 -3.83 -0.02 0.87 16 16 C -0.12 -1.74 5.06 -26.73 -0.14 -1.87 16 17 C -0.11 -1.24 4.43 -26.73 -0.12 -1.36 16 18 C -0.12 -1.34 3.11 -89.05 -0.28 -1.61 16 19 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 20 C -0.15 -1.40 6.74 -25.16 -0.17 -1.57 16 21 C 0.04 0.43 7.63 37.94 0.29 0.72 16 22 O -0.38 -5.07 11.65 -35.23 -0.41 -5.48 16 23 C 0.05 0.59 6.51 37.93 0.25 0.84 16 24 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.04 0.55 6.69 -51.93 -0.35 0.21 16 29 H 0.10 2.24 6.58 -51.93 -0.34 1.90 16 30 H 0.03 0.58 7.99 -51.93 -0.42 0.17 16 31 H 0.03 0.74 5.62 -51.93 -0.29 0.45 16 32 H -0.02 -0.49 7.55 -51.93 -0.39 -0.89 16 33 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 34 H 0.06 0.87 6.51 -51.93 -0.34 0.53 16 35 H 0.02 0.34 8.04 -51.93 -0.42 -0.08 16 36 H 0.06 1.07 6.34 -51.93 -0.33 0.74 16 37 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.67 7.96 -51.93 -0.41 0.26 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.08 0.62 7.73 -51.93 -0.40 0.22 16 42 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.06 0.77 7.74 -51.93 -0.40 0.37 16 45 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 351.44 15.07 5.30 5.30 Total: -1.00 -32.30 351.44 -7.98 -40.28 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -8.30 Total: -2.11 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: 0.72 Total: -8.96 kcal Atomic # 7 Polarization: -38.70 SS G_CDS: -0.24 Total: -38.94 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: -0.79 Total: -12.62 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.67 Total: 17.05 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.30 -7.98 -40.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400924713.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.374 kcal (2) G-P(sol) polarization free energy of solvation -32.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds