Wall clock time and date at job start Mon Mar 30 2020 06:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 114.00322 * 2 1 4 4 C 1.53002 * 109.47237 * 180.02562 * 3 2 1 5 5 N 1.46897 * 109.47179 * 63.94205 * 4 3 2 6 6 C 1.46898 * 111.00108 * 200.12551 * 5 4 3 7 7 C 1.50702 * 109.47048 * 66.04259 * 6 5 4 8 8 H 1.07998 * 120.00060 * 0.02562 * 7 6 5 9 9 C 1.37884 * 119.99818 * 180.02562 * 7 6 5 10 10 N 1.31517 * 119.99711 * 180.02562 * 9 7 6 11 11 Si 1.86799 * 120.00117 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47255 * 89.99904 * 11 9 7 13 13 H 1.48500 * 109.47218 * 210.00171 * 11 9 7 14 14 H 1.48504 * 109.47179 * 329.99794 * 11 9 7 15 15 C 1.46897 * 111.00616 * 76.16637 * 5 4 3 16 16 C 1.52994 * 109.47658 * 196.86396 * 15 5 4 17 17 C 1.53001 * 109.47161 * 174.35805 * 16 15 5 18 18 C 1.52994 * 109.47161 * 179.97438 * 17 16 15 19 19 H 1.09005 * 110.45634 * 52.39582 * 18 17 16 20 20 C 1.54509 * 110.51227 * 175.00004 * 18 17 16 21 21 C 1.54483 * 104.06385 * 118.64647 * 20 18 17 22 22 O 1.44424 * 104.80232 * 23.97684 * 21 20 18 23 23 C 1.44419 * 105.27612 * 319.49190 * 22 21 20 24 24 H 1.09001 * 109.46954 * 59.99761 * 1 2 3 25 25 H 1.08991 * 109.47619 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46820 * 300.00656 * 1 2 3 27 27 H 1.08999 * 109.47034 * 59.99954 * 3 2 1 28 28 H 1.09001 * 109.47322 * 299.99818 * 3 2 1 29 29 H 1.09001 * 109.47235 * 303.94262 * 4 3 2 30 30 H 1.09003 * 109.47099 * 183.93807 * 4 3 2 31 31 H 1.08998 * 109.47211 * 186.03990 * 6 5 4 32 32 H 1.09004 * 109.47120 * 306.04613 * 6 5 4 33 33 H 0.97000 * 119.99640 * 179.97438 * 10 9 7 34 34 H 1.09000 * 109.46708 * 316.87069 * 15 5 4 35 35 H 1.09001 * 109.46765 * 76.85938 * 15 5 4 36 36 H 1.09002 * 109.47091 * 294.35925 * 16 15 5 37 37 H 1.08997 * 109.46864 * 54.35835 * 16 15 5 38 38 H 1.09002 * 109.47216 * 300.00043 * 17 16 15 39 39 H 1.08997 * 109.47207 * 60.00240 * 17 16 15 40 40 H 1.09000 * 110.51140 * 237.28953 * 20 18 17 41 41 H 1.08992 * 110.51353 * 359.97438 * 20 18 17 42 42 H 1.08994 * 110.37293 * 142.81009 * 21 20 18 43 43 H 1.08993 * 110.36988 * 265.03409 * 21 20 18 44 44 H 1.09001 * 110.37542 * 281.67878 * 23 22 21 45 45 H 1.09004 * 110.37180 * 159.34368 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9751 0.5396 -1.2451 6 6 5.3245 -0.0222 -1.0988 7 6 5.2930 -1.1515 -0.1014 8 1 4.3635 -1.4248 0.3757 9 6 6.4510 -1.8357 0.2021 10 7 6.4235 -2.8215 1.0721 11 14 8.0589 -1.3624 -0.6226 12 1 8.7491 -0.3314 0.1933 13 1 8.9262 -2.5620 -0.7413 14 1 7.7797 -0.8178 -1.9757 15 6 3.9149 1.4776 -2.3740 16 6 3.9645 0.6970 -3.6890 17 6 3.7607 1.6590 -4.8611 18 6 3.8109 0.8786 -6.1761 19 1 3.1195 0.0364 -6.1459 20 6 3.4836 1.8052 -7.3684 21 6 4.7627 1.7690 -8.2340 22 8 5.4042 0.5210 -7.8924 23 6 5.2489 0.3922 -6.4624 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0275 0.0005 26 1 -0.3633 0.5140 0.8900 27 1 1.6887 1.8463 0.8900 28 1 1.6887 1.8464 -0.8900 29 1 3.8527 0.5837 0.8517 30 1 3.9787 2.1779 0.0699 31 1 5.6680 -0.3981 -2.0625 32 1 6.0050 0.7537 -0.7478 33 1 7.2380 -3.3031 1.2853 34 1 2.9868 2.0469 -2.3242 35 1 4.7631 2.1604 -2.3246 36 1 4.9338 0.2078 -3.7848 37 1 3.1757 -0.0552 -3.6949 38 1 2.7913 2.1483 -4.7653 39 1 4.5494 2.4112 -4.8552 40 1 2.6321 1.4198 -7.9291 41 1 3.2856 2.8191 -7.0211 42 1 4.5049 1.7857 -9.2929 43 1 5.4107 2.6103 -7.9887 44 1 5.9724 1.0213 -5.9438 45 1 5.3646 -0.6487 -6.1603 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400924713.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:55 Heat of formation + Delta-G solvation = -121.791283 kcal Electronic energy + Delta-G solvation = -21663.318910 eV Core-core repulsion = 18486.711006 eV Total energy + Delta-G solvation = -3176.607903 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.46958 -39.36224 -37.94125 -35.68857 -34.56690 -32.28245 -31.14903 -30.16166 -28.51599 -26.98674 -25.78529 -24.04692 -23.72507 -22.48804 -21.28565 -20.97472 -18.97478 -17.45634 -17.29351 -17.12882 -16.69486 -16.51405 -16.28028 -16.11117 -15.58295 -15.51309 -15.02964 -14.58609 -14.49808 -14.21050 -13.68079 -13.66614 -13.36980 -13.16051 -12.87531 -12.71873 -12.53157 -12.50425 -12.30256 -12.10363 -11.93701 -11.78699 -11.62468 -11.59051 -11.38628 -11.18223 -11.18032 -10.76091 -10.74370 -10.41249 -8.90205 -8.24586 -6.26370 1.32796 1.35516 1.45853 2.35448 3.02650 3.07656 3.08816 3.24231 3.65856 3.80943 3.95558 4.12112 4.18819 4.25444 4.32379 4.35269 4.42778 4.48707 4.50305 4.59863 4.60559 4.67161 4.71723 4.75878 4.82103 4.85879 4.86870 4.89886 4.90238 4.98902 5.03503 5.07768 5.16236 5.19613 5.25949 5.40617 5.49470 5.62661 5.87028 6.07911 6.38683 6.56760 6.77570 6.82691 7.36390 8.92648 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.011547 B = 0.005643 C = 0.004052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2424.237433 B = 4960.969080 C = 6907.885468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.409 6.409 3 C 0.077 3.923 4 C 0.056 3.944 5 N -0.536 5.536 6 C 0.174 3.826 7 C -0.508 4.508 8 H 0.036 0.964 9 C 0.007 3.993 10 N -0.950 5.950 11 Si 0.943 3.057 12 H -0.267 1.267 13 H -0.283 1.283 14 H -0.249 1.249 15 C 0.054 3.946 16 C -0.111 4.111 17 C -0.095 4.095 18 C -0.119 4.119 19 H 0.078 0.922 20 C -0.144 4.144 21 C 0.036 3.964 22 O -0.406 6.406 23 C 0.043 3.957 24 H 0.052 0.948 25 H 0.081 0.919 26 H 0.050 0.950 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.030 0.970 32 H -0.018 1.018 33 H 0.265 0.735 34 H 0.085 0.915 35 H 0.028 0.972 36 H 0.043 0.957 37 H 0.057 0.943 38 H 0.083 0.917 39 H 0.069 0.931 40 H 0.082 0.918 41 H 0.096 0.904 42 H 0.103 0.897 43 H 0.066 0.934 44 H 0.061 0.939 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.782 15.118 -14.390 22.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.328 6.328 3 C 0.000 4.000 4 C -0.072 4.072 5 N -0.260 5.260 6 C 0.047 3.953 7 C -0.547 4.547 8 H 0.054 0.946 9 C -0.190 4.190 10 N -0.592 5.592 11 Si 0.767 3.233 12 H -0.192 1.192 13 H -0.209 1.209 14 H -0.173 1.173 15 C -0.074 4.074 16 C -0.149 4.149 17 C -0.132 4.132 18 C -0.138 4.138 19 H 0.096 0.904 20 C -0.182 4.182 21 C -0.040 4.040 22 O -0.325 6.325 23 C -0.034 4.034 24 H 0.070 0.930 25 H 0.100 0.900 26 H 0.068 0.932 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.048 0.952 32 H 0.000 1.000 33 H 0.074 0.926 34 H 0.103 0.897 35 H 0.046 0.954 36 H 0.061 0.939 37 H 0.075 0.925 38 H 0.101 0.899 39 H 0.088 0.912 40 H 0.100 0.900 41 H 0.114 0.886 42 H 0.121 0.879 43 H 0.084 0.916 44 H 0.079 0.921 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.786 14.297 -14.550 22.211 hybrid contribution 1.173 0.363 0.626 1.379 sum -7.613 14.660 -13.923 21.604 Atomic orbital electron populations 1.22849 0.80495 1.02979 1.00600 1.88100 1.20562 1.28790 1.95373 1.22579 0.92512 0.84439 1.00469 1.22066 0.94508 0.97223 0.93416 1.61783 1.25888 1.34367 1.03994 1.19920 0.86476 0.93086 0.95799 1.21308 0.94972 1.15493 1.22902 0.94605 1.25833 1.02780 0.94747 0.95646 1.70070 1.29450 1.23749 1.35911 0.85774 0.79110 0.78124 0.80283 1.19234 1.20855 1.17287 1.22223 1.00738 0.93542 0.90881 1.21536 1.01269 0.98546 0.93538 1.21532 1.03085 0.97184 0.91441 1.22528 0.96509 0.99083 0.95689 0.90354 1.23002 0.98496 1.01104 0.95579 1.23629 0.93112 0.86340 1.00962 1.89086 1.79123 1.41235 1.23090 1.23597 0.96587 1.01872 0.81317 0.92990 0.90005 0.93174 0.91835 0.92007 0.92751 0.92490 0.95215 1.00015 0.92621 0.89665 0.95370 0.93861 0.92459 0.89879 0.91189 0.89965 0.88587 0.87894 0.91580 0.92091 0.90144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 11.01 113.37 1.25 1.95 16 2 O -0.41 -15.30 10.63 -148.98 -1.58 -16.88 16 3 C 0.08 2.38 6.12 71.98 0.44 2.82 16 4 C 0.06 2.13 5.19 86.30 0.45 2.58 16 5 N -0.54 -22.16 4.31 -900.81 -3.88 -26.04 16 6 C 0.17 8.50 3.63 85.56 0.31 8.81 16 7 C -0.51 -30.39 8.78 25.60 0.22 -30.17 16 8 H 0.04 2.44 7.56 -2.91 -0.02 2.42 16 9 C 0.01 0.39 5.47 84.66 0.46 0.86 16 10 N -0.95 -61.24 13.96 21.45 0.30 -60.94 16 11 Si 0.94 45.19 27.47 68.60 1.88 47.08 16 12 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 13 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 14 H -0.25 -11.10 6.54 99.48 0.65 -10.45 16 15 C 0.05 1.66 4.79 86.30 0.41 2.07 16 16 C -0.11 -3.18 5.06 30.59 0.15 -3.03 16 17 C -0.09 -1.89 4.43 30.59 0.14 -1.75 16 18 C -0.12 -2.40 3.11 -9.78 -0.03 -2.43 16 19 H 0.08 1.68 8.14 -2.38 -0.02 1.67 16 20 C -0.14 -2.19 6.74 31.61 0.21 -1.98 16 21 C 0.04 0.62 7.63 72.49 0.55 1.17 16 22 O -0.41 -10.36 11.65 -148.98 -1.74 -12.09 16 23 C 0.04 1.04 6.51 72.48 0.47 1.51 16 24 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 26 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.06 1.60 6.69 -2.39 -0.02 1.59 16 29 H 0.05 2.55 6.58 -2.39 -0.02 2.53 16 30 H 0.06 1.86 7.99 -2.39 -0.02 1.84 16 31 H 0.03 1.45 5.62 -2.39 -0.01 1.44 16 32 H -0.02 -0.85 7.55 -2.38 -0.02 -0.87 16 33 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 34 H 0.09 2.19 6.51 -2.39 -0.02 2.17 16 35 H 0.03 0.84 8.04 -2.39 -0.02 0.82 16 36 H 0.04 1.41 6.34 -2.39 -0.02 1.39 16 37 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.07 1.30 7.96 -2.39 -0.02 1.28 16 40 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.10 1.12 7.73 -2.39 -0.02 1.10 16 42 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.06 1.45 7.74 -2.39 -0.02 1.43 16 45 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -73.49 351.44 0.90 -72.59 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: 0.87 Total: 13.88 kcal Atomic # 6 Polarization: -22.64 SS G_CDS: 5.05 Total: -17.59 kcal Atomic # 7 Polarization: -83.39 SS G_CDS: -3.58 Total: -86.97 kcal Atomic # 8 Polarization: -25.65 SS G_CDS: -3.32 Total: -28.97 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.88 Total: 47.08 kcal Total: -73.49 0.90 -72.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400924713.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.204 kcal (2) G-P(sol) polarization free energy of solvation -73.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds