Wall clock time and date at job start Mon Mar 30 2020 05:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 113.99837 * 2 1 4 4 C 1.52999 * 109.57545 * 305.02531 * 3 2 1 5 5 O 1.42894 * 109.47404 * 299.23385 * 4 3 2 6 6 C 1.53118 * 109.52186 * 65.18552 * 3 2 1 7 7 C 1.53040 * 109.28113 * 62.24812 * 6 3 2 8 8 N 1.46844 * 109.51919 * 59.17899 * 7 6 3 9 9 C 1.46907 * 110.99605 * 174.16250 * 8 7 6 10 10 C 1.53003 * 109.46852 * 170.00198 * 9 8 7 11 11 C 1.53002 * 109.47107 * 180.02562 * 10 9 8 12 12 C 1.52994 * 109.47026 * 179.97438 * 11 10 9 13 13 C 1.50708 * 109.46985 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99705 * 359.97438 * 13 12 11 15 15 C 1.37872 * 120.00245 * 179.97438 * 13 12 11 16 16 N 1.31516 * 120.00358 * 179.97438 * 15 13 12 17 17 Si 1.86809 * 119.99747 * 0.02562 * 15 13 12 18 18 H 1.48494 * 109.46879 * 89.99868 * 17 15 13 19 19 H 1.48498 * 109.46711 * 209.99561 * 17 15 13 20 20 H 1.48498 * 109.47088 * 329.99594 * 17 15 13 21 21 C 1.46848 * 111.20201 * 298.25831 * 8 7 6 22 22 C 1.53031 * 109.52038 * 61.74289 * 21 8 7 23 23 H 1.09007 * 109.46856 * 64.59227 * 1 2 3 24 24 H 1.08998 * 109.47334 * 184.58733 * 1 2 3 25 25 H 1.08996 * 109.47526 * 304.59557 * 1 2 3 26 26 H 1.09002 * 109.46918 * 59.23454 * 4 3 2 27 27 H 1.09003 * 109.47118 * 179.23269 * 4 3 2 28 28 H 0.96696 * 114.00346 * 180.02562 * 5 4 3 29 29 H 1.09000 * 109.50240 * 302.30746 * 6 3 2 30 30 H 1.09000 * 109.53628 * 182.21065 * 6 3 2 31 31 H 1.08994 * 109.46032 * 299.16509 * 7 6 3 32 32 H 1.09000 * 109.46283 * 179.19587 * 7 6 3 33 33 H 1.08993 * 109.47269 * 50.00091 * 9 8 7 34 34 H 1.08996 * 109.47230 * 289.99594 * 9 8 7 35 35 H 1.08993 * 109.47271 * 59.99894 * 10 9 8 36 36 H 1.09007 * 109.47161 * 299.99605 * 10 9 8 37 37 H 1.08996 * 109.46995 * 59.99318 * 11 10 9 38 38 H 1.09007 * 109.46580 * 299.99707 * 11 10 9 39 39 H 1.08997 * 109.47309 * 299.99391 * 12 11 10 40 40 H 1.09000 * 109.47549 * 60.00281 * 12 11 10 41 41 H 0.96996 * 119.99934 * 180.02562 * 16 15 13 42 42 H 1.08995 * 109.46371 * 181.76183 * 21 8 7 43 43 H 1.09008 * 109.45964 * 301.73129 * 21 8 7 44 44 H 1.09005 * 109.50331 * 180.88061 * 22 21 8 45 45 H 1.09000 * 109.50602 * 60.76529 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4628 2.1103 -1.1805 5 8 1.8042 1.4545 -2.4033 6 6 1.6650 2.0192 1.3099 7 6 2.2671 1.2421 2.4828 8 7 3.7240 1.1581 2.3194 9 6 4.3507 0.5396 3.4953 10 6 5.8206 0.2416 3.1923 11 6 6.4732 -0.4032 4.4168 12 6 7.9428 -0.7017 4.1135 13 6 8.5858 -1.3362 5.3198 14 1 8.0044 -1.5089 6.2135 15 6 9.9161 -1.6963 5.2826 16 7 10.4774 -2.2496 6.3354 17 14 10.9218 -1.3970 3.7370 18 1 11.5445 -0.0506 3.8048 19 1 11.9842 -2.4290 3.6303 20 1 10.0361 -1.4734 2.5476 21 6 4.0800 0.4350 1.0919 22 6 3.5320 1.1881 -0.1223 23 1 -0.3633 0.4410 -0.9283 24 1 -0.3634 -1.0243 0.0822 25 1 -0.3634 0.5835 0.8459 26 1 0.3784 2.1841 -1.0982 27 1 1.8968 3.1101 -1.1710 28 1 1.4887 1.9103 -3.1955 29 1 0.5820 2.0679 1.4233 30 1 2.0749 3.0291 1.2938 31 1 1.8458 0.2371 2.5069 32 1 2.0352 1.7555 3.4159 33 1 3.8339 -0.3893 3.7361 34 1 4.2856 1.2218 4.3429 35 1 6.3374 1.1705 2.9515 36 1 5.8858 -0.4407 2.3447 37 1 5.9561 -1.3321 4.6571 38 1 6.4080 0.2788 5.2646 39 1 8.0076 -1.3838 3.2658 40 1 8.4601 0.2271 3.8729 41 1 11.4134 -2.5026 6.3093 42 1 5.1648 0.3622 1.0149 43 1 3.6501 -0.5663 1.1226 44 1 3.7829 0.6430 -1.0323 45 1 3.9718 2.1846 -0.1615 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401780317.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:23 Heat of formation + Delta-G solvation = -130.399777 kcal Electronic energy + Delta-G solvation = -21692.195983 eV Core-core repulsion = 18515.214788 eV Total energy + Delta-G solvation = -3176.981195 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.14905 -38.67887 -37.05128 -36.36006 -34.63724 -33.28275 -32.01701 -30.53321 -28.07341 -27.71188 -25.79766 -24.45718 -23.24569 -22.05590 -21.39604 -20.57063 -18.85052 -18.27743 -17.47374 -17.00532 -16.47665 -16.36498 -16.32705 -16.20112 -15.62831 -15.21302 -14.87974 -14.64760 -14.27400 -14.23913 -13.79740 -13.70242 -13.47427 -13.20869 -13.06522 -12.85250 -12.75537 -12.37373 -12.33890 -12.10644 -11.85350 -11.76921 -11.70604 -11.40529 -11.35834 -11.19539 -11.02653 -10.80726 -10.76275 -10.41495 -9.25292 -8.29827 -6.33927 1.35710 1.37822 1.50433 2.36581 2.75106 2.95839 3.05493 3.33441 3.70380 3.73044 3.96439 4.11209 4.17404 4.26310 4.32452 4.39327 4.39926 4.45767 4.49158 4.51354 4.57639 4.64819 4.65606 4.77160 4.80363 4.85560 4.86743 4.90946 5.00404 5.08729 5.12568 5.17329 5.20406 5.23728 5.28927 5.56300 5.64225 5.68123 6.10885 6.18206 6.29457 6.34998 6.74237 6.90042 7.30933 8.87270 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.032893 B = 0.003219 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.046230 B = 8695.463691 C = 9137.186455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.395 6.395 3 C 0.112 3.888 4 C 0.054 3.946 5 O -0.583 6.583 6 C -0.132 4.132 7 C 0.059 3.941 8 N -0.539 5.539 9 C 0.064 3.936 10 C -0.111 4.111 11 C -0.094 4.094 12 C -0.012 4.012 13 C -0.535 4.535 14 H 0.030 0.970 15 C 0.001 3.999 16 N -0.954 5.954 17 Si 0.954 3.046 18 H -0.264 1.264 19 H -0.283 1.283 20 H -0.248 1.248 21 C 0.051 3.949 22 C -0.092 4.092 23 H 0.050 0.950 24 H 0.085 0.915 25 H 0.054 0.946 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.395 0.605 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.025 0.975 32 H 0.085 0.915 33 H 0.025 0.975 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.042 0.958 38 H 0.050 0.950 39 H 0.016 0.984 40 H 0.019 0.981 41 H 0.266 0.734 42 H 0.078 0.922 43 H 0.021 0.979 44 H 0.068 0.932 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.898 12.555 -18.204 32.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.315 6.315 3 C 0.073 3.927 4 C -0.024 4.024 5 O -0.391 6.391 6 C -0.170 4.170 7 C -0.069 4.069 8 N -0.263 5.263 9 C -0.064 4.064 10 C -0.149 4.149 11 C -0.132 4.132 12 C -0.049 4.049 13 C -0.573 4.573 14 H 0.048 0.952 15 C -0.195 4.195 16 N -0.594 5.594 17 Si 0.777 3.223 18 H -0.189 1.189 19 H -0.209 1.209 20 H -0.171 1.171 21 C -0.076 4.076 22 C -0.129 4.129 23 H 0.068 0.932 24 H 0.103 0.897 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.244 0.756 29 H 0.108 0.892 30 H 0.111 0.889 31 H 0.044 0.956 32 H 0.103 0.897 33 H 0.044 0.956 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.035 0.965 40 H 0.037 0.963 41 H 0.075 0.925 42 H 0.096 0.904 43 H 0.039 0.961 44 H 0.087 0.913 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -23.199 12.380 -17.772 31.738 hybrid contribution 0.023 -0.655 -0.222 0.692 sum -23.176 11.725 -17.994 31.597 Atomic orbital electron populations 1.22889 0.80632 1.03200 1.00695 1.87990 1.20688 1.27822 1.94968 1.21723 0.94087 0.83436 0.93480 1.22794 0.99472 0.95642 0.84524 1.86528 1.81672 1.54436 1.16420 1.22077 1.01684 1.00354 0.92838 1.22007 0.86784 0.98921 0.99192 1.62108 1.09704 1.52275 1.02244 1.22052 0.93932 0.97253 0.93170 1.21679 0.94817 1.00732 0.97646 1.21289 0.95314 0.99206 0.97416 1.19534 0.94417 0.95828 0.95132 1.21568 0.95899 1.39796 1.00027 0.95184 1.26076 0.99260 0.94257 0.99946 1.70077 1.13339 1.44065 1.31967 0.85605 0.78226 0.78466 0.80045 1.18906 1.20867 1.17135 1.22124 1.00718 0.94933 0.89869 1.21467 0.92549 1.01823 0.97108 0.93164 0.89692 0.92707 0.91801 0.91144 0.75597 0.89189 0.88903 0.95634 0.89687 0.95630 0.90089 0.91225 0.92204 0.93873 0.93085 0.96550 0.96255 0.92483 0.90415 0.96066 0.91329 0.89271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 10.13 113.37 1.15 1.48 16 2 O -0.40 -8.84 9.11 -140.58 -1.28 -10.12 16 3 C 0.11 2.05 0.49 -10.71 -0.01 2.05 16 4 C 0.05 0.70 5.45 71.98 0.39 1.09 16 5 O -0.58 -9.05 12.92 -140.58 -1.82 -10.87 16 6 C -0.13 -2.03 4.72 30.65 0.14 -1.89 16 7 C 0.06 1.20 5.29 86.33 0.46 1.66 16 8 N -0.54 -13.36 4.81 -896.37 -4.31 -17.67 16 9 C 0.06 1.77 5.27 86.30 0.46 2.22 16 10 C -0.11 -3.59 4.46 30.60 0.14 -3.45 16 11 C -0.09 -3.81 5.15 30.59 0.16 -3.65 16 12 C -0.01 -0.57 4.04 29.85 0.12 -0.45 16 13 C -0.53 -32.20 9.66 25.60 0.25 -31.95 16 14 H 0.03 1.98 7.99 -2.91 -0.02 1.95 16 15 C 0.00 0.06 5.47 84.65 0.46 0.52 16 16 N -0.95 -61.63 13.96 21.45 0.30 -61.33 16 17 Si 0.95 45.73 27.47 68.60 1.88 47.61 16 18 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 19 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 20 H -0.25 -11.10 6.54 99.48 0.65 -10.45 16 21 C 0.05 1.33 4.71 86.32 0.41 1.73 16 22 C -0.09 -2.00 4.92 30.64 0.15 -1.85 16 23 H 0.05 0.64 6.60 -2.38 -0.02 0.63 16 24 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.05 0.65 6.31 -2.39 -0.02 0.63 16 26 H 0.06 0.62 6.55 -2.39 -0.02 0.60 16 27 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.39 2.31 9.12 -74.06 -0.68 1.64 16 29 H 0.09 1.02 6.46 -2.39 -0.02 1.00 16 30 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.03 0.59 7.76 -2.39 -0.02 0.57 16 32 H 0.08 1.54 8.12 -2.39 -0.02 1.52 16 33 H 0.03 0.74 8.08 -2.39 -0.02 0.72 16 34 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.06 1.94 6.21 -2.38 -0.01 1.92 16 37 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.05 2.06 8.14 -2.38 -0.02 2.05 16 39 H 0.02 0.78 7.20 -2.39 -0.02 0.77 16 40 H 0.02 0.91 7.57 -2.39 -0.02 0.89 16 41 H 0.27 15.98 8.31 -92.71 -0.77 15.21 16 42 H 0.08 2.10 5.81 -2.39 -0.01 2.08 16 43 H 0.02 0.62 7.76 -2.38 -0.02 0.61 16 44 H 0.07 1.65 7.75 -2.38 -0.02 1.63 16 45 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -73.11 341.54 -0.73 -73.83 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: 0.22 Total: 11.04 kcal Atomic # 6 Polarization: -36.77 SS G_CDS: 4.28 Total: -32.50 kcal Atomic # 7 Polarization: -74.99 SS G_CDS: -4.01 Total: -79.00 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: -3.10 Total: -20.99 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 1.88 Total: 47.61 kcal Total: -73.11 -0.73 -73.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401780317.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.567 kcal (2) G-P(sol) polarization free energy of solvation -73.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds