Wall clock time and date at job start Mon Mar 30 2020 05:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 113.99613 * 2 1 4 4 C 1.53001 * 109.47309 * 55.13548 * 3 2 1 5 5 C 1.53006 * 109.47289 * 175.13174 * 3 2 1 6 6 H 1.08996 * 109.47393 * 180.02562 * 5 3 2 7 7 C 1.53001 * 109.46639 * 59.99964 * 5 3 2 8 8 N 1.46900 * 109.46876 * 300.00428 * 5 3 2 9 9 C 1.46894 * 110.99648 * 204.99647 * 8 5 3 10 10 C 1.52999 * 109.47162 * 179.97438 * 9 8 5 11 11 O 1.42897 * 109.47067 * 65.00067 * 10 9 8 12 12 C 1.42904 * 114.00046 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47278 * 179.97438 * 12 11 10 14 14 H 1.07994 * 120.00072 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00088 * 179.97438 * 13 12 11 16 16 N 1.31513 * 120.00004 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00078 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47185 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47491 * 120.00162 * 17 15 13 20 20 H 1.48499 * 109.46952 * 240.00273 * 17 15 13 21 21 C 1.52997 * 109.47361 * 295.13295 * 3 2 1 22 22 C 1.53006 * 117.50014 * 135.92391 * 21 3 2 23 23 C 1.52998 * 59.99981 * 252.51248 * 22 21 3 24 24 H 1.09001 * 109.46886 * 188.43330 * 1 2 3 25 25 H 1.09005 * 109.47199 * 308.43137 * 1 2 3 26 26 H 1.08998 * 109.46888 * 68.43320 * 1 2 3 27 27 H 1.08996 * 109.47271 * 179.97438 * 4 3 2 28 28 H 1.09002 * 109.46959 * 299.99639 * 4 3 2 29 29 H 1.09000 * 109.47252 * 59.99905 * 4 3 2 30 30 H 1.08996 * 109.47271 * 300.00127 * 7 5 3 31 31 H 1.09000 * 109.47252 * 60.00119 * 7 5 3 32 32 H 1.09002 * 109.46959 * 180.02562 * 7 5 3 33 33 H 1.00894 * 111.00127 * 328.94507 * 8 5 3 34 34 H 1.09002 * 109.47295 * 299.99757 * 9 8 5 35 35 H 1.08998 * 109.47424 * 59.99896 * 9 8 5 36 36 H 1.09009 * 109.47316 * 185.00032 * 10 9 8 37 37 H 1.09001 * 109.47217 * 305.00014 * 10 9 8 38 38 H 1.09000 * 109.47082 * 299.99667 * 12 11 10 39 39 H 1.08999 * 109.47362 * 59.99617 * 12 11 10 40 40 H 0.97004 * 120.00012 * 179.97438 * 16 15 13 41 41 H 1.09002 * 115.55224 * 281.63283 * 21 3 2 42 42 H 1.09002 * 117.50133 * 0.02562 * 22 21 3 43 43 H 1.09002 * 117.49467 * 145.02004 * 22 21 3 44 44 H 1.09002 * 117.49929 * 252.51071 * 23 22 21 45 45 H 1.09002 * 117.49665 * 107.49510 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4643 2.1068 1.1836 5 6 3.5307 1.1869 0.1224 6 1 3.9739 2.1827 0.1229 7 6 4.0766 0.3856 -1.0611 8 7 3.8689 0.5003 1.3763 9 6 5.2167 0.8676 1.8305 10 6 5.5321 0.1349 3.1361 11 8 5.5858 -1.2720 2.8919 12 6 5.8752 -2.0529 4.0531 13 6 5.9067 -3.5130 3.6816 14 1 5.7243 -3.8145 2.6608 15 6 6.1692 -4.4640 4.6448 16 7 6.3918 -4.0968 5.8879 17 14 6.2089 -6.2738 4.1841 18 1 5.9281 -6.4216 2.7334 19 1 7.5505 -6.8329 4.4886 20 1 5.1789 -7.0058 4.9642 21 6 1.6579 2.0206 -1.3059 22 6 1.2144 3.4821 -1.2137 23 6 0.1912 2.3909 -1.5351 24 1 -0.3633 -1.0166 0.1507 25 1 -0.3634 0.6388 0.8051 26 1 -0.3633 0.3778 -0.9557 27 1 1.9079 3.1024 1.1838 28 1 0.3810 2.1913 1.0964 29 1 1.7153 1.5974 2.1139 30 1 3.6333 -0.6101 -1.0612 31 1 3.8256 0.8951 -1.9915 32 1 5.1598 0.3008 -0.9737 33 1 3.1821 0.6919 2.0901 34 1 5.9455 0.5862 1.0704 35 1 5.2631 1.9436 1.9978 36 1 6.4945 0.4741 3.5198 37 1 4.7537 0.3470 3.8690 38 1 6.8445 -1.7593 4.4562 39 1 5.1036 -1.8861 4.8047 40 1 6.5761 -4.7659 6.5656 41 1 2.2446 1.7264 -2.1761 42 1 1.1739 3.9342 -0.2227 43 1 1.5095 4.1496 -2.0233 44 1 -0.1870 2.3406 -2.5562 45 1 -0.5228 2.1251 -0.7556 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411965785.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:45 Heat of formation + Delta-G solvation = -56.705255 kcal Electronic energy + Delta-G solvation = -21869.444895 eV Core-core repulsion = 18695.659334 eV Total energy + Delta-G solvation = -3173.785561 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.35385 -37.13409 -36.04090 -35.62820 -32.70556 -31.55981 -29.83678 -27.92909 -27.01727 -26.32925 -24.26180 -22.71174 -22.28272 -21.95743 -21.01952 -19.24279 -16.97539 -16.54655 -16.18664 -15.75480 -15.50071 -15.23577 -14.81656 -14.47817 -14.17485 -13.95280 -13.69281 -13.36531 -12.86731 -12.62221 -12.47634 -12.38078 -12.15154 -11.99746 -11.75931 -11.40960 -11.36947 -11.22131 -10.95227 -10.85594 -10.70651 -10.65750 -10.38003 -10.32879 -10.13069 -9.87901 -9.40628 -8.97219 -8.71036 -8.05706 -7.99465 -6.01790 -4.01964 3.36020 3.36370 3.42064 3.50186 3.86657 4.13814 4.44002 4.50139 4.60431 4.65798 4.71119 4.81207 4.97938 5.04966 5.22698 5.27541 5.34845 5.36708 5.38710 5.45108 5.51223 5.57102 5.67914 5.71390 5.75733 5.75799 5.79298 5.80726 5.92925 6.04667 6.11960 6.16474 6.20494 6.41932 6.63275 7.19403 7.21869 7.40572 7.53948 7.71108 7.91455 8.27455 8.73117 9.13938 9.62666 11.10079 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.026409 B = 0.003634 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.002367 B = 7703.492272 C = 8125.641014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.349 6.349 3 C 0.146 3.854 4 C -0.193 4.193 5 C 0.106 3.894 6 H 0.049 0.951 7 C -0.137 4.137 8 N -0.663 5.663 9 C 0.064 3.936 10 C 0.066 3.934 11 O -0.378 6.378 12 C 0.193 3.807 13 C -0.507 4.507 14 H 0.068 0.932 15 C 0.054 3.946 16 N -0.902 5.902 17 Si 0.906 3.094 18 H -0.270 1.270 19 H -0.284 1.284 20 H -0.283 1.283 21 C -0.175 4.175 22 C -0.180 4.180 23 C -0.183 4.183 24 H 0.081 0.919 25 H 0.041 0.959 26 H 0.049 0.951 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.049 0.951 32 H 0.054 0.946 33 H 0.339 0.661 34 H 0.078 0.922 35 H 0.030 0.970 36 H 0.039 0.961 37 H 0.032 0.968 38 H 0.001 0.999 39 H 0.003 0.997 40 H 0.262 0.738 41 H 0.114 0.886 42 H 0.100 0.900 43 H 0.093 0.907 44 H 0.095 0.905 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.625 16.917 -13.184 24.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.267 6.267 3 C 0.106 3.894 4 C -0.250 4.250 5 C -0.004 4.004 6 H 0.067 0.933 7 C -0.195 4.195 8 N -0.297 5.297 9 C -0.065 4.065 10 C -0.012 4.012 11 O -0.297 6.297 12 C 0.119 3.881 13 C -0.545 4.545 14 H 0.086 0.914 15 C -0.147 4.147 16 N -0.542 5.542 17 Si 0.734 3.266 18 H -0.194 1.194 19 H -0.210 1.210 20 H -0.209 1.209 21 C -0.194 4.194 22 C -0.217 4.217 23 C -0.219 4.219 24 H 0.100 0.900 25 H 0.060 0.940 26 H 0.067 0.933 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.160 0.840 34 H 0.096 0.904 35 H 0.048 0.952 36 H 0.057 0.943 37 H 0.050 0.950 38 H 0.019 0.981 39 H 0.020 0.980 40 H 0.071 0.929 41 H 0.132 0.868 42 H 0.118 0.882 43 H 0.112 0.888 44 H 0.113 0.887 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -11.287 16.004 -13.489 23.780 hybrid contribution -0.285 0.354 0.583 0.740 sum -11.572 16.358 -12.906 23.834 Atomic orbital electron populations 1.23080 0.82557 1.02550 1.00019 1.88171 1.18479 1.25493 1.94555 1.21031 0.93584 0.83461 0.91369 1.22651 1.02002 1.00943 0.99381 1.21410 0.90858 0.95625 0.92516 0.93347 1.21770 1.00943 1.01563 0.95235 1.60316 1.03144 1.61171 1.05078 1.22048 0.91530 0.95230 0.97689 1.22213 0.98341 0.85768 0.94887 1.87976 1.92087 1.13639 1.36002 1.20179 0.94175 0.90458 0.83317 1.21125 1.47347 0.89963 0.96085 0.91404 1.24949 0.95364 0.99630 0.94725 1.69982 1.48917 1.33981 1.01286 0.86297 0.77498 0.84006 0.78810 1.19410 1.20965 1.20929 1.23007 0.98239 0.97661 1.00486 1.23121 1.03976 0.91333 1.03306 1.23147 0.92330 1.03593 1.02867 0.90010 0.94042 0.93303 0.91176 0.91545 0.91057 0.90787 0.93215 0.92712 0.84006 0.90364 0.95198 0.94333 0.94988 0.98081 0.97966 0.92876 0.86769 0.88205 0.88830 0.88683 0.88276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.25 101.05 0.93 1.08 16 2 O -0.35 -4.77 9.54 -35.23 -0.34 -5.11 16 3 C 0.15 1.64 0.49 -90.62 -0.04 1.59 16 4 C -0.19 -1.86 6.60 37.16 0.25 -1.61 16 5 C 0.11 1.35 2.01 -67.71 -0.14 1.22 16 6 H 0.05 0.56 7.80 -51.93 -0.40 0.16 16 7 C -0.14 -1.83 9.01 37.16 0.33 -1.49 16 8 N -0.66 -10.44 6.12 -106.73 -0.65 -11.10 16 9 C 0.06 1.01 5.87 -3.83 -0.02 0.98 16 10 C 0.07 1.28 6.22 37.16 0.23 1.51 16 11 O -0.38 -9.62 10.27 -35.23 -0.36 -9.98 16 12 C 0.19 5.53 5.69 36.00 0.20 5.74 16 13 C -0.51 -15.55 9.43 -34.44 -0.32 -15.88 16 14 H 0.07 2.09 7.81 -52.49 -0.41 1.68 16 15 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -27.76 13.29 55.43 0.74 -27.02 16 17 Si 0.91 22.59 29.54 -169.99 -5.02 17.57 16 18 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 20 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 21 C -0.18 -1.63 4.97 -90.62 -0.45 -2.08 16 22 C -0.18 -1.36 9.69 -26.73 -0.26 -1.62 16 23 C -0.18 -1.41 7.83 -26.73 -0.21 -1.62 16 24 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.04 0.38 5.73 -51.93 -0.30 0.08 16 26 H 0.05 0.44 5.33 -51.93 -0.28 0.16 16 27 H 0.07 0.59 6.65 -51.93 -0.35 0.24 16 28 H 0.07 0.57 5.12 -51.93 -0.27 0.30 16 29 H 0.07 0.77 6.21 -51.93 -0.32 0.44 16 30 H 0.07 1.16 7.68 -51.93 -0.40 0.76 16 31 H 0.05 0.54 6.21 -51.93 -0.32 0.22 16 32 H 0.05 0.75 7.45 -51.93 -0.39 0.36 16 33 H 0.34 5.15 6.16 -39.30 -0.24 4.91 16 34 H 0.08 1.27 7.44 -51.93 -0.39 0.89 16 35 H 0.03 0.39 8.05 -51.93 -0.42 -0.03 16 36 H 0.04 0.71 8.14 -51.92 -0.42 0.28 16 37 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.00 0.04 8.14 -51.93 -0.42 -0.38 16 39 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 40 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 41 H 0.11 1.10 6.19 -51.93 -0.32 0.78 16 42 H 0.10 0.71 5.89 -51.93 -0.31 0.41 16 43 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.10 0.74 5.14 -51.93 -0.27 0.47 16 LS Contribution 342.78 15.07 5.17 5.17 Total: -1.00 -33.29 342.78 -7.53 -40.82 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -7.47 Total: 0.34 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: 0.41 Total: -10.68 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: 0.08 Total: -38.12 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -0.70 Total: -15.09 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.29 -7.53 -40.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411965785.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.889 kcal (2) G-P(sol) polarization free energy of solvation -33.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds