Wall clock time and date at job start Mon Mar 30 2020 05:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 113.99613 * 2 1 4 4 C 1.53001 * 109.47309 * 55.13548 * 3 2 1 5 5 C 1.53006 * 109.47289 * 175.13174 * 3 2 1 6 6 H 1.08996 * 109.47393 * 180.02562 * 5 3 2 7 7 C 1.53001 * 109.46639 * 59.99964 * 5 3 2 8 8 N 1.46900 * 109.46876 * 300.00428 * 5 3 2 9 9 C 1.46894 * 110.99648 * 204.99647 * 8 5 3 10 10 C 1.52999 * 109.47162 * 179.97438 * 9 8 5 11 11 O 1.42897 * 109.47067 * 65.00067 * 10 9 8 12 12 C 1.42904 * 114.00046 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47278 * 179.97438 * 12 11 10 14 14 H 1.07994 * 120.00072 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00088 * 179.97438 * 13 12 11 16 16 N 1.31513 * 120.00004 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00078 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47185 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47491 * 120.00162 * 17 15 13 20 20 H 1.48499 * 109.46952 * 240.00273 * 17 15 13 21 21 C 1.52997 * 109.47361 * 295.13295 * 3 2 1 22 22 C 1.53006 * 117.50014 * 135.92391 * 21 3 2 23 23 C 1.52998 * 59.99981 * 252.51248 * 22 21 3 24 24 H 1.09001 * 109.46886 * 188.43330 * 1 2 3 25 25 H 1.09005 * 109.47199 * 308.43137 * 1 2 3 26 26 H 1.08998 * 109.46888 * 68.43320 * 1 2 3 27 27 H 1.08996 * 109.47271 * 179.97438 * 4 3 2 28 28 H 1.09002 * 109.46959 * 299.99639 * 4 3 2 29 29 H 1.09000 * 109.47252 * 59.99905 * 4 3 2 30 30 H 1.08996 * 109.47271 * 300.00127 * 7 5 3 31 31 H 1.09000 * 109.47252 * 60.00119 * 7 5 3 32 32 H 1.09002 * 109.46959 * 180.02562 * 7 5 3 33 33 H 1.00894 * 111.00127 * 328.94507 * 8 5 3 34 34 H 1.09002 * 109.47295 * 299.99757 * 9 8 5 35 35 H 1.08998 * 109.47424 * 59.99896 * 9 8 5 36 36 H 1.09009 * 109.47316 * 185.00032 * 10 9 8 37 37 H 1.09001 * 109.47217 * 305.00014 * 10 9 8 38 38 H 1.09000 * 109.47082 * 299.99667 * 12 11 10 39 39 H 1.08999 * 109.47362 * 59.99617 * 12 11 10 40 40 H 0.97004 * 120.00012 * 179.97438 * 16 15 13 41 41 H 1.09002 * 115.55224 * 281.63283 * 21 3 2 42 42 H 1.09002 * 117.50133 * 0.02562 * 22 21 3 43 43 H 1.09002 * 117.49467 * 145.02004 * 22 21 3 44 44 H 1.09002 * 117.49929 * 252.51071 * 23 22 21 45 45 H 1.09002 * 117.49665 * 107.49510 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4643 2.1068 1.1836 5 6 3.5307 1.1869 0.1224 6 1 3.9739 2.1827 0.1229 7 6 4.0766 0.3856 -1.0611 8 7 3.8689 0.5003 1.3763 9 6 5.2167 0.8676 1.8305 10 6 5.5321 0.1349 3.1361 11 8 5.5858 -1.2720 2.8919 12 6 5.8752 -2.0529 4.0531 13 6 5.9067 -3.5130 3.6816 14 1 5.7243 -3.8145 2.6608 15 6 6.1692 -4.4640 4.6448 16 7 6.3918 -4.0968 5.8879 17 14 6.2089 -6.2738 4.1841 18 1 5.9281 -6.4216 2.7334 19 1 7.5505 -6.8329 4.4886 20 1 5.1789 -7.0058 4.9642 21 6 1.6579 2.0206 -1.3059 22 6 1.2144 3.4821 -1.2137 23 6 0.1912 2.3909 -1.5351 24 1 -0.3633 -1.0166 0.1507 25 1 -0.3634 0.6388 0.8051 26 1 -0.3633 0.3778 -0.9557 27 1 1.9079 3.1024 1.1838 28 1 0.3810 2.1913 1.0964 29 1 1.7153 1.5974 2.1139 30 1 3.6333 -0.6101 -1.0612 31 1 3.8256 0.8951 -1.9915 32 1 5.1598 0.3008 -0.9737 33 1 3.1821 0.6919 2.0901 34 1 5.9455 0.5862 1.0704 35 1 5.2631 1.9436 1.9978 36 1 6.4945 0.4741 3.5198 37 1 4.7537 0.3470 3.8690 38 1 6.8445 -1.7593 4.4562 39 1 5.1036 -1.8861 4.8047 40 1 6.5761 -4.7659 6.5656 41 1 2.2446 1.7264 -2.1761 42 1 1.1739 3.9342 -0.2227 43 1 1.5095 4.1496 -2.0233 44 1 -0.1870 2.3406 -2.5562 45 1 -0.5228 2.1251 -0.7556 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411965785.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:45 Heat of formation + Delta-G solvation = -80.051613 kcal Electronic energy + Delta-G solvation = -21870.457269 eV Core-core repulsion = 18695.659334 eV Total energy + Delta-G solvation = -3174.797935 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.17439 -38.77776 -37.10987 -36.72170 -34.91429 -32.82624 -30.71106 -29.74000 -28.16327 -27.82706 -25.05206 -24.48005 -23.33418 -23.24433 -22.13336 -20.06928 -18.64987 -17.81915 -17.53366 -17.28450 -16.63268 -16.49683 -16.31181 -15.83078 -15.38680 -15.13808 -15.02911 -14.60541 -14.29935 -13.93102 -13.60914 -13.39671 -13.20108 -13.11212 -12.93002 -12.83044 -12.81459 -12.59388 -12.37581 -12.29694 -12.08024 -11.82598 -11.78045 -11.52181 -11.23264 -11.05508 -10.91921 -10.84520 -10.23281 -10.16538 -9.15900 -8.31135 -6.42680 1.39576 1.41438 1.56726 2.36366 2.67061 3.02226 3.09402 3.15612 3.28289 3.73734 3.76817 3.87955 4.05057 4.13770 4.19472 4.27450 4.35844 4.43245 4.47583 4.55167 4.60492 4.64351 4.68064 4.73174 4.79437 4.83391 4.86366 4.90447 4.95977 4.97707 5.05949 5.09970 5.17507 5.20685 5.24766 5.35469 5.51573 5.57258 5.99111 6.18582 6.46347 6.54517 6.60850 6.89071 7.29657 8.81560 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.026409 B = 0.003634 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.002367 B = 7703.492272 C = 8125.641014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.386 6.386 3 C 0.145 3.855 4 C -0.189 4.189 5 C 0.105 3.895 6 H 0.068 0.932 7 C -0.133 4.133 8 N -0.689 5.689 9 C 0.074 3.926 10 C 0.056 3.944 11 O -0.396 6.396 12 C 0.209 3.791 13 C -0.545 4.545 14 H 0.057 0.943 15 C 0.006 3.994 16 N -0.931 5.931 17 Si 0.983 3.017 18 H -0.267 1.267 19 H -0.269 1.269 20 H -0.270 1.270 21 C -0.190 4.190 22 C -0.168 4.168 23 C -0.179 4.179 24 H 0.076 0.924 25 H 0.052 0.948 26 H 0.064 0.936 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.056 0.944 30 H 0.042 0.958 31 H 0.073 0.927 32 H 0.044 0.956 33 H 0.340 0.660 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.048 0.952 37 H 0.037 0.963 38 H -0.015 1.015 39 H -0.018 1.018 40 H 0.271 0.729 41 H 0.109 0.891 42 H 0.106 0.894 43 H 0.105 0.895 44 H 0.104 0.896 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.367 17.778 -14.058 25.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.305 6.305 3 C 0.106 3.894 4 C -0.246 4.246 5 C -0.004 4.004 6 H 0.086 0.914 7 C -0.191 4.191 8 N -0.324 5.324 9 C -0.055 4.055 10 C -0.022 4.022 11 O -0.316 6.316 12 C 0.134 3.866 13 C -0.583 4.583 14 H 0.075 0.925 15 C -0.192 4.192 16 N -0.571 5.571 17 Si 0.806 3.194 18 H -0.191 1.191 19 H -0.194 1.194 20 H -0.195 1.195 21 C -0.209 4.209 22 C -0.204 4.204 23 C -0.216 4.216 24 H 0.095 0.905 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.104 0.896 28 H 0.096 0.904 29 H 0.075 0.925 30 H 0.061 0.939 31 H 0.092 0.908 32 H 0.063 0.937 33 H 0.161 0.839 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.067 0.933 37 H 0.055 0.945 38 H 0.002 0.998 39 H 0.000 1.000 40 H 0.079 0.921 41 H 0.127 0.873 42 H 0.124 0.876 43 H 0.123 0.877 44 H 0.122 0.878 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -12.034 16.897 -14.368 25.234 hybrid contribution -0.068 0.167 0.857 0.876 sum -12.102 17.064 -13.510 24.903 Atomic orbital electron populations 1.23194 0.81267 1.02733 1.01268 1.88115 1.20128 1.27356 1.94880 1.21053 0.92306 0.83009 0.93055 1.22625 1.02846 1.01229 0.97920 1.21485 0.92467 0.95874 0.90596 0.91435 1.21729 0.99999 1.00368 0.97002 1.60256 1.03097 1.62765 1.06276 1.21947 0.91573 0.96642 0.95291 1.22596 0.99182 0.82816 0.97585 1.87932 1.92060 1.16831 1.34777 1.19792 0.92458 0.90604 0.83783 1.21409 1.49279 0.91510 0.96065 0.92461 1.25957 0.93982 1.04908 0.94394 1.70076 1.48526 1.36136 1.02339 0.85139 0.78387 0.77234 0.78653 1.19116 1.19391 1.19520 1.22862 0.99629 0.99159 0.99221 1.23205 1.02711 0.90431 1.04094 1.23225 0.91542 1.03248 1.03559 0.90500 0.92917 0.91817 0.89566 0.90353 0.92532 0.93870 0.90822 0.93689 0.83882 0.91157 0.91326 0.93338 0.94480 0.99777 0.99999 0.92056 0.87348 0.87562 0.87685 0.87800 0.87954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.23 9.25 113.37 1.05 1.27 16 2 O -0.39 -10.54 9.54 -148.98 -1.42 -11.96 16 3 C 0.15 3.10 0.49 -10.79 -0.01 3.09 16 4 C -0.19 -3.32 6.60 71.98 0.48 -2.85 16 5 C 0.11 2.59 2.01 44.92 0.09 2.68 16 6 H 0.07 1.41 7.80 -2.39 -0.02 1.39 16 7 C -0.13 -3.54 9.01 71.98 0.65 -2.89 16 8 N -0.69 -21.58 6.12 -491.58 -3.01 -24.59 16 9 C 0.07 2.28 5.87 86.30 0.51 2.78 16 10 C 0.06 2.16 6.22 71.98 0.45 2.61 16 11 O -0.40 -20.81 10.27 -148.98 -1.53 -22.34 16 12 C 0.21 12.40 5.69 71.24 0.41 12.81 16 13 C -0.54 -34.29 9.43 25.60 0.24 -34.05 16 14 H 0.06 3.63 7.81 -2.91 -0.02 3.61 16 15 C 0.01 0.34 5.46 84.65 0.46 0.81 16 16 N -0.93 -57.69 13.29 21.45 0.28 -57.41 16 17 Si 0.98 46.29 29.54 68.60 2.03 48.32 16 18 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 19 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 20 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 21 C -0.19 -3.17 4.97 -10.79 -0.05 -3.22 16 22 C -0.17 -2.02 9.69 30.60 0.30 -1.72 16 23 C -0.18 -2.32 7.83 30.59 0.24 -2.08 16 24 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.05 0.91 5.73 -2.38 -0.01 0.89 16 26 H 0.06 1.05 5.33 -2.39 -0.01 1.04 16 27 H 0.09 1.21 6.65 -2.39 -0.02 1.20 16 28 H 0.08 1.17 5.12 -2.39 -0.01 1.15 16 29 H 0.06 1.17 6.21 -2.39 -0.01 1.15 16 30 H 0.04 1.40 7.68 -2.39 -0.02 1.38 16 31 H 0.07 1.55 6.21 -2.39 -0.01 1.54 16 32 H 0.04 1.24 7.45 -2.39 -0.02 1.22 16 33 H 0.34 10.31 6.16 -89.70 -0.55 9.76 16 34 H 0.07 2.26 7.44 -2.39 -0.02 2.24 16 35 H 0.07 1.59 8.05 -2.39 -0.02 1.57 16 36 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 37 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 38 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 39 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 16 40 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 41 H 0.11 1.91 6.19 -2.39 -0.01 1.90 16 42 H 0.11 1.15 5.89 -2.39 -0.01 1.14 16 43 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.10 1.26 5.14 -2.39 -0.01 1.25 16 Total: -1.00 -72.77 342.78 1.57 -71.20 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: 0.42 Total: 17.54 kcal Atomic # 6 Polarization: -25.56 SS G_CDS: 4.80 Total: -20.76 kcal Atomic # 7 Polarization: -79.27 SS G_CDS: -2.73 Total: -82.00 kcal Atomic # 8 Polarization: -31.34 SS G_CDS: -2.95 Total: -34.29 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Total: -72.77 1.57 -71.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411965785.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.855 kcal (2) G-P(sol) polarization free energy of solvation -72.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds