Wall clock time and date at job start Mon Mar 30 2020 05:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 113.99694 * 2 1 4 4 C 1.53009 * 109.46715 * 181.00932 * 3 2 1 5 5 C 1.52997 * 109.47577 * 301.00995 * 3 2 1 6 6 H 1.09002 * 109.46797 * 59.15048 * 5 3 2 7 7 C 1.52994 * 109.47066 * 179.14682 * 5 3 2 8 8 N 1.46902 * 109.47293 * 299.14634 * 5 3 2 9 9 C 1.46900 * 110.99906 * 154.82652 * 8 5 3 10 10 C 1.52998 * 109.46766 * 180.02562 * 9 8 5 11 11 O 1.42900 * 109.47551 * 65.00321 * 10 9 8 12 12 C 1.42892 * 114.00239 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.47088 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00059 * 359.97438 * 13 12 11 15 15 C 1.37882 * 120.00321 * 180.02562 * 13 12 11 16 16 N 1.31508 * 120.00651 * 179.97438 * 15 13 12 17 17 Si 1.86808 * 119.99485 * 359.97438 * 15 13 12 18 18 H 1.48496 * 109.46925 * 90.00041 * 17 15 13 19 19 H 1.48498 * 109.46850 * 209.99835 * 17 15 13 20 20 H 1.48500 * 109.47128 * 329.99938 * 17 15 13 21 21 C 1.52998 * 109.47054 * 61.01498 * 3 2 1 22 22 C 1.53001 * 117.50452 * 129.73009 * 21 3 2 23 23 C 1.53000 * 60.00021 * 252.51269 * 22 21 3 24 24 H 1.08992 * 109.47601 * 65.37305 * 1 2 3 25 25 H 1.09008 * 109.46960 * 185.37720 * 1 2 3 26 26 H 1.09001 * 109.46641 * 305.37071 * 1 2 3 27 27 H 1.09004 * 109.46681 * 180.02562 * 4 3 2 28 28 H 1.08993 * 109.47091 * 300.00338 * 4 3 2 29 29 H 1.09003 * 109.46963 * 60.00842 * 4 3 2 30 30 H 1.08997 * 109.47417 * 300.00365 * 7 5 3 31 31 H 1.09002 * 109.47440 * 60.00172 * 7 5 3 32 32 H 1.09003 * 109.47167 * 179.97438 * 7 5 3 33 33 H 1.00909 * 110.99422 * 30.87737 * 8 5 3 34 34 H 1.09004 * 109.47009 * 300.00231 * 9 8 5 35 35 H 1.09002 * 109.47001 * 60.00339 * 9 8 5 36 36 H 1.09008 * 109.46976 * 185.00154 * 10 9 8 37 37 H 1.08995 * 109.47566 * 304.99727 * 10 9 8 38 38 H 1.09000 * 109.47418 * 299.99322 * 12 11 10 39 39 H 1.09000 * 109.47660 * 59.99794 * 12 11 10 40 40 H 0.96995 * 120.00298 * 180.02562 * 16 15 13 41 41 H 1.08997 * 115.54694 * 275.44122 * 21 3 2 42 42 H 1.09004 * 117.49374 * 0.02562 * 22 21 3 43 43 H 1.08992 * 117.50217 * 145.01590 * 22 21 3 44 44 H 1.08996 * 117.49441 * 252.50759 * 23 22 21 45 45 H 1.08997 * 117.51641 * 107.48195 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5352 1.1847 -0.0254 5 6 1.5387 2.0737 -1.2363 6 1 0.4512 2.1466 -1.2259 7 6 2.1441 3.4787 -1.2251 8 7 1.9705 1.3641 -2.4479 9 6 1.0928 1.6787 -3.5831 10 6 1.5727 0.9224 -4.8235 11 8 1.4265 -0.4831 -4.6109 12 6 1.8480 -1.2851 -5.7158 13 6 1.6511 -2.7417 -5.3833 14 1 1.2450 -3.0265 -4.4240 15 6 1.9902 -3.7109 -6.3035 16 7 1.8188 -4.9821 -6.0132 17 14 2.6932 -3.2183 -7.9627 18 1 4.1732 -3.1406 -7.8697 19 1 2.3136 -4.2301 -8.9812 20 1 2.1516 -1.8927 -8.3559 21 6 1.5790 2.0557 1.2618 22 6 2.6745 2.7210 2.0974 23 6 1.9812 1.4576 2.6114 24 1 -0.3634 0.4282 -0.9341 25 1 -0.3633 -1.0232 0.0963 26 1 -0.3633 0.5949 0.8380 27 1 3.9786 2.1806 -0.0250 28 1 3.8711 0.6374 0.8553 29 1 3.8425 0.6503 -0.9244 30 1 1.8238 4.0053 -0.3261 31 1 3.2316 3.4060 -1.2355 32 1 1.8086 4.0259 -2.1062 33 1 2.0125 0.3686 -2.2883 34 1 0.0718 1.3783 -3.3472 35 1 1.1204 2.7509 -3.7775 36 1 0.9771 1.2233 -5.6856 37 1 2.6215 1.1549 -5.0077 38 1 1.2578 -1.0300 -6.5960 39 1 2.9026 -1.0985 -5.9189 40 1 2.0578 -5.6639 -6.6604 41 1 0.6146 2.5602 1.2023 42 1 3.7024 2.6245 1.7479 43 1 2.4311 3.6635 2.5875 44 1 1.2817 1.5691 3.4399 45 1 2.5528 0.5296 2.6004 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411965790.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:55 Heat of formation + Delta-G solvation = -66.207513 kcal Electronic energy + Delta-G solvation = -22099.555176 eV Core-core repulsion = 18925.357566 eV Total energy + Delta-G solvation = -3174.197610 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.21207 -37.28851 -36.29297 -35.50734 -32.72500 -31.85843 -29.41117 -28.28481 -26.87890 -26.20498 -25.19956 -22.50039 -22.14530 -21.79963 -20.95536 -18.81388 -16.91789 -16.78140 -16.51133 -15.99637 -15.58858 -15.15527 -15.01861 -14.49943 -14.37802 -13.83296 -13.59105 -13.31006 -13.08290 -12.58114 -12.43978 -12.21351 -12.05385 -11.95977 -11.76499 -11.63817 -11.59902 -11.30955 -11.08949 -10.91679 -10.74684 -10.63440 -10.48665 -10.43279 -10.19737 -9.84021 -9.40567 -9.15444 -8.82038 -8.44051 -8.20192 -6.08852 -4.07615 3.27101 3.33722 3.35377 3.44230 3.97398 4.16835 4.38020 4.55751 4.66597 4.71950 4.79200 4.86624 5.01918 5.13037 5.22697 5.29655 5.39812 5.43022 5.46021 5.51951 5.56494 5.65073 5.70693 5.72243 5.74128 5.82687 5.87055 5.93834 5.95097 5.96577 6.02899 6.09036 6.24515 6.27861 6.41708 6.64245 7.03229 7.23236 7.27394 7.62137 7.72851 8.04624 8.69427 9.02763 9.50614 11.04224 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.026877 B = 0.003966 C = 0.003713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.525086 B = 7058.916238 C = 7540.208203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.368 6.368 3 C 0.144 3.856 4 C -0.137 4.137 5 C 0.063 3.937 6 H 0.042 0.958 7 C -0.137 4.137 8 N -0.677 5.677 9 C 0.067 3.933 10 C 0.058 3.942 11 O -0.382 6.382 12 C 0.171 3.829 13 C -0.518 4.518 14 H 0.082 0.918 15 C 0.072 3.928 16 N -0.896 5.896 17 Si 0.876 3.124 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.267 1.267 21 C -0.178 4.178 22 C -0.175 4.175 23 C -0.167 4.167 24 H 0.039 0.961 25 H 0.086 0.914 26 H 0.040 0.960 27 H 0.074 0.926 28 H 0.057 0.943 29 H 0.077 0.923 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.364 0.636 34 H 0.032 0.968 35 H 0.074 0.926 36 H 0.040 0.960 37 H 0.048 0.952 38 H 0.001 0.999 39 H -0.001 1.001 40 H 0.266 0.734 41 H 0.100 0.900 42 H 0.103 0.897 43 H 0.091 0.909 44 H 0.090 0.910 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.141 18.230 13.955 22.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.286 6.286 3 C 0.104 3.896 4 C -0.194 4.194 5 C -0.047 4.047 6 H 0.060 0.940 7 C -0.195 4.195 8 N -0.313 5.313 9 C -0.063 4.063 10 C -0.019 4.019 11 O -0.302 6.302 12 C 0.096 3.904 13 C -0.555 4.555 14 H 0.100 0.900 15 C -0.129 4.129 16 N -0.534 5.534 17 Si 0.703 3.297 18 H -0.199 1.199 19 H -0.208 1.208 20 H -0.192 1.192 21 C -0.197 4.197 22 C -0.211 4.211 23 C -0.204 4.204 24 H 0.058 0.942 25 H 0.104 0.896 26 H 0.059 0.941 27 H 0.093 0.907 28 H 0.076 0.924 29 H 0.096 0.904 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.186 0.814 34 H 0.050 0.950 35 H 0.092 0.908 36 H 0.058 0.942 37 H 0.066 0.934 38 H 0.019 0.981 39 H 0.017 0.983 40 H 0.076 0.924 41 H 0.118 0.882 42 H 0.122 0.878 43 H 0.109 0.891 44 H 0.109 0.891 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.383 18.236 13.868 22.914 hybrid contribution -0.722 0.010 -0.998 1.232 sum -0.339 18.246 12.870 22.331 Atomic orbital electron populations 1.22717 0.81562 1.02803 0.99625 1.88043 1.19472 1.26593 1.94541 1.21103 0.94731 0.82727 0.91040 1.21849 0.91772 1.02459 1.03313 1.21991 0.97354 0.95064 0.90323 0.94014 1.21816 1.01927 0.94871 1.00892 1.60568 1.51705 1.15774 1.03204 1.21962 0.94476 0.98750 0.91082 1.22366 0.99541 0.84369 0.95666 1.87862 1.86082 1.14017 1.42206 1.20565 0.93040 0.91590 0.85192 1.20895 1.43122 0.87379 1.04149 0.89992 1.24762 0.95271 0.94685 0.98225 1.69873 1.48193 0.99570 1.35800 0.86853 0.79973 0.78756 0.84167 1.19898 1.20843 1.19157 1.22786 0.99781 1.04338 0.92785 1.23107 0.98013 0.96705 1.03314 1.22872 1.03625 0.97799 0.96079 0.94228 0.89554 0.94125 0.90705 0.92404 0.90370 0.92616 0.91577 0.92926 0.81438 0.94974 0.90758 0.94155 0.93407 0.98142 0.98331 0.92404 0.88171 0.87848 0.89080 0.89130 0.88270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.23 101.05 1.03 1.40 16 2 O -0.37 -5.32 9.45 -35.23 -0.33 -5.66 16 3 C 0.14 1.70 0.37 -90.62 -0.03 1.67 16 4 C -0.14 -1.59 6.95 37.16 0.26 -1.34 16 5 C 0.06 0.77 1.55 -67.72 -0.11 0.66 16 6 H 0.04 0.52 6.26 -51.93 -0.32 0.20 16 7 C -0.14 -1.40 8.83 37.15 0.33 -1.08 16 8 N -0.68 -10.12 5.58 -106.73 -0.60 -10.72 16 9 C 0.07 1.00 5.90 -3.83 -0.02 0.97 16 10 C 0.06 1.05 6.28 37.16 0.23 1.28 16 11 O -0.38 -8.98 9.84 -35.23 -0.35 -9.33 16 12 C 0.17 4.43 4.76 36.01 0.17 4.61 16 13 C -0.52 -15.60 9.99 -34.44 -0.34 -15.95 16 14 H 0.08 2.70 8.06 -52.49 -0.42 2.28 16 15 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 16 N -0.90 -27.94 13.96 55.43 0.77 -27.17 16 17 Si 0.88 21.70 27.47 -169.99 -4.67 17.03 16 18 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 21 C -0.18 -1.73 2.70 -90.62 -0.24 -1.97 16 22 C -0.17 -1.42 9.54 -26.73 -0.26 -1.68 16 23 C -0.17 -1.51 9.81 -26.73 -0.26 -1.77 16 24 H 0.04 0.52 6.68 -51.93 -0.35 0.17 16 25 H 0.09 1.06 8.14 -51.92 -0.42 0.63 16 26 H 0.04 0.43 6.87 -51.93 -0.36 0.07 16 27 H 0.07 0.74 5.23 -51.93 -0.27 0.47 16 28 H 0.06 0.64 7.05 -51.93 -0.37 0.28 16 29 H 0.08 1.07 7.42 -51.93 -0.39 0.69 16 30 H 0.05 0.49 7.15 -51.93 -0.37 0.12 16 31 H 0.07 0.69 6.45 -51.93 -0.33 0.35 16 32 H 0.05 0.54 7.46 -51.93 -0.39 0.15 16 33 H 0.36 6.47 7.02 -39.29 -0.28 6.19 16 34 H 0.03 0.50 8.06 -51.93 -0.42 0.08 16 35 H 0.07 0.94 7.45 -51.93 -0.39 0.55 16 36 H 0.04 0.68 8.14 -51.92 -0.42 0.25 16 37 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.00 0.02 7.20 -51.93 -0.37 -0.35 16 39 H 0.00 -0.03 7.57 -51.93 -0.39 -0.42 16 40 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 41 H 0.10 0.94 7.91 -51.93 -0.41 0.53 16 42 H 0.10 0.83 5.86 -51.93 -0.30 0.52 16 43 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.10 0.99 7.54 -51.93 -0.39 0.60 16 LS Contribution 345.67 15.07 5.21 5.21 Total: -1.00 -31.66 345.67 -7.10 -38.77 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -7.80 Total: 2.99 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: 0.66 Total: -11.13 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: 0.18 Total: -37.89 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: -0.68 Total: -14.99 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.66 -7.10 -38.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411965790.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.439 kcal (2) G-P(sol) polarization free energy of solvation -31.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds