Wall clock time and date at job start Mon Mar 30 2020 05:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 113.99694 * 2 1 4 4 C 1.53009 * 109.46715 * 181.00932 * 3 2 1 5 5 C 1.52997 * 109.47577 * 301.00995 * 3 2 1 6 6 H 1.09002 * 109.46797 * 59.15048 * 5 3 2 7 7 C 1.52994 * 109.47066 * 179.14682 * 5 3 2 8 8 N 1.46902 * 109.47293 * 299.14634 * 5 3 2 9 9 C 1.46900 * 110.99906 * 154.82652 * 8 5 3 10 10 C 1.52998 * 109.46766 * 180.02562 * 9 8 5 11 11 O 1.42900 * 109.47551 * 65.00321 * 10 9 8 12 12 C 1.42892 * 114.00239 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.47088 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00059 * 359.97438 * 13 12 11 15 15 C 1.37882 * 120.00321 * 180.02562 * 13 12 11 16 16 N 1.31508 * 120.00651 * 179.97438 * 15 13 12 17 17 Si 1.86808 * 119.99485 * 359.97438 * 15 13 12 18 18 H 1.48496 * 109.46925 * 90.00041 * 17 15 13 19 19 H 1.48498 * 109.46850 * 209.99835 * 17 15 13 20 20 H 1.48500 * 109.47128 * 329.99938 * 17 15 13 21 21 C 1.52998 * 109.47054 * 61.01498 * 3 2 1 22 22 C 1.53001 * 117.50452 * 129.73009 * 21 3 2 23 23 C 1.53000 * 60.00021 * 252.51269 * 22 21 3 24 24 H 1.08992 * 109.47601 * 65.37305 * 1 2 3 25 25 H 1.09008 * 109.46960 * 185.37720 * 1 2 3 26 26 H 1.09001 * 109.46641 * 305.37071 * 1 2 3 27 27 H 1.09004 * 109.46681 * 180.02562 * 4 3 2 28 28 H 1.08993 * 109.47091 * 300.00338 * 4 3 2 29 29 H 1.09003 * 109.46963 * 60.00842 * 4 3 2 30 30 H 1.08997 * 109.47417 * 300.00365 * 7 5 3 31 31 H 1.09002 * 109.47440 * 60.00172 * 7 5 3 32 32 H 1.09003 * 109.47167 * 179.97438 * 7 5 3 33 33 H 1.00909 * 110.99422 * 30.87737 * 8 5 3 34 34 H 1.09004 * 109.47009 * 300.00231 * 9 8 5 35 35 H 1.09002 * 109.47001 * 60.00339 * 9 8 5 36 36 H 1.09008 * 109.46976 * 185.00154 * 10 9 8 37 37 H 1.08995 * 109.47566 * 304.99727 * 10 9 8 38 38 H 1.09000 * 109.47418 * 299.99322 * 12 11 10 39 39 H 1.09000 * 109.47660 * 59.99794 * 12 11 10 40 40 H 0.96995 * 120.00298 * 180.02562 * 16 15 13 41 41 H 1.08997 * 115.54694 * 275.44122 * 21 3 2 42 42 H 1.09004 * 117.49374 * 0.02562 * 22 21 3 43 43 H 1.08992 * 117.50217 * 145.01590 * 22 21 3 44 44 H 1.08996 * 117.49441 * 252.50759 * 23 22 21 45 45 H 1.08997 * 117.51641 * 107.48195 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5352 1.1847 -0.0254 5 6 1.5387 2.0737 -1.2363 6 1 0.4512 2.1466 -1.2259 7 6 2.1441 3.4787 -1.2251 8 7 1.9705 1.3641 -2.4479 9 6 1.0928 1.6787 -3.5831 10 6 1.5727 0.9224 -4.8235 11 8 1.4265 -0.4831 -4.6109 12 6 1.8480 -1.2851 -5.7158 13 6 1.6511 -2.7417 -5.3833 14 1 1.2450 -3.0265 -4.4240 15 6 1.9902 -3.7109 -6.3035 16 7 1.8188 -4.9821 -6.0132 17 14 2.6932 -3.2183 -7.9627 18 1 4.1732 -3.1406 -7.8697 19 1 2.3136 -4.2301 -8.9812 20 1 2.1516 -1.8927 -8.3559 21 6 1.5790 2.0557 1.2618 22 6 2.6745 2.7210 2.0974 23 6 1.9812 1.4576 2.6114 24 1 -0.3634 0.4282 -0.9341 25 1 -0.3633 -1.0232 0.0963 26 1 -0.3633 0.5949 0.8380 27 1 3.9786 2.1806 -0.0250 28 1 3.8711 0.6374 0.8553 29 1 3.8425 0.6503 -0.9244 30 1 1.8238 4.0053 -0.3261 31 1 3.2316 3.4060 -1.2355 32 1 1.8086 4.0259 -2.1062 33 1 2.0125 0.3686 -2.2883 34 1 0.0718 1.3783 -3.3472 35 1 1.1204 2.7509 -3.7775 36 1 0.9771 1.2233 -5.6856 37 1 2.6215 1.1549 -5.0077 38 1 1.2578 -1.0300 -6.5960 39 1 2.9026 -1.0985 -5.9189 40 1 2.0578 -5.6639 -6.6604 41 1 0.6146 2.5602 1.2023 42 1 3.7024 2.6245 1.7479 43 1 2.4311 3.6635 2.5875 44 1 1.2817 1.5691 3.4399 45 1 2.5528 0.5296 2.6004 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411965790.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:54 Heat of formation + Delta-G solvation = -88.485294 kcal Electronic energy + Delta-G solvation = -22100.521213 eV Core-core repulsion = 18925.357566 eV Total energy + Delta-G solvation = -3175.163647 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.13489 -38.88402 -37.20886 -36.72248 -34.88188 -33.07704 -30.65079 -29.89955 -28.34586 -27.21394 -26.08036 -24.01814 -23.25750 -23.16998 -22.00181 -19.73714 -19.06905 -17.75094 -17.64439 -17.37576 -16.92921 -16.58494 -16.31242 -15.97663 -15.54417 -15.16235 -14.91773 -14.61613 -14.35782 -14.03058 -13.69220 -13.37760 -13.21596 -13.03838 -12.96429 -12.83519 -12.76078 -12.56933 -12.40768 -12.22907 -11.97956 -11.89702 -11.82048 -11.47224 -11.35805 -11.21844 -11.01978 -10.93240 -10.42126 -10.31906 -9.35531 -8.37679 -6.45643 1.32696 1.35969 1.46698 2.28973 2.61643 2.94896 3.07710 3.11250 3.22053 3.59940 3.85727 3.95877 4.11579 4.16377 4.21894 4.27840 4.29830 4.39338 4.48383 4.49026 4.55280 4.59352 4.70204 4.75267 4.78432 4.83811 4.85161 4.89658 4.92664 4.97744 5.01604 5.07941 5.09093 5.22718 5.31343 5.36325 5.43144 5.51939 5.92887 6.14510 6.27974 6.41079 6.58203 6.74304 7.18810 8.79585 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.026877 B = 0.003966 C = 0.003713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.525086 B = 7058.916238 C = 7540.208203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.398 6.398 3 C 0.140 3.860 4 C -0.134 4.134 5 C 0.063 3.937 6 H 0.040 0.960 7 C -0.131 4.131 8 N -0.683 5.683 9 C 0.073 3.927 10 C 0.051 3.949 11 O -0.407 6.407 12 C 0.183 3.817 13 C -0.545 4.545 14 H 0.028 0.972 15 C 0.013 3.987 16 N -0.942 5.942 17 Si 0.956 3.044 18 H -0.260 1.260 19 H -0.272 1.272 20 H -0.246 1.246 21 C -0.184 4.184 22 C -0.158 4.158 23 C -0.172 4.172 24 H 0.029 0.971 25 H 0.080 0.920 26 H 0.062 0.938 27 H 0.095 0.905 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.343 0.657 34 H 0.023 0.977 35 H 0.107 0.893 36 H 0.057 0.943 37 H 0.053 0.947 38 H 0.012 0.988 39 H 0.009 0.991 40 H 0.273 0.727 41 H 0.108 0.892 42 H 0.105 0.895 43 H 0.111 0.889 44 H 0.103 0.897 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.488 21.162 13.305 25.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.317 6.317 3 C 0.101 3.899 4 C -0.191 4.191 5 C -0.047 4.047 6 H 0.058 0.942 7 C -0.189 4.189 8 N -0.316 5.316 9 C -0.057 4.057 10 C -0.026 4.026 11 O -0.327 6.327 12 C 0.107 3.893 13 C -0.583 4.583 14 H 0.046 0.954 15 C -0.185 4.185 16 N -0.582 5.582 17 Si 0.778 3.222 18 H -0.184 1.184 19 H -0.197 1.197 20 H -0.169 1.169 21 C -0.203 4.203 22 C -0.195 4.195 23 C -0.209 4.209 24 H 0.048 0.952 25 H 0.099 0.901 26 H 0.080 0.920 27 H 0.113 0.887 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.162 0.838 34 H 0.041 0.959 35 H 0.125 0.875 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.029 0.971 39 H 0.027 0.973 40 H 0.082 0.918 41 H 0.126 0.874 42 H 0.123 0.877 43 H 0.129 0.871 44 H 0.121 0.879 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.003 21.207 13.241 25.021 hybrid contribution -0.953 -0.928 -0.671 1.490 sum 0.050 20.279 12.570 23.859 Atomic orbital electron populations 1.22722 0.81006 1.02857 0.99962 1.88005 1.20324 1.28648 1.94736 1.21227 0.94518 0.81981 0.92161 1.21845 0.92036 1.03232 1.01942 1.22101 0.97377 0.95931 0.89280 0.94233 1.21782 1.01685 0.93348 1.02039 1.60658 1.51952 1.14457 1.04497 1.21982 0.93758 0.99913 0.89999 1.22696 1.00445 0.81492 0.97942 1.87830 1.86176 1.16966 1.41707 1.20270 0.93639 0.89401 0.85995 1.21156 1.43924 0.90637 1.02564 0.95355 1.25844 0.95131 0.94273 1.03222 1.70031 1.49089 1.01164 1.37881 0.85595 0.79570 0.79467 0.77612 1.18445 1.19738 1.16903 1.22680 1.00820 1.04992 0.91841 1.23193 0.97517 0.96944 1.01807 1.22895 1.04077 0.97862 0.96089 0.95212 0.90127 0.91950 0.88663 0.92340 0.93093 0.90704 0.91676 0.92575 0.83817 0.95875 0.87543 0.92444 0.92847 0.97080 0.97337 0.91792 0.87412 0.87674 0.87109 0.87900 0.89758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 10.23 113.37 1.16 1.95 16 2 O -0.40 -11.92 9.45 -148.98 -1.41 -13.32 16 3 C 0.14 3.27 0.37 -10.79 0.00 3.26 16 4 C -0.13 -3.08 6.95 71.99 0.50 -2.58 16 5 C 0.06 1.47 1.55 44.91 0.07 1.54 16 6 H 0.04 0.95 6.26 -2.39 -0.01 0.93 16 7 C -0.13 -2.34 8.83 71.98 0.64 -1.71 16 8 N -0.68 -20.27 5.58 -491.57 -2.74 -23.01 16 9 C 0.07 2.09 5.90 86.30 0.51 2.60 16 10 C 0.05 1.78 6.28 71.98 0.45 2.23 16 11 O -0.41 -19.39 9.84 -148.98 -1.47 -20.85 16 12 C 0.18 9.42 4.76 71.24 0.34 9.76 16 13 C -0.55 -34.04 9.99 25.60 0.26 -33.78 16 14 H 0.03 1.99 8.06 -2.91 -0.02 1.97 16 15 C 0.01 0.80 5.47 84.66 0.46 1.26 16 16 N -0.94 -60.34 13.96 21.45 0.30 -60.04 16 17 Si 0.96 44.18 27.47 68.60 1.88 46.06 16 18 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 19 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 20 H -0.25 -10.45 6.54 99.48 0.65 -9.79 16 21 C -0.18 -3.25 2.70 -10.79 -0.03 -3.28 16 22 C -0.16 -2.15 9.54 30.59 0.29 -1.86 16 23 C -0.17 -2.86 9.81 30.59 0.30 -2.56 16 24 H 0.03 0.80 6.68 -2.39 -0.02 0.79 16 25 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 26 H 0.06 1.29 6.87 -2.39 -0.02 1.27 16 27 H 0.09 1.74 5.23 -2.38 -0.01 1.73 16 28 H 0.06 1.30 7.05 -2.39 -0.02 1.29 16 29 H 0.05 1.45 7.42 -2.39 -0.02 1.43 16 30 H 0.07 1.07 7.15 -2.39 -0.02 1.05 16 31 H 0.06 1.19 6.45 -2.39 -0.02 1.17 16 32 H 0.06 0.97 7.46 -2.39 -0.02 0.95 16 33 H 0.34 12.69 7.02 -89.69 -0.63 12.06 16 34 H 0.02 0.71 8.06 -2.39 -0.02 0.69 16 35 H 0.11 2.39 7.45 -2.39 -0.02 2.38 16 36 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 37 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.01 0.56 7.20 -2.39 -0.02 0.55 16 39 H 0.01 0.44 7.57 -2.39 -0.02 0.42 16 40 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 41 H 0.11 1.75 7.91 -2.39 -0.02 1.73 16 42 H 0.11 1.41 5.86 -2.39 -0.01 1.39 16 43 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.08 1.66 7.54 -2.39 -0.02 1.64 16 Total: -1.00 -71.10 345.67 1.79 -69.32 By element: Atomic # 1 Polarization: 24.72 SS G_CDS: 0.28 Total: 25.00 kcal Atomic # 6 Polarization: -28.10 SS G_CDS: 4.94 Total: -23.16 kcal Atomic # 7 Polarization: -80.60 SS G_CDS: -2.44 Total: -83.05 kcal Atomic # 8 Polarization: -31.30 SS G_CDS: -2.87 Total: -34.18 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.88 Total: 46.06 kcal Total: -71.10 1.79 -69.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411965790.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.168 kcal (2) G-P(sol) polarization free energy of solvation -71.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds