Wall clock time and date at job start Mon Mar 30 2020 05:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42903 * 109.46829 * 2 1 4 4 C 1.42898 * 114.00028 * 179.97438 * 3 2 1 5 5 H 1.08993 * 109.52095 * 29.88024 * 4 3 2 6 6 C 1.53111 * 109.57750 * 269.71834 * 4 3 2 7 7 C 1.53044 * 109.28005 * 182.40713 * 6 4 3 8 8 N 1.46850 * 109.52113 * 59.18012 * 7 6 4 9 9 C 1.46890 * 111.00118 * 174.16255 * 8 7 6 10 10 C 1.53006 * 109.47301 * 195.89277 * 9 8 7 11 11 O 1.42894 * 109.47207 * 64.17302 * 10 9 8 12 12 C 1.42901 * 114.00215 * 180.02562 * 11 10 9 13 13 C 1.50696 * 109.47236 * 179.97438 * 12 11 10 14 14 H 1.08003 * 120.00018 * 0.02562 * 13 12 11 15 15 C 1.37882 * 120.00138 * 180.02562 * 13 12 11 16 16 N 1.31506 * 119.99530 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 119.99982 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47311 * 60.00129 * 17 15 13 19 19 H 1.48502 * 109.47145 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47285 * 299.99677 * 17 15 13 21 21 C 1.46847 * 111.19807 * 298.26144 * 8 7 6 22 22 C 1.53040 * 109.52689 * 61.74088 * 21 8 7 23 23 H 1.08999 * 109.53445 * 60.78177 * 22 21 8 24 24 C 1.52994 * 109.50407 * 180.88127 * 22 21 8 25 25 H 1.09004 * 109.46786 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47513 * 299.99705 * 1 2 3 27 27 H 1.08997 * 109.47164 * 60.00103 * 1 2 3 28 28 H 1.08993 * 109.47139 * 240.00386 * 2 1 3 29 29 H 1.08997 * 109.47164 * 119.99897 * 2 1 3 30 30 H 1.09004 * 109.50659 * 302.34756 * 6 4 3 31 31 H 1.09000 * 109.50504 * 62.47244 * 6 4 3 32 32 H 1.08991 * 109.46258 * 179.19392 * 7 6 4 33 33 H 1.08996 * 109.46074 * 299.16916 * 7 6 4 34 34 H 1.09006 * 109.47326 * 315.88949 * 9 8 7 35 35 H 1.09002 * 109.47499 * 75.89303 * 9 8 7 36 36 H 1.09003 * 109.47186 * 184.17374 * 10 9 8 37 37 H 1.08998 * 109.46843 * 304.17319 * 10 9 8 38 38 H 1.08998 * 109.47170 * 299.99969 * 12 11 10 39 39 H 1.08997 * 109.46815 * 59.99710 * 12 11 10 40 40 H 0.97005 * 119.99847 * 179.97438 * 16 15 13 41 41 H 1.09007 * 109.46128 * 301.72476 * 21 8 7 42 42 H 1.09002 * 109.46141 * 181.75972 * 21 8 7 43 43 H 1.08997 * 109.47044 * 179.80408 * 24 22 21 44 44 H 1.08997 * 109.47288 * 299.80353 * 24 22 21 45 45 H 1.09003 * 109.47134 * 59.80369 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.8645 0.6010 -0.5109 6 6 3.9411 1.5081 1.4434 7 6 5.4607 1.6893 1.4362 8 7 5.8032 2.9336 0.7354 9 6 7.2426 3.2112 0.8286 10 6 7.5061 4.6703 0.4507 11 8 6.8760 5.5301 1.4023 12 6 7.0613 6.9225 1.1397 13 6 6.3581 7.7314 2.1990 14 1 5.8235 7.2321 2.9937 15 6 6.3971 9.1089 2.1539 16 7 7.0484 9.7168 1.1866 17 14 5.5260 10.1115 3.4674 18 1 6.0920 9.7801 4.7997 19 1 5.7184 11.5585 3.1944 20 1 4.0756 9.7931 3.4526 21 6 5.3648 2.8919 -0.6655 22 6 3.8424 2.7465 -0.7210 23 1 3.3764 3.6026 -0.2330 24 6 3.3884 2.6811 -2.1806 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.4773 2.3447 1.9659 31 1 3.6882 0.5766 1.9499 32 1 5.8255 1.7381 2.4621 33 1 5.9247 0.8455 0.9256 34 1 7.5816 3.0334 1.8492 35 1 7.7840 2.5558 0.1464 36 1 8.5801 4.8566 0.4479 37 1 7.1005 4.8675 -0.5416 38 1 8.1259 7.1559 1.1509 39 1 6.6462 7.1661 0.1618 40 1 7.0756 10.6859 1.1546 41 1 5.8293 2.0424 -1.1662 42 1 5.6601 3.8142 -1.1660 43 1 2.3044 2.5741 -2.2194 44 1 3.6816 3.5969 -2.6937 45 1 3.8557 1.8257 -2.6685 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451543972.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:59 Heat of formation + Delta-G solvation = -106.202402 kcal Electronic energy + Delta-G solvation = -21691.658343 eV Core-core repulsion = 18515.726425 eV Total energy + Delta-G solvation = -3175.931918 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.70209 -37.63457 -36.29497 -33.82029 -32.63104 -31.97601 -30.92640 -28.52475 -26.74185 -26.39614 -23.92233 -22.87857 -22.22892 -21.78696 -20.85553 -19.77555 -17.04668 -16.32182 -15.97714 -15.80107 -15.55851 -15.02907 -14.78469 -14.24588 -14.12376 -14.06775 -13.59966 -13.48602 -12.94871 -12.70079 -12.54141 -12.36916 -12.08891 -12.02259 -11.90052 -11.63622 -11.43571 -11.17172 -11.01593 -10.85123 -10.76830 -10.75598 -10.51948 -10.43943 -10.21528 -9.91539 -9.44831 -9.01588 -8.71301 -8.07983 -8.01275 -6.03290 -4.03917 3.38113 3.40018 3.44717 3.54294 3.99313 4.42082 4.66187 4.73967 4.85168 4.92741 4.95977 5.08425 5.14680 5.16624 5.23253 5.32043 5.33175 5.46192 5.46987 5.54273 5.58949 5.67071 5.69219 5.73610 5.78240 5.85683 5.90349 5.97367 6.04054 6.08634 6.18165 6.24391 6.27010 6.35070 6.43449 7.18482 7.20310 7.29691 7.31250 7.52444 7.88604 8.25495 8.71131 9.10895 9.60648 11.08445 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.019483 B = 0.003853 C = 0.003559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.816731 B = 7264.928129 C = 7865.424381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.378 6.378 4 C 0.098 3.902 5 H 0.052 0.948 6 C -0.138 4.138 7 C 0.062 3.938 8 N -0.524 5.524 9 C 0.062 3.938 10 C 0.068 3.932 11 O -0.379 6.379 12 C 0.195 3.805 13 C -0.510 4.510 14 H 0.066 0.934 15 C 0.055 3.945 16 N -0.901 5.901 17 Si 0.907 3.093 18 H -0.275 1.275 19 H -0.287 1.287 20 H -0.274 1.274 21 C 0.064 3.936 22 C -0.086 4.086 23 H 0.092 0.908 24 C -0.142 4.142 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.044 0.956 29 H 0.045 0.955 30 H 0.084 0.916 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.025 0.975 34 H 0.080 0.920 35 H 0.038 0.962 36 H 0.038 0.962 37 H 0.035 0.965 38 H 0.001 0.999 39 H 0.002 0.998 40 H 0.263 0.737 41 H 0.027 0.973 42 H 0.084 0.916 43 H 0.062 0.938 44 H 0.058 0.942 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.631 -21.090 -5.156 22.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.297 6.297 4 C 0.040 3.960 5 H 0.070 0.930 6 C -0.176 4.176 7 C -0.066 4.066 8 N -0.248 5.248 9 C -0.066 4.066 10 C -0.010 4.010 11 O -0.298 6.298 12 C 0.120 3.880 13 C -0.548 4.548 14 H 0.084 0.916 15 C -0.146 4.146 16 N -0.541 5.541 17 Si 0.735 3.265 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.200 1.200 21 C -0.064 4.064 22 C -0.105 4.105 23 H 0.111 0.889 24 C -0.200 4.200 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.103 0.897 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.043 0.957 34 H 0.098 0.902 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.053 0.947 38 H 0.019 0.981 39 H 0.020 0.980 40 H 0.073 0.927 41 H 0.045 0.955 42 H 0.103 0.897 43 H 0.082 0.918 44 H 0.077 0.923 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.054 -20.429 -4.826 22.145 hybrid contribution 0.432 -0.169 -0.030 0.465 sum -6.622 -20.598 -4.856 22.174 Atomic orbital electron populations 1.21737 0.93926 1.01942 1.03217 1.22450 0.95469 0.84422 0.99624 1.87949 1.21080 1.25678 1.94994 1.22172 0.80700 0.97695 0.95383 0.92975 1.22084 0.95666 1.02607 0.97249 1.22010 0.95196 0.90057 0.99386 1.61753 1.16101 1.33602 1.13390 1.22127 0.87115 0.95614 1.01699 1.22232 0.95694 0.89951 0.93163 1.87945 1.74749 1.18288 1.48848 1.20155 0.95492 0.75813 0.96495 1.21035 1.32600 0.90494 1.10677 0.91583 1.24942 0.95743 0.97516 0.96367 1.69957 1.42438 1.09375 1.32310 0.86409 0.80121 0.78434 0.81586 1.20074 1.21253 1.19991 1.22155 0.94161 1.00958 0.89149 1.21231 0.95234 0.97932 0.96059 0.88924 1.21732 1.01742 1.01411 0.95118 0.91416 0.91775 0.91900 0.93809 0.93690 0.89701 0.91858 0.90305 0.95663 0.90154 0.94356 0.94410 0.94692 0.98108 0.97969 0.92725 0.95522 0.89734 0.91846 0.92296 0.93464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 10.28 37.16 0.38 -0.82 16 2 C 0.06 0.53 6.47 37.16 0.24 0.77 16 3 O -0.38 -4.69 9.43 -35.23 -0.33 -5.03 16 4 C 0.10 1.18 2.08 -26.61 -0.06 1.12 16 5 H 0.05 0.57 7.79 -51.93 -0.40 0.16 16 6 C -0.14 -1.69 5.72 -26.65 -0.15 -1.85 16 7 C 0.06 0.78 5.44 -3.83 -0.02 0.76 16 8 N -0.52 -8.10 4.55 -234.66 -1.07 -9.16 16 9 C 0.06 0.95 5.36 -3.83 -0.02 0.93 16 10 C 0.07 1.29 6.08 37.16 0.23 1.51 16 11 O -0.38 -9.45 10.26 -35.23 -0.36 -9.81 16 12 C 0.19 5.51 5.69 36.00 0.20 5.71 16 13 C -0.51 -15.46 9.43 -34.44 -0.32 -15.78 16 14 H 0.07 2.00 7.81 -52.48 -0.41 1.59 16 15 C 0.05 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.90 -27.56 13.29 55.43 0.74 -26.82 16 17 Si 0.91 22.41 29.54 -169.99 -5.02 17.39 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 20 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 21 C 0.06 0.88 4.59 -3.83 -0.02 0.86 16 22 C -0.09 -1.14 2.61 -90.54 -0.24 -1.37 16 23 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 24 C -0.14 -1.61 9.07 37.15 0.34 -1.28 16 25 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.04 0.37 8.09 -51.93 -0.42 -0.05 16 29 H 0.04 0.39 7.96 -51.93 -0.41 -0.03 16 30 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.06 0.66 7.96 -51.93 -0.41 0.25 16 32 H 0.08 0.99 7.96 -51.93 -0.41 0.58 16 33 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.08 1.22 7.87 -51.93 -0.41 0.81 16 35 H 0.04 0.49 8.06 -51.93 -0.42 0.07 16 36 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.04 0.65 6.51 -51.93 -0.34 0.31 16 38 H 0.00 0.03 8.14 -51.93 -0.42 -0.39 16 39 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 40 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 41 H 0.03 0.33 8.14 -51.92 -0.42 -0.10 16 42 H 0.08 1.27 6.42 -51.93 -0.33 0.93 16 43 H 0.06 0.72 7.76 -51.93 -0.40 0.32 16 44 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 356.88 15.07 5.38 5.38 Total: -1.00 -32.43 356.88 -8.79 -41.21 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -8.58 Total: -5.27 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: 0.47 Total: -7.89 kcal Atomic # 7 Polarization: -35.65 SS G_CDS: -0.33 Total: -35.98 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: -0.69 Total: -14.84 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.43 -8.79 -41.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451543972.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.990 kcal (2) G-P(sol) polarization free energy of solvation -32.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds