Wall clock time and date at job start Mon Mar 30 2020 05:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42903 * 109.46829 * 2 1 4 4 C 1.42898 * 114.00028 * 179.97438 * 3 2 1 5 5 H 1.08993 * 109.52095 * 29.88024 * 4 3 2 6 6 C 1.53111 * 109.57750 * 269.71834 * 4 3 2 7 7 C 1.53044 * 109.28005 * 182.40713 * 6 4 3 8 8 N 1.46850 * 109.52113 * 59.18012 * 7 6 4 9 9 C 1.46890 * 111.00118 * 174.16255 * 8 7 6 10 10 C 1.53006 * 109.47301 * 195.89277 * 9 8 7 11 11 O 1.42894 * 109.47207 * 64.17302 * 10 9 8 12 12 C 1.42901 * 114.00215 * 180.02562 * 11 10 9 13 13 C 1.50696 * 109.47236 * 179.97438 * 12 11 10 14 14 H 1.08003 * 120.00018 * 0.02562 * 13 12 11 15 15 C 1.37882 * 120.00138 * 180.02562 * 13 12 11 16 16 N 1.31506 * 119.99530 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 119.99982 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47311 * 60.00129 * 17 15 13 19 19 H 1.48502 * 109.47145 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47285 * 299.99677 * 17 15 13 21 21 C 1.46847 * 111.19807 * 298.26144 * 8 7 6 22 22 C 1.53040 * 109.52689 * 61.74088 * 21 8 7 23 23 H 1.08999 * 109.53445 * 60.78177 * 22 21 8 24 24 C 1.52994 * 109.50407 * 180.88127 * 22 21 8 25 25 H 1.09004 * 109.46786 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47513 * 299.99705 * 1 2 3 27 27 H 1.08997 * 109.47164 * 60.00103 * 1 2 3 28 28 H 1.08993 * 109.47139 * 240.00386 * 2 1 3 29 29 H 1.08997 * 109.47164 * 119.99897 * 2 1 3 30 30 H 1.09004 * 109.50659 * 302.34756 * 6 4 3 31 31 H 1.09000 * 109.50504 * 62.47244 * 6 4 3 32 32 H 1.08991 * 109.46258 * 179.19392 * 7 6 4 33 33 H 1.08996 * 109.46074 * 299.16916 * 7 6 4 34 34 H 1.09006 * 109.47326 * 315.88949 * 9 8 7 35 35 H 1.09002 * 109.47499 * 75.89303 * 9 8 7 36 36 H 1.09003 * 109.47186 * 184.17374 * 10 9 8 37 37 H 1.08998 * 109.46843 * 304.17319 * 10 9 8 38 38 H 1.08998 * 109.47170 * 299.99969 * 12 11 10 39 39 H 1.08997 * 109.46815 * 59.99710 * 12 11 10 40 40 H 0.97005 * 119.99847 * 179.97438 * 16 15 13 41 41 H 1.09007 * 109.46128 * 301.72476 * 21 8 7 42 42 H 1.09002 * 109.46141 * 181.75972 * 21 8 7 43 43 H 1.08997 * 109.47044 * 179.80408 * 24 22 21 44 44 H 1.08997 * 109.47288 * 299.80353 * 24 22 21 45 45 H 1.09003 * 109.47134 * 59.80369 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.8645 0.6010 -0.5109 6 6 3.9411 1.5081 1.4434 7 6 5.4607 1.6893 1.4362 8 7 5.8032 2.9336 0.7354 9 6 7.2426 3.2112 0.8286 10 6 7.5061 4.6703 0.4507 11 8 6.8760 5.5301 1.4023 12 6 7.0613 6.9225 1.1397 13 6 6.3581 7.7314 2.1990 14 1 5.8235 7.2321 2.9937 15 6 6.3971 9.1089 2.1539 16 7 7.0484 9.7168 1.1866 17 14 5.5260 10.1115 3.4674 18 1 6.0920 9.7801 4.7997 19 1 5.7184 11.5585 3.1944 20 1 4.0756 9.7931 3.4526 21 6 5.3648 2.8919 -0.6655 22 6 3.8424 2.7465 -0.7210 23 1 3.3764 3.6026 -0.2330 24 6 3.3884 2.6811 -2.1806 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.4773 2.3447 1.9659 31 1 3.6882 0.5766 1.9499 32 1 5.8255 1.7381 2.4621 33 1 5.9247 0.8455 0.9256 34 1 7.5816 3.0334 1.8492 35 1 7.7840 2.5558 0.1464 36 1 8.5801 4.8566 0.4479 37 1 7.1005 4.8675 -0.5416 38 1 8.1259 7.1559 1.1509 39 1 6.6462 7.1661 0.1618 40 1 7.0756 10.6859 1.1546 41 1 5.8293 2.0424 -1.1662 42 1 5.6601 3.8142 -1.1660 43 1 2.3044 2.5741 -2.2194 44 1 3.6816 3.5969 -2.6937 45 1 3.8557 1.8257 -2.6685 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451543972.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:59 Heat of formation + Delta-G solvation = -127.942657 kcal Electronic energy + Delta-G solvation = -21692.601071 eV Core-core repulsion = 18515.726425 eV Total energy + Delta-G solvation = -3176.874647 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.71952 -38.87867 -37.88820 -35.13772 -34.61786 -33.02102 -31.78474 -30.10480 -28.59540 -27.48181 -25.01735 -24.45329 -23.66111 -22.81540 -22.13355 -20.79327 -18.60659 -17.96132 -17.46895 -17.09084 -16.61722 -16.48179 -16.04830 -15.93617 -15.54188 -15.25595 -14.73006 -14.59166 -14.40960 -13.83069 -13.62275 -13.56340 -13.26921 -13.05129 -13.02161 -12.87947 -12.76381 -12.75139 -12.58073 -12.35840 -12.14435 -11.97219 -11.85747 -11.64787 -11.53274 -11.31831 -11.19710 -10.83771 -10.33019 -10.15367 -9.13160 -8.31083 -6.42952 1.39245 1.44609 1.52841 2.35703 2.71448 2.90151 3.02359 3.27226 3.69664 3.80133 3.97347 4.10571 4.19643 4.23452 4.27006 4.34060 4.37046 4.40888 4.46761 4.51572 4.53914 4.59315 4.68066 4.72614 4.81042 4.82098 4.88365 4.92603 4.96069 5.00690 5.06731 5.12860 5.20308 5.22159 5.28282 5.31364 5.39740 5.56243 5.98786 6.17088 6.24604 6.38257 6.58678 6.88389 7.29304 8.81207 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.019483 B = 0.003853 C = 0.003559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.816731 B = 7264.928129 C = 7865.424381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.049 3.951 3 O -0.401 6.401 4 C 0.104 3.896 5 H 0.075 0.925 6 C -0.135 4.135 7 C 0.064 3.936 8 N -0.558 5.558 9 C 0.072 3.928 10 C 0.057 3.943 11 O -0.395 6.395 12 C 0.211 3.789 13 C -0.547 4.547 14 H 0.059 0.941 15 C 0.006 3.994 16 N -0.931 5.931 17 Si 0.982 3.018 18 H -0.264 1.264 19 H -0.273 1.273 20 H -0.268 1.268 21 C 0.067 3.933 22 C -0.086 4.086 23 H 0.052 0.948 24 C -0.135 4.135 25 H 0.091 0.909 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.051 0.949 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.047 0.953 37 H 0.035 0.965 38 H -0.016 1.016 39 H -0.021 1.021 40 H 0.271 0.729 41 H 0.053 0.947 42 H 0.063 0.937 43 H 0.060 0.940 44 H 0.053 0.947 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.953 -22.868 -4.943 24.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.027 4.027 3 O -0.321 6.321 4 C 0.046 3.954 5 H 0.092 0.908 6 C -0.173 4.173 7 C -0.063 4.063 8 N -0.283 5.283 9 C -0.056 4.056 10 C -0.021 4.021 11 O -0.315 6.315 12 C 0.136 3.864 13 C -0.584 4.584 14 H 0.077 0.923 15 C -0.192 4.192 16 N -0.571 5.571 17 Si 0.805 3.195 18 H -0.189 1.189 19 H -0.198 1.198 20 H -0.193 1.193 21 C -0.060 4.060 22 C -0.105 4.105 23 H 0.070 0.930 24 C -0.193 4.193 25 H 0.109 0.891 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.104 0.896 32 H 0.095 0.905 33 H 0.070 0.930 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.065 0.935 37 H 0.053 0.947 38 H 0.002 0.998 39 H -0.003 1.003 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.082 0.918 43 H 0.079 0.921 44 H 0.072 0.928 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.372 -22.236 -4.623 23.878 hybrid contribution 0.538 0.324 -0.156 0.647 sum -6.835 -21.912 -4.779 23.445 Atomic orbital electron populations 1.21761 0.93239 1.03240 1.02453 1.22685 0.96123 0.83123 1.00731 1.87936 1.21191 1.27849 1.95096 1.22091 0.80901 0.97411 0.95005 0.90751 1.22052 0.95353 1.02336 0.97521 1.22026 0.95390 0.89634 0.99265 1.61663 1.16186 1.35861 1.14618 1.22034 0.87872 0.93107 1.02581 1.22617 0.95861 0.91370 0.92206 1.87899 1.75722 1.17028 1.50831 1.19753 0.93894 0.77842 0.94934 1.21358 1.33910 0.91739 1.11430 0.92308 1.25958 0.96046 0.98437 0.98787 1.70063 1.42988 1.10141 1.33884 0.85251 0.78869 0.76906 0.78484 1.18889 1.19775 1.19253 1.22098 0.94468 1.00931 0.88528 1.21186 0.94820 0.97398 0.97141 0.92966 1.21667 1.01654 1.02080 0.93888 0.89077 0.92778 0.92436 0.92378 0.92757 0.92944 0.89610 0.90493 0.93043 0.90086 0.90751 0.93452 0.94681 0.99824 1.00278 0.92055 0.92893 0.91829 0.92132 0.92819 0.91345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 10.28 71.98 0.74 -1.41 16 2 C 0.05 0.82 6.47 71.98 0.47 1.28 16 3 O -0.40 -9.59 9.43 -148.98 -1.41 -10.99 16 4 C 0.10 2.34 2.08 30.67 0.06 2.40 16 5 H 0.07 1.37 7.79 -2.39 -0.02 1.35 16 6 C -0.13 -3.16 5.72 30.65 0.18 -2.98 16 7 C 0.06 1.52 5.44 86.33 0.47 1.99 16 8 N -0.56 -16.85 4.55 -896.34 -4.08 -20.93 16 9 C 0.07 2.10 5.36 86.31 0.46 2.56 16 10 C 0.06 2.18 6.08 71.98 0.44 2.62 16 11 O -0.40 -20.37 10.26 -148.98 -1.53 -21.90 16 12 C 0.21 12.43 5.69 71.23 0.41 12.84 16 13 C -0.55 -34.07 9.43 25.60 0.24 -33.83 16 14 H 0.06 3.65 7.81 -2.91 -0.02 3.63 16 15 C 0.01 0.36 5.46 84.66 0.46 0.82 16 16 N -0.93 -57.64 13.29 21.45 0.28 -57.36 16 17 Si 0.98 45.97 29.54 68.60 2.03 48.00 16 18 H -0.26 -11.85 7.11 99.48 0.71 -11.15 16 19 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 20 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 21 C 0.07 1.81 4.59 86.33 0.40 2.21 16 22 C -0.09 -2.29 2.61 -10.74 -0.03 -2.32 16 23 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 24 C -0.14 -2.96 9.07 71.98 0.65 -2.31 16 25 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.06 0.80 8.09 -2.39 -0.02 0.78 16 29 H 0.05 0.79 7.96 -2.39 -0.02 0.77 16 30 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.09 1.60 7.96 -2.39 -0.02 1.58 16 32 H 0.08 1.82 7.96 -2.39 -0.02 1.80 16 33 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.08 2.36 7.87 -2.38 -0.02 2.34 16 35 H 0.07 1.67 8.06 -2.39 -0.02 1.65 16 36 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.04 1.34 6.51 -2.39 -0.02 1.33 16 38 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 39 H -0.02 -1.27 8.14 -2.39 -0.02 -1.29 16 40 H 0.27 15.50 8.31 -92.70 -0.77 14.73 16 41 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 42 H 0.06 1.94 6.42 -2.39 -0.02 1.92 16 43 H 0.06 1.35 7.76 -2.39 -0.02 1.33 16 44 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -71.53 356.88 1.16 -70.37 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: 0.91 Total: 8.94 kcal Atomic # 6 Polarization: -21.07 SS G_CDS: 4.95 Total: -16.13 kcal Atomic # 7 Polarization: -74.50 SS G_CDS: -3.79 Total: -78.29 kcal Atomic # 8 Polarization: -29.96 SS G_CDS: -2.93 Total: -32.89 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -71.53 1.16 -70.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451543972.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.572 kcal (2) G-P(sol) polarization free energy of solvation -71.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds