Wall clock time and date at job start Mon Mar 30 2020 05:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42905 * 109.47256 * 2 1 4 4 C 1.42902 * 113.99725 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.57671 * 30.16033 * 4 3 2 6 6 C 1.53123 * 109.52150 * 270.00049 * 4 3 2 7 7 C 1.53039 * 109.31189 * 297.77487 * 6 4 3 8 8 N 1.46856 * 109.51787 * 300.79882 * 7 6 4 9 9 C 1.46902 * 110.99619 * 185.84053 * 8 7 6 10 10 C 1.52998 * 109.47139 * 293.95452 * 9 8 7 11 11 O 1.42900 * 109.47358 * 65.00058 * 10 9 8 12 12 C 1.42895 * 114.00238 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.47207 * 180.02562 * 12 11 10 14 14 H 1.07998 * 119.99963 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00240 * 180.02562 * 13 12 11 16 16 N 1.31512 * 119.99857 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00169 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47617 * 89.99684 * 17 15 13 19 19 H 1.48502 * 109.47112 * 209.99799 * 17 15 13 20 20 H 1.48501 * 109.46841 * 329.99290 * 17 15 13 21 21 C 1.46846 * 111.19871 * 61.74404 * 8 7 6 22 22 C 1.53030 * 109.52435 * 298.25760 * 21 8 7 23 23 H 1.09005 * 109.50161 * 299.23539 * 22 21 8 24 24 C 1.52998 * 109.50468 * 179.16172 * 22 21 8 25 25 H 1.09005 * 109.46932 * 299.99732 * 1 2 3 26 26 H 1.09000 * 109.47080 * 59.99344 * 1 2 3 27 27 H 1.09003 * 109.47457 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46932 * 240.00268 * 2 1 3 29 29 H 1.08994 * 109.47708 * 120.00359 * 2 1 3 30 30 H 1.09002 * 109.50371 * 177.81036 * 6 4 3 31 31 H 1.09003 * 109.50070 * 57.73196 * 6 4 3 32 32 H 1.09000 * 109.46148 * 60.81334 * 7 6 4 33 33 H 1.09002 * 109.46208 * 180.79044 * 7 6 4 34 34 H 1.09000 * 109.47271 * 53.95314 * 9 8 7 35 35 H 1.09002 * 109.46988 * 173.95490 * 9 8 7 36 36 H 1.09004 * 109.47273 * 185.00322 * 10 9 8 37 37 H 1.09007 * 109.47478 * 305.00074 * 10 9 8 38 38 H 1.09006 * 109.47372 * 299.99980 * 12 11 10 39 39 H 1.09002 * 109.47410 * 59.99940 * 12 11 10 40 40 H 0.97002 * 120.00384 * 180.02562 * 16 15 13 41 41 H 1.09004 * 109.46012 * 58.27074 * 21 8 7 42 42 H 1.08997 * 109.46257 * 178.24394 * 21 8 7 43 43 H 1.08997 * 109.47793 * 59.99591 * 24 22 21 44 44 H 1.09004 * 109.47457 * 180.02562 * 24 22 21 45 45 H 1.08998 * 109.47160 * 299.99491 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4600 -0.0006 5 1 3.8648 0.6038 -0.5168 6 6 3.9416 1.5002 1.4424 7 6 3.3773 2.7373 2.1448 8 7 3.7989 3.9456 1.4244 9 6 3.3921 5.1581 2.1470 10 6 1.8653 5.2560 2.1599 11 8 1.3245 4.1682 2.9123 12 6 -0.1026 4.1654 2.9864 13 6 -0.5611 2.9820 3.7991 14 1 0.1647 2.3000 4.2168 15 6 -1.9072 2.7694 4.0085 16 7 -2.7910 3.5995 3.4995 17 14 -2.4754 1.3029 5.0165 18 1 -2.5677 1.6911 6.4468 19 1 -3.8091 0.8595 4.5369 20 1 -1.5012 0.1921 4.8669 21 6 3.2804 3.9528 0.0505 22 6 3.8416 2.7520 -0.7143 23 1 4.9291 2.8185 -0.7488 24 6 3.2847 2.7483 -2.1393 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 5.0306 1.5470 1.4419 31 1 3.6162 0.6028 1.9687 32 1 2.2887 2.6830 2.1571 33 1 3.7506 2.7758 3.1681 34 1 3.7618 5.1119 3.1714 35 1 3.8082 6.0343 1.6497 36 1 1.5655 6.1989 2.6175 37 1 1.4897 5.2128 1.1375 38 1 -0.4436 5.0856 3.4610 39 1 -0.5186 4.0993 1.9811 40 1 -3.7380 3.4502 3.6471 41 1 2.1922 3.8928 0.0728 42 1 3.5832 4.8740 -0.4471 43 1 3.5751 3.6689 -2.6454 44 1 3.6844 1.8925 -2.6834 45 1 2.1974 2.6803 -2.1042 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451543974.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:07 Heat of formation + Delta-G solvation = -103.437439 kcal Electronic energy + Delta-G solvation = -23090.071191 eV Core-core repulsion = 19914.259170 eV Total energy + Delta-G solvation = -3175.812021 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.62430 -37.45380 -35.92020 -33.63788 -32.58778 -31.67068 -30.36494 -28.38492 -26.73451 -26.17810 -23.81080 -22.72097 -22.31420 -21.52788 -20.82505 -19.15956 -16.43800 -16.18639 -15.68096 -15.54288 -15.40160 -15.28975 -14.74100 -14.16241 -13.93965 -13.62336 -13.39821 -13.28206 -12.75460 -12.34380 -12.22948 -12.02987 -11.92509 -11.69867 -11.49952 -11.28497 -11.20538 -11.07099 -10.87872 -10.82211 -10.69733 -10.54918 -10.47100 -10.28126 -10.07899 -9.88964 -9.10124 -9.07367 -8.77089 -8.15293 -7.61768 -6.08635 -4.09620 3.29533 3.34863 3.39515 3.95184 4.32342 4.41176 4.85905 4.93342 5.06170 5.15313 5.27910 5.33900 5.34941 5.51579 5.62280 5.65428 5.68774 5.70464 5.75659 5.79303 5.79987 5.97016 5.98562 6.05442 6.09960 6.10646 6.18558 6.25377 6.27183 6.32305 6.45259 6.52171 6.58851 6.61560 7.06320 7.17931 7.46990 7.53265 7.58844 7.60782 7.80961 8.18393 8.60027 9.03124 9.54602 11.03007 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.016453 B = 0.006726 C = 0.005494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.452326 B = 4162.119307 C = 5095.052117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.063 3.937 3 O -0.366 6.366 4 C 0.094 3.906 5 H 0.052 0.948 6 C -0.138 4.138 7 C 0.049 3.951 8 N -0.536 5.536 9 C 0.060 3.940 10 C 0.024 3.976 11 O -0.385 6.385 12 C 0.195 3.805 13 C -0.507 4.507 14 H 0.064 0.936 15 C 0.057 3.943 16 N -0.899 5.899 17 Si 0.903 3.097 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.272 1.272 21 C 0.059 3.941 22 C -0.080 4.080 23 H 0.081 0.919 24 C -0.143 4.143 25 H 0.076 0.924 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.037 0.963 29 H 0.044 0.956 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.094 0.906 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.036 0.964 37 H 0.039 0.961 38 H 0.001 0.999 39 H 0.003 0.997 40 H 0.263 0.737 41 H 0.052 0.948 42 H 0.063 0.937 43 H 0.052 0.948 44 H 0.049 0.951 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.493 -3.230 -9.172 15.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.014 4.014 3 O -0.285 6.285 4 C 0.036 3.964 5 H 0.070 0.930 6 C -0.176 4.176 7 C -0.078 4.078 8 N -0.259 5.259 9 C -0.068 4.068 10 C -0.055 4.055 11 O -0.305 6.305 12 C 0.121 3.879 13 C -0.546 4.546 14 H 0.083 0.917 15 C -0.144 4.144 16 N -0.538 5.538 17 Si 0.730 3.270 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.196 1.196 21 C -0.069 4.069 22 C -0.099 4.099 23 H 0.100 0.900 24 C -0.201 4.201 25 H 0.095 0.905 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.112 0.888 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.054 0.946 37 H 0.057 0.943 38 H 0.019 0.981 39 H 0.021 0.979 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.082 0.918 43 H 0.071 0.929 44 H 0.068 0.932 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 12.797 -3.193 -9.114 16.032 hybrid contribution -1.366 -0.685 0.473 1.599 sum 11.432 -3.878 -8.641 14.845 Atomic orbital electron populations 1.21744 0.93621 1.01697 1.04049 1.22406 0.95821 0.84197 0.98929 1.88033 1.20025 1.25625 1.94823 1.22108 0.81986 0.96990 0.95365 0.93033 1.22097 1.00385 0.98966 0.96137 1.22276 1.02696 0.87230 0.95596 1.62224 1.58934 1.02648 1.02091 1.22217 0.92368 0.92825 0.99438 1.23023 0.95225 0.91568 0.95704 1.87910 1.24555 1.45288 1.72701 1.20158 0.74916 0.96923 0.95899 1.21004 0.91671 1.09788 1.32098 0.91740 1.24915 0.96292 0.97003 0.96168 1.69965 1.01587 1.37046 1.45195 0.86416 0.77957 0.82449 0.80159 1.20531 1.21117 1.19640 1.22042 0.98832 0.96905 0.89119 1.21240 1.00132 0.94072 0.94474 0.90048 1.21727 1.02263 1.00912 0.95206 0.90455 0.92297 0.91804 0.94456 0.93800 0.91472 0.91824 0.88810 0.91819 0.90384 0.90427 0.94574 0.94304 0.98138 0.97892 0.92760 0.93018 0.91841 0.92897 0.93166 0.91702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 10.28 37.16 0.38 -1.96 16 2 C 0.06 0.92 6.47 37.16 0.24 1.16 16 3 O -0.37 -6.11 8.09 -35.23 -0.29 -6.40 16 4 C 0.09 1.32 2.41 -26.56 -0.06 1.26 16 5 H 0.05 0.64 7.79 -51.93 -0.40 0.23 16 6 C -0.14 -2.04 5.78 -26.65 -0.15 -2.19 16 7 C 0.05 0.87 4.48 -3.83 -0.02 0.85 16 8 N -0.54 -8.58 4.86 -234.66 -1.14 -9.72 16 9 C 0.06 0.95 5.93 -3.82 -0.02 0.93 16 10 C 0.02 0.46 5.72 37.16 0.21 0.67 16 11 O -0.38 -9.17 7.00 -35.23 -0.25 -9.42 16 12 C 0.20 5.40 5.69 36.01 0.20 5.60 16 13 C -0.51 -14.85 9.43 -34.44 -0.32 -15.18 16 14 H 0.06 1.88 7.81 -52.49 -0.41 1.47 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.90 -27.03 13.29 55.43 0.74 -26.29 16 17 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 21 C 0.06 0.90 3.99 -3.84 -0.02 0.88 16 22 C -0.08 -1.06 2.72 -90.50 -0.25 -1.30 16 23 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 24 C -0.14 -1.68 9.04 37.16 0.34 -1.34 16 25 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 26 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.04 0.46 8.09 -51.93 -0.42 0.04 16 29 H 0.04 0.62 7.84 -51.93 -0.41 0.22 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.06 0.93 7.84 -51.93 -0.41 0.53 16 32 H 0.09 2.05 5.16 -51.93 -0.27 1.78 16 33 H 0.06 1.14 8.06 -51.93 -0.42 0.73 16 34 H 0.08 1.24 8.06 -51.93 -0.42 0.82 16 35 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.04 0.76 6.24 -51.92 -0.32 0.43 16 38 H 0.00 0.02 8.14 -51.93 -0.42 -0.40 16 39 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 40 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.05 0.95 6.11 -51.93 -0.32 0.63 16 42 H 0.06 0.86 8.12 -51.93 -0.42 0.44 16 43 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.06 0.87 7.63 -51.93 -0.40 0.47 16 LS Contribution 348.12 15.07 5.25 5.25 Total: -1.00 -30.69 348.12 -8.67 -39.37 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -8.40 Total: -0.56 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: 0.43 Total: -9.07 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: -0.40 Total: -36.01 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: -0.53 Total: -15.82 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.69 -8.67 -39.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451543974.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.070 kcal (2) G-P(sol) polarization free energy of solvation -30.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds