Wall clock time and date at job start Mon Mar 30 2020 05:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42905 * 109.47256 * 2 1 4 4 C 1.42902 * 113.99725 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.57671 * 30.16033 * 4 3 2 6 6 C 1.53123 * 109.52150 * 270.00049 * 4 3 2 7 7 C 1.53039 * 109.31189 * 297.77487 * 6 4 3 8 8 N 1.46856 * 109.51787 * 300.79882 * 7 6 4 9 9 C 1.46902 * 110.99619 * 185.84053 * 8 7 6 10 10 C 1.52998 * 109.47139 * 293.95452 * 9 8 7 11 11 O 1.42900 * 109.47358 * 65.00058 * 10 9 8 12 12 C 1.42895 * 114.00238 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.47207 * 180.02562 * 12 11 10 14 14 H 1.07998 * 119.99963 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00240 * 180.02562 * 13 12 11 16 16 N 1.31512 * 119.99857 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00169 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47617 * 89.99684 * 17 15 13 19 19 H 1.48502 * 109.47112 * 209.99799 * 17 15 13 20 20 H 1.48501 * 109.46841 * 329.99290 * 17 15 13 21 21 C 1.46846 * 111.19871 * 61.74404 * 8 7 6 22 22 C 1.53030 * 109.52435 * 298.25760 * 21 8 7 23 23 H 1.09005 * 109.50161 * 299.23539 * 22 21 8 24 24 C 1.52998 * 109.50468 * 179.16172 * 22 21 8 25 25 H 1.09005 * 109.46932 * 299.99732 * 1 2 3 26 26 H 1.09000 * 109.47080 * 59.99344 * 1 2 3 27 27 H 1.09003 * 109.47457 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46932 * 240.00268 * 2 1 3 29 29 H 1.08994 * 109.47708 * 120.00359 * 2 1 3 30 30 H 1.09002 * 109.50371 * 177.81036 * 6 4 3 31 31 H 1.09003 * 109.50070 * 57.73196 * 6 4 3 32 32 H 1.09000 * 109.46148 * 60.81334 * 7 6 4 33 33 H 1.09002 * 109.46208 * 180.79044 * 7 6 4 34 34 H 1.09000 * 109.47271 * 53.95314 * 9 8 7 35 35 H 1.09002 * 109.46988 * 173.95490 * 9 8 7 36 36 H 1.09004 * 109.47273 * 185.00322 * 10 9 8 37 37 H 1.09007 * 109.47478 * 305.00074 * 10 9 8 38 38 H 1.09006 * 109.47372 * 299.99980 * 12 11 10 39 39 H 1.09002 * 109.47410 * 59.99940 * 12 11 10 40 40 H 0.97002 * 120.00384 * 180.02562 * 16 15 13 41 41 H 1.09004 * 109.46012 * 58.27074 * 21 8 7 42 42 H 1.08997 * 109.46257 * 178.24394 * 21 8 7 43 43 H 1.08997 * 109.47793 * 59.99591 * 24 22 21 44 44 H 1.09004 * 109.47457 * 180.02562 * 24 22 21 45 45 H 1.08998 * 109.47160 * 299.99491 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4600 -0.0006 5 1 3.8648 0.6038 -0.5168 6 6 3.9416 1.5002 1.4424 7 6 3.3773 2.7373 2.1448 8 7 3.7989 3.9456 1.4244 9 6 3.3921 5.1581 2.1470 10 6 1.8653 5.2560 2.1599 11 8 1.3245 4.1682 2.9123 12 6 -0.1026 4.1654 2.9864 13 6 -0.5611 2.9820 3.7991 14 1 0.1647 2.3000 4.2168 15 6 -1.9072 2.7694 4.0085 16 7 -2.7910 3.5995 3.4995 17 14 -2.4754 1.3029 5.0165 18 1 -2.5677 1.6911 6.4468 19 1 -3.8091 0.8595 4.5369 20 1 -1.5012 0.1921 4.8669 21 6 3.2804 3.9528 0.0505 22 6 3.8416 2.7520 -0.7143 23 1 4.9291 2.8185 -0.7488 24 6 3.2847 2.7483 -2.1393 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 5.0306 1.5470 1.4419 31 1 3.6162 0.6028 1.9687 32 1 2.2887 2.6830 2.1571 33 1 3.7506 2.7758 3.1681 34 1 3.7618 5.1119 3.1714 35 1 3.8082 6.0343 1.6497 36 1 1.5655 6.1989 2.6175 37 1 1.4897 5.2128 1.1375 38 1 -0.4436 5.0856 3.4610 39 1 -0.5186 4.0993 1.9811 40 1 -3.7380 3.4502 3.6471 41 1 2.1922 3.8928 0.0728 42 1 3.5832 4.8740 -0.4471 43 1 3.5751 3.6689 -2.6454 44 1 3.6844 1.8925 -2.6834 45 1 2.1974 2.6803 -2.1042 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451543974.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:06 Heat of formation + Delta-G solvation = -123.721135 kcal Electronic energy + Delta-G solvation = -23090.950758 eV Core-core repulsion = 19914.259170 eV Total energy + Delta-G solvation = -3176.691588 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.87110 -38.97672 -37.49199 -35.14212 -34.53794 -32.88842 -31.63887 -30.08157 -28.64670 -27.32101 -25.22173 -24.51766 -23.85851 -22.81707 -22.09694 -20.40385 -18.63850 -17.54140 -17.44220 -16.95784 -16.74196 -16.57454 -16.39534 -15.83622 -15.34289 -15.23112 -14.72873 -14.54549 -14.25571 -13.82706 -13.69191 -13.28679 -13.19127 -13.10327 -12.96087 -12.84901 -12.70551 -12.63296 -12.58509 -12.38428 -12.13762 -12.01455 -11.89461 -11.66487 -11.48336 -11.29661 -11.02557 -10.84889 -10.28230 -10.18342 -9.07121 -8.33464 -6.45184 1.35223 1.38230 1.49995 2.31370 2.83349 3.00294 3.01719 3.31330 3.77170 3.91383 4.04292 4.15462 4.19773 4.21842 4.31021 4.36131 4.47028 4.49788 4.55342 4.56973 4.65510 4.66930 4.76972 4.81840 4.88542 4.90031 4.94295 4.97737 5.02746 5.09167 5.13851 5.15332 5.22761 5.29236 5.30106 5.49019 5.52339 5.61824 5.94783 6.18639 6.23976 6.49647 6.51512 6.79037 7.25997 8.79208 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.016453 B = 0.006726 C = 0.005494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.452326 B = 4162.119307 C = 5095.052117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.060 3.940 3 O -0.397 6.397 4 C 0.088 3.912 5 H 0.079 0.921 6 C -0.133 4.133 7 C 0.053 3.947 8 N -0.524 5.524 9 C 0.066 3.934 10 C 0.017 3.983 11 O -0.389 6.389 12 C 0.214 3.786 13 C -0.536 4.536 14 H 0.059 0.941 15 C 0.008 3.992 16 N -0.932 5.932 17 Si 0.977 3.023 18 H -0.267 1.267 19 H -0.274 1.274 20 H -0.264 1.264 21 C 0.060 3.940 22 C -0.077 4.077 23 H 0.104 0.896 24 C -0.137 4.137 25 H 0.030 0.970 26 H 0.056 0.944 27 H 0.091 0.909 28 H 0.069 0.931 29 H 0.044 0.956 30 H 0.090 0.910 31 H 0.059 0.941 32 H 0.046 0.954 33 H 0.053 0.947 34 H 0.079 0.921 35 H 0.114 0.886 36 H 0.041 0.959 37 H 0.032 0.968 38 H -0.022 1.022 39 H -0.027 1.027 40 H 0.270 0.730 41 H 0.011 0.989 42 H 0.083 0.917 43 H 0.067 0.933 44 H 0.069 0.931 45 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.365 -4.489 -9.859 17.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.016 4.016 3 O -0.317 6.317 4 C 0.031 3.969 5 H 0.097 0.903 6 C -0.171 4.171 7 C -0.075 4.075 8 N -0.247 5.247 9 C -0.063 4.063 10 C -0.062 4.062 11 O -0.309 6.309 12 C 0.139 3.861 13 C -0.573 4.573 14 H 0.077 0.923 15 C -0.190 4.190 16 N -0.571 5.571 17 Si 0.800 3.200 18 H -0.192 1.192 19 H -0.199 1.199 20 H -0.188 1.188 21 C -0.068 4.068 22 C -0.096 4.096 23 H 0.122 0.878 24 C -0.195 4.195 25 H 0.049 0.951 26 H 0.075 0.925 27 H 0.109 0.891 28 H 0.087 0.913 29 H 0.062 0.938 30 H 0.108 0.892 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.132 0.868 36 H 0.059 0.941 37 H 0.050 0.950 38 H -0.004 1.004 39 H -0.009 1.009 40 H 0.078 0.922 41 H 0.030 0.970 42 H 0.102 0.898 43 H 0.086 0.914 44 H 0.088 0.912 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 14.691 -4.440 -9.810 18.214 hybrid contribution -1.926 -0.211 0.640 2.041 sum 12.764 -4.651 -9.169 16.390 Atomic orbital electron populations 1.21732 0.94779 1.02713 1.01587 1.22505 0.94955 0.83763 1.00355 1.88030 1.21817 1.26917 1.94978 1.22310 0.80873 0.98615 0.95130 0.90312 1.22074 1.01533 0.97067 0.96427 1.22105 0.99769 0.89578 0.96022 1.62314 1.58015 1.01990 1.02389 1.22337 0.89340 0.94345 1.00264 1.23349 0.97718 0.90375 0.94745 1.87935 1.22055 1.47344 1.73530 1.19701 0.77091 0.95597 0.93668 1.21257 0.92415 1.10486 1.33161 0.92312 1.25913 0.96005 1.00129 0.96961 1.70080 1.02186 1.38871 1.45994 0.85276 0.77789 0.78380 0.78593 1.19212 1.19856 1.18783 1.22093 0.96508 0.99186 0.88978 1.21293 1.01204 0.92385 0.94704 0.87825 1.21670 1.00596 1.02590 0.94615 0.95054 0.92468 0.89057 0.91298 0.93801 0.89161 0.92206 0.93557 0.92797 0.90262 0.86766 0.94062 0.94952 1.00387 1.00918 0.92158 0.97046 0.89822 0.91433 0.91236 0.94202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.70 10.28 71.98 0.74 -3.96 16 2 C 0.06 1.72 6.47 71.98 0.47 2.19 16 3 O -0.40 -13.40 8.09 -148.98 -1.21 -14.61 16 4 C 0.09 2.34 2.41 30.70 0.07 2.42 16 5 H 0.08 1.68 7.79 -2.39 -0.02 1.66 16 6 C -0.13 -3.77 5.78 30.65 0.18 -3.59 16 7 C 0.05 1.89 4.48 86.32 0.39 2.28 16 8 N -0.52 -16.30 4.86 -896.34 -4.35 -20.65 16 9 C 0.07 2.02 5.93 86.30 0.51 2.53 16 10 C 0.02 0.66 5.72 71.98 0.41 1.07 16 11 O -0.39 -19.61 7.00 -148.98 -1.04 -20.65 16 12 C 0.21 12.63 5.69 71.24 0.41 13.03 16 13 C -0.54 -32.76 9.43 25.60 0.24 -32.52 16 14 H 0.06 3.57 7.81 -2.91 -0.02 3.55 16 15 C 0.01 0.48 5.46 84.66 0.46 0.95 16 16 N -0.93 -57.60 13.29 21.45 0.28 -57.31 16 17 Si 0.98 45.34 29.54 68.60 2.03 47.37 16 18 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 19 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 20 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 21 C 0.06 1.77 3.99 86.32 0.34 2.12 16 22 C -0.08 -1.86 2.72 -10.72 -0.03 -1.88 16 23 H 0.10 2.09 8.14 -2.38 -0.02 2.07 16 24 C -0.14 -2.90 9.04 71.98 0.65 -2.25 16 25 H 0.03 1.23 8.14 -2.38 -0.02 1.21 16 26 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 28 H 0.07 1.52 8.09 -2.38 -0.02 1.50 16 29 H 0.04 1.23 7.84 -2.39 -0.02 1.21 16 30 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.06 1.72 7.84 -2.39 -0.02 1.70 16 32 H 0.05 2.14 5.16 -2.39 -0.01 2.13 16 33 H 0.05 1.97 8.06 -2.39 -0.02 1.95 16 34 H 0.08 2.45 8.06 -2.39 -0.02 2.43 16 35 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16 36 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.03 1.33 6.24 -2.38 -0.01 1.31 16 38 H -0.02 -1.33 8.14 -2.38 -0.02 -1.35 16 39 H -0.03 -1.71 8.14 -2.39 -0.02 -1.72 16 40 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 41 H 0.01 0.43 6.11 -2.38 -0.01 0.42 16 42 H 0.08 2.10 8.12 -2.39 -0.02 2.08 16 43 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.04 1.04 7.63 -2.39 -0.02 1.02 16 Total: -1.00 -70.02 348.12 1.47 -68.55 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: 0.92 Total: 14.91 kcal Atomic # 6 Polarization: -22.46 SS G_CDS: 4.84 Total: -17.61 kcal Atomic # 7 Polarization: -73.90 SS G_CDS: -4.07 Total: -77.97 kcal Atomic # 8 Polarization: -33.01 SS G_CDS: -2.25 Total: -35.25 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -70.02 1.47 -68.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451543974.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.171 kcal (2) G-P(sol) polarization free energy of solvation -70.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds