Wall clock time and date at job start Mon Mar 30 2020 06:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 113.99856 * 2 1 4 4 C 1.52989 * 109.47136 * 180.02562 * 3 2 1 5 5 H 1.08992 * 108.74686 * 56.54775 * 4 3 2 6 6 C 1.54270 * 108.99023 * 298.11210 * 4 3 2 7 7 C 1.53817 * 112.02790 * 197.74222 * 6 4 3 8 8 C 1.50816 * 111.61785 * 318.99988 * 7 6 4 9 9 N 1.47634 * 108.03613 * 95.07030 * 8 7 6 10 10 C 1.46898 * 110.99920 * 150.30477 * 9 8 7 11 11 C 1.52997 * 109.46859 * 204.74219 * 10 9 8 12 12 O 1.42908 * 109.47076 * 63.79415 * 11 10 9 13 13 C 1.42900 * 113.99640 * 180.02562 * 12 11 10 14 14 C 1.50702 * 109.46428 * 180.02562 * 13 12 11 15 15 H 1.07996 * 120.00288 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99804 * 180.02562 * 14 13 12 17 17 N 1.31523 * 119.99995 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00099 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47110 * 90.00091 * 18 16 14 20 20 H 1.48507 * 109.47214 * 209.99857 * 18 16 14 21 21 H 1.48498 * 109.47356 * 329.99589 * 18 16 14 22 22 C 1.39780 * 114.76787 * 277.16962 * 9 8 7 23 23 C 1.50754 * 108.85633 * 175.00174 * 4 3 2 24 24 H 1.08994 * 109.47854 * 59.99667 * 1 2 3 25 25 H 1.09006 * 109.47245 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47130 * 299.99155 * 1 2 3 27 27 H 1.09006 * 109.46874 * 60.00016 * 3 2 1 28 28 H 1.09003 * 109.47260 * 300.00971 * 3 2 1 29 29 H 1.09006 * 108.98555 * 77.06453 * 6 4 3 30 30 H 1.08995 * 108.84662 * 318.33664 * 6 4 3 31 31 H 1.09003 * 109.05165 * 198.45025 * 7 6 4 32 32 H 1.09003 * 109.04977 * 79.55205 * 7 6 4 33 33 H 1.08991 * 109.75319 * 335.43125 * 8 7 6 34 34 H 1.09005 * 109.74764 * 214.69985 * 8 7 6 35 35 H 1.09003 * 109.47442 * 324.74306 * 10 9 8 36 36 H 1.09003 * 109.46956 * 84.74735 * 10 9 8 37 37 H 1.09000 * 109.47418 * 183.79177 * 11 10 9 38 38 H 1.09002 * 109.47552 * 303.79595 * 11 10 9 39 39 H 1.09000 * 109.47237 * 299.99689 * 13 12 11 40 40 H 1.08999 * 109.47417 * 60.00147 * 13 12 11 41 41 H 0.97004 * 119.99839 * 180.02562 * 17 16 14 42 42 H 1.08997 * 109.02022 * 301.68822 * 22 9 8 43 43 H 1.08998 * 108.96023 * 182.81869 * 22 9 8 44 44 H 1.09005 * 109.54402 * 93.93961 * 23 4 3 45 45 H 1.09003 * 109.54405 * 333.77207 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5353 1.1847 -0.0006 5 1 3.8393 0.5900 -0.8620 6 6 3.9821 0.4596 1.2857 7 6 5.4759 0.6768 1.5812 8 6 6.3071 0.6039 0.3249 9 7 6.4987 1.9790 -0.1769 10 6 7.7733 2.1041 -0.8963 11 6 8.2378 3.5615 -0.8612 12 8 8.4992 3.9457 0.4902 13 6 8.9409 5.2970 0.6351 14 6 9.1858 5.5917 2.0925 15 1 9.0203 4.8241 2.8340 16 6 9.6202 6.8417 2.4796 17 7 9.8213 7.7767 1.5767 18 14 9.9231 7.2074 4.2862 19 1 11.3321 6.8852 4.6270 20 1 9.6665 8.6461 4.5499 21 1 9.0114 6.3815 5.1180 22 6 5.4402 2.4756 -0.9430 23 6 4.1332 2.5630 -0.1249 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8901 27 1 1.6885 1.8464 0.8900 28 1 1.6885 1.8465 -0.8899 29 1 3.7943 -0.6083 1.1742 30 1 3.3963 0.8367 2.1239 31 1 5.8158 -0.0896 2.2778 32 1 5.6090 1.6567 2.0396 33 1 5.7891 0.0068 -0.4254 34 1 7.2751 0.1556 0.5493 35 1 8.5230 1.4723 -0.4199 36 1 7.6385 1.7906 -1.9315 37 1 9.1480 3.6671 -1.4515 38 1 7.4590 4.2012 -1.2766 39 1 9.8656 5.4390 0.0757 40 1 8.1764 5.9723 0.2509 41 1 10.1272 8.6561 1.8490 42 1 5.2811 1.8180 -1.7975 43 1 5.7006 3.4705 -1.3041 44 1 4.3501 2.9573 0.8679 45 1 3.4286 3.2217 -0.6328 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452074853.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:07 Heat of formation + Delta-G solvation = -98.711437 kcal Electronic energy + Delta-G solvation = -21642.601631 eV Core-core repulsion = 18466.994545 eV Total energy + Delta-G solvation = -3175.607086 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.68955 -37.99622 -36.51460 -34.67464 -32.62810 -32.29630 -29.77681 -27.93774 -26.77160 -26.05552 -25.18669 -23.25696 -22.24130 -21.69187 -20.37691 -19.17368 -16.58101 -16.38305 -16.26268 -16.13835 -15.56537 -15.31319 -14.93166 -14.63427 -14.43997 -14.14383 -13.95479 -13.19340 -13.10111 -12.74902 -12.72309 -12.22516 -11.98851 -11.91523 -11.63669 -11.46930 -11.18683 -11.07223 -10.83501 -10.76151 -10.64203 -10.47978 -10.32093 -10.23557 -10.15283 -9.89454 -9.83170 -9.00817 -8.71750 -8.05392 -7.83435 -6.04437 -4.04992 3.34406 3.39122 3.45211 3.57467 4.11824 4.41098 4.63742 4.74368 4.91504 4.95335 5.06123 5.07451 5.17139 5.27048 5.30175 5.32027 5.32924 5.38447 5.41619 5.57517 5.61085 5.68809 5.74024 5.82075 5.86456 5.93875 6.02092 6.13271 6.14832 6.23262 6.26158 6.29174 6.37634 6.46779 6.64689 6.96154 7.19545 7.42350 7.52520 7.73470 7.87866 8.25021 8.71508 9.10550 9.59681 11.07314 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.022762 B = 0.003582 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.828076 B = 7814.733166 C = 8270.092163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.391 6.391 3 C 0.064 3.936 4 C -0.084 4.084 5 H 0.070 0.930 6 C -0.103 4.103 7 C -0.121 4.121 8 C 0.070 3.930 9 N -0.542 5.542 10 C 0.066 3.934 11 C 0.067 3.933 12 O -0.379 6.379 13 C 0.195 3.805 14 C -0.508 4.508 15 H 0.066 0.934 16 C 0.054 3.946 17 N -0.901 5.901 18 Si 0.906 3.094 19 H -0.279 1.279 20 H -0.286 1.286 21 H -0.271 1.271 22 C 0.080 3.920 23 C -0.114 4.114 24 H 0.038 0.962 25 H 0.083 0.917 26 H 0.040 0.960 27 H 0.049 0.951 28 H 0.047 0.953 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.083 0.917 33 H 0.035 0.965 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.039 0.961 37 H 0.036 0.964 38 H 0.034 0.966 39 H 0.001 0.999 40 H 0.002 0.998 41 H 0.263 0.737 42 H 0.012 0.988 43 H 0.074 0.926 44 H 0.083 0.917 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.120 -14.829 -5.731 21.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C -0.013 4.013 4 C -0.102 4.102 5 H 0.089 0.911 6 C -0.141 4.141 7 C -0.159 4.159 8 C -0.057 4.057 9 N -0.266 5.266 10 C -0.061 4.061 11 C -0.011 4.011 12 O -0.298 6.298 13 C 0.120 3.880 14 C -0.547 4.547 15 H 0.084 0.916 16 C -0.146 4.146 17 N -0.541 5.541 18 Si 0.734 3.266 19 H -0.205 1.205 20 H -0.212 1.212 21 H -0.196 1.196 22 C -0.049 4.049 23 C -0.152 4.152 24 H 0.057 0.943 25 H 0.102 0.898 26 H 0.058 0.942 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.054 0.946 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.052 0.948 39 H 0.019 0.981 40 H 0.020 0.980 41 H 0.072 0.928 42 H 0.030 0.970 43 H 0.092 0.908 44 H 0.102 0.898 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.976 -14.656 -5.207 21.591 hybrid contribution -0.108 0.379 -0.122 0.413 sum -15.084 -14.276 -5.329 21.442 Atomic orbital electron populations 1.22715 0.81465 1.02510 0.99848 1.87888 1.19294 1.28405 1.95386 1.22834 0.94133 0.84288 0.99999 1.21074 0.92141 0.97431 0.99577 0.91119 1.21878 0.96027 0.99919 0.96267 1.21453 0.93633 1.03361 0.97488 1.21803 0.99589 0.87891 0.96375 1.58549 1.02262 1.22580 1.43176 1.22144 0.90950 0.97438 0.95554 1.22264 0.97471 0.94025 0.87348 1.87939 1.87348 1.32225 1.22291 1.20153 0.93016 0.77460 0.97372 1.21070 1.44178 0.97320 0.92082 0.91553 1.24951 0.95572 0.95786 0.98332 1.69974 1.46758 1.03999 1.33348 0.86359 0.78624 0.77311 0.84322 1.20549 1.21181 1.19608 1.20915 0.90915 0.99878 0.93230 1.21486 0.95904 0.95306 1.02462 0.94291 0.89846 0.94175 0.93228 0.93480 0.92201 0.92457 0.92171 0.89882 0.94647 0.91094 0.90342 0.94324 0.94569 0.94780 0.98149 0.98007 0.92791 0.97043 0.90797 0.89808 0.91586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.39 -4.29 10.37 -35.23 -0.37 -4.65 16 3 C 0.06 0.65 5.06 37.15 0.19 0.84 16 4 C -0.08 -0.93 1.93 -91.09 -0.18 -1.11 16 5 H 0.07 0.83 6.59 -51.93 -0.34 0.49 16 6 C -0.10 -1.18 4.98 -25.64 -0.13 -1.31 16 7 C -0.12 -1.54 5.41 -27.40 -0.15 -1.69 16 8 C 0.07 0.91 5.37 -4.52 -0.02 0.89 16 9 N -0.54 -8.21 3.81 -240.00 -0.91 -9.12 16 10 C 0.07 1.02 5.42 -3.83 -0.02 1.00 16 11 C 0.07 1.28 6.10 37.16 0.23 1.50 16 12 O -0.38 -9.36 10.26 -35.23 -0.36 -9.72 16 13 C 0.19 5.46 5.69 36.01 0.20 5.67 16 14 C -0.51 -15.28 9.43 -34.44 -0.32 -15.60 16 15 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 16 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 17 N -0.90 -27.43 13.29 55.43 0.74 -26.69 16 18 Si 0.91 22.22 29.54 -169.99 -5.02 17.20 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 22 C 0.08 1.09 4.76 -6.74 -0.03 1.06 16 23 C -0.11 -1.38 5.15 -27.10 -0.14 -1.52 16 24 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 27 H 0.05 0.48 8.09 -51.93 -0.42 0.06 16 28 H 0.05 0.44 7.95 -51.93 -0.41 0.02 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.65 7.94 -51.93 -0.41 0.24 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.08 1.26 7.26 -51.93 -0.38 0.88 16 33 H 0.04 0.43 6.67 -51.93 -0.35 0.08 16 34 H 0.07 0.90 7.38 -51.93 -0.38 0.52 16 35 H 0.08 1.19 7.41 -51.93 -0.38 0.81 16 36 H 0.04 0.50 7.98 -51.93 -0.41 0.09 16 37 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.03 0.64 6.62 -51.93 -0.34 0.29 16 39 H 0.00 0.02 8.14 -51.93 -0.42 -0.40 16 40 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 41 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 42 H 0.01 0.15 7.55 -51.93 -0.39 -0.24 16 43 H 0.07 1.08 6.39 -51.93 -0.33 0.75 16 44 H 0.08 1.17 7.11 -51.93 -0.37 0.80 16 45 H 0.07 0.71 7.60 -51.93 -0.39 0.31 16 LS Contribution 348.16 15.07 5.25 5.25 Total: -1.00 -32.16 348.16 -8.29 -40.44 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: -8.25 Total: -5.28 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: 0.64 Total: -7.43 kcal Atomic # 7 Polarization: -35.64 SS G_CDS: -0.18 Total: -35.81 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: -0.73 Total: -14.37 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.16 -8.29 -40.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452074853.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.267 kcal (2) G-P(sol) polarization free energy of solvation -32.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds