Wall clock time and date at job start Mon Mar 30 2020 06:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 113.99856 * 2 1 4 4 C 1.52989 * 109.47136 * 180.02562 * 3 2 1 5 5 H 1.08992 * 108.74686 * 56.54775 * 4 3 2 6 6 C 1.54270 * 108.99023 * 298.11210 * 4 3 2 7 7 C 1.53817 * 112.02790 * 197.74222 * 6 4 3 8 8 C 1.50816 * 111.61785 * 318.99988 * 7 6 4 9 9 N 1.47634 * 108.03613 * 95.07030 * 8 7 6 10 10 C 1.46898 * 110.99920 * 150.30477 * 9 8 7 11 11 C 1.52997 * 109.46859 * 204.74219 * 10 9 8 12 12 O 1.42908 * 109.47076 * 63.79415 * 11 10 9 13 13 C 1.42900 * 113.99640 * 180.02562 * 12 11 10 14 14 C 1.50702 * 109.46428 * 180.02562 * 13 12 11 15 15 H 1.07996 * 120.00288 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99804 * 180.02562 * 14 13 12 17 17 N 1.31523 * 119.99995 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00099 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47110 * 90.00091 * 18 16 14 20 20 H 1.48507 * 109.47214 * 209.99857 * 18 16 14 21 21 H 1.48498 * 109.47356 * 329.99589 * 18 16 14 22 22 C 1.39780 * 114.76787 * 277.16962 * 9 8 7 23 23 C 1.50754 * 108.85633 * 175.00174 * 4 3 2 24 24 H 1.08994 * 109.47854 * 59.99667 * 1 2 3 25 25 H 1.09006 * 109.47245 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47130 * 299.99155 * 1 2 3 27 27 H 1.09006 * 109.46874 * 60.00016 * 3 2 1 28 28 H 1.09003 * 109.47260 * 300.00971 * 3 2 1 29 29 H 1.09006 * 108.98555 * 77.06453 * 6 4 3 30 30 H 1.08995 * 108.84662 * 318.33664 * 6 4 3 31 31 H 1.09003 * 109.05165 * 198.45025 * 7 6 4 32 32 H 1.09003 * 109.04977 * 79.55205 * 7 6 4 33 33 H 1.08991 * 109.75319 * 335.43125 * 8 7 6 34 34 H 1.09005 * 109.74764 * 214.69985 * 8 7 6 35 35 H 1.09003 * 109.47442 * 324.74306 * 10 9 8 36 36 H 1.09003 * 109.46956 * 84.74735 * 10 9 8 37 37 H 1.09000 * 109.47418 * 183.79177 * 11 10 9 38 38 H 1.09002 * 109.47552 * 303.79595 * 11 10 9 39 39 H 1.09000 * 109.47237 * 299.99689 * 13 12 11 40 40 H 1.08999 * 109.47417 * 60.00147 * 13 12 11 41 41 H 0.97004 * 119.99839 * 180.02562 * 17 16 14 42 42 H 1.08997 * 109.02022 * 301.68822 * 22 9 8 43 43 H 1.08998 * 108.96023 * 182.81869 * 22 9 8 44 44 H 1.09005 * 109.54402 * 93.93961 * 23 4 3 45 45 H 1.09003 * 109.54405 * 333.77207 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5353 1.1847 -0.0006 5 1 3.8393 0.5900 -0.8620 6 6 3.9821 0.4596 1.2857 7 6 5.4759 0.6768 1.5812 8 6 6.3071 0.6039 0.3249 9 7 6.4987 1.9790 -0.1769 10 6 7.7733 2.1041 -0.8963 11 6 8.2378 3.5615 -0.8612 12 8 8.4992 3.9457 0.4902 13 6 8.9409 5.2970 0.6351 14 6 9.1858 5.5917 2.0925 15 1 9.0203 4.8241 2.8340 16 6 9.6202 6.8417 2.4796 17 7 9.8213 7.7767 1.5767 18 14 9.9231 7.2074 4.2862 19 1 11.3321 6.8852 4.6270 20 1 9.6665 8.6461 4.5499 21 1 9.0114 6.3815 5.1180 22 6 5.4402 2.4756 -0.9430 23 6 4.1332 2.5630 -0.1249 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8901 27 1 1.6885 1.8464 0.8900 28 1 1.6885 1.8465 -0.8899 29 1 3.7943 -0.6083 1.1742 30 1 3.3963 0.8367 2.1239 31 1 5.8158 -0.0896 2.2778 32 1 5.6090 1.6567 2.0396 33 1 5.7891 0.0068 -0.4254 34 1 7.2751 0.1556 0.5493 35 1 8.5230 1.4723 -0.4199 36 1 7.6385 1.7906 -1.9315 37 1 9.1480 3.6671 -1.4515 38 1 7.4590 4.2012 -1.2766 39 1 9.8656 5.4390 0.0757 40 1 8.1764 5.9723 0.2509 41 1 10.1272 8.6561 1.8490 42 1 5.2811 1.8180 -1.7975 43 1 5.7006 3.4705 -1.3041 44 1 4.3501 2.9573 0.8679 45 1 3.4286 3.2217 -0.6328 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452074853.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:06 Heat of formation + Delta-G solvation = -119.908430 kcal Electronic energy + Delta-G solvation = -21643.520802 eV Core-core repulsion = 18466.994545 eV Total energy + Delta-G solvation = -3176.526256 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.73318 -38.94689 -38.18817 -35.84352 -34.81135 -33.31845 -31.15906 -29.29096 -28.40963 -26.85794 -26.31224 -24.45613 -24.20885 -22.94592 -21.53555 -20.12832 -18.60273 -17.54937 -17.44249 -17.17877 -16.92424 -16.59681 -16.24037 -15.98150 -15.69470 -15.53879 -15.22364 -14.82553 -14.31201 -13.86030 -13.76050 -13.52442 -13.38408 -13.00165 -12.93738 -12.83475 -12.71510 -12.53435 -12.40869 -12.16316 -12.07053 -11.78902 -11.51530 -11.42530 -11.25667 -11.19573 -11.14248 -10.82585 -10.57082 -10.13538 -8.95879 -8.30101 -6.41778 1.40220 1.43332 1.55577 2.36486 2.85265 2.99928 3.03414 3.29182 3.72864 3.83662 4.02544 4.10677 4.23857 4.27491 4.33132 4.41276 4.45855 4.47863 4.55159 4.56494 4.61557 4.62411 4.67259 4.77507 4.78926 4.84340 4.85676 4.89593 4.94619 5.02682 5.14774 5.19234 5.22049 5.23369 5.32908 5.48394 5.57789 5.60683 6.00274 6.24879 6.29549 6.57983 6.66220 6.90560 7.30616 8.82366 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.022762 B = 0.003582 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.828076 B = 7814.733166 C = 8270.092163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.412 6.412 3 C 0.066 3.934 4 C -0.078 4.078 5 H 0.069 0.931 6 C -0.097 4.097 7 C -0.118 4.118 8 C 0.073 3.927 9 N -0.566 5.566 10 C 0.074 3.926 11 C 0.058 3.942 12 O -0.393 6.393 13 C 0.210 3.790 14 C -0.543 4.543 15 H 0.060 0.940 16 C 0.005 3.995 17 N -0.932 5.932 18 Si 0.983 3.017 19 H -0.267 1.267 20 H -0.274 1.274 21 H -0.265 1.265 22 C 0.079 3.921 23 C -0.108 4.108 24 H 0.048 0.952 25 H 0.096 0.904 26 H 0.046 0.954 27 H 0.051 0.949 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.050 0.950 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.044 0.956 38 H 0.034 0.966 39 H -0.018 1.018 40 H -0.020 1.020 41 H 0.270 0.730 42 H 0.028 0.972 43 H 0.057 0.943 44 H 0.060 0.940 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.926 -15.803 -5.369 23.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.331 6.331 3 C -0.010 4.010 4 C -0.096 4.096 5 H 0.088 0.912 6 C -0.135 4.135 7 C -0.156 4.156 8 C -0.053 4.053 9 N -0.291 5.291 10 C -0.053 4.053 11 C -0.020 4.020 12 O -0.312 6.312 13 C 0.135 3.865 14 C -0.581 4.581 15 H 0.078 0.922 16 C -0.193 4.193 17 N -0.572 5.572 18 Si 0.805 3.195 19 H -0.192 1.192 20 H -0.199 1.199 21 H -0.189 1.189 22 C -0.050 4.050 23 C -0.146 4.146 24 H 0.067 0.933 25 H 0.114 0.886 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.088 0.912 37 H 0.062 0.938 38 H 0.052 0.948 39 H 0.000 1.000 40 H -0.002 1.002 41 H 0.079 0.921 42 H 0.046 0.954 43 H 0.076 0.924 44 H 0.079 0.921 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -15.795 -15.649 -4.865 22.760 hybrid contribution 0.105 0.659 -0.316 0.738 sum -15.690 -14.990 -5.181 22.310 Atomic orbital electron populations 1.22898 0.79891 1.03664 1.00634 1.87845 1.21076 1.28638 1.95548 1.22781 0.93255 0.84378 1.00622 1.20970 0.93045 0.96424 0.99197 0.91229 1.21815 0.94971 1.00209 0.96468 1.21404 0.94708 1.01931 0.97517 1.21816 0.99943 0.86904 0.96618 1.58505 1.02532 1.24136 1.43907 1.22065 0.91218 0.94472 0.97514 1.22623 0.98025 0.96618 0.84711 1.87897 1.87231 1.30098 1.26002 1.19758 0.91389 0.78897 0.96441 1.21377 1.45777 0.98064 0.92853 0.92208 1.25968 0.94460 0.95134 1.03777 1.70080 1.46645 1.04571 1.35901 0.85193 0.79026 0.77599 0.77649 1.19222 1.19898 1.18935 1.20927 0.91003 0.99235 0.93824 1.21419 0.95749 0.96335 1.01083 0.93334 0.88604 0.93546 0.93046 0.92428 0.91676 0.92633 0.91150 0.92868 0.93170 0.90860 0.90209 0.91165 0.93762 0.94753 1.00022 1.00233 0.92113 0.95402 0.92417 0.92133 0.90127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 113.37 1.25 1.59 16 2 O -0.41 -8.28 10.37 -148.98 -1.55 -9.82 16 3 C 0.07 1.23 5.06 71.98 0.36 1.60 16 4 C -0.08 -1.63 1.93 -11.10 -0.02 -1.65 16 5 H 0.07 1.50 6.59 -2.39 -0.02 1.48 16 6 C -0.10 -2.12 4.98 31.30 0.16 -1.96 16 7 C -0.12 -2.92 5.41 30.16 0.16 -2.76 16 8 C 0.07 1.82 5.37 85.45 0.46 2.28 16 9 N -0.57 -16.83 3.81 -913.23 -3.48 -20.30 16 10 C 0.07 2.21 5.42 86.30 0.47 2.68 16 11 C 0.06 2.21 6.10 71.98 0.44 2.65 16 12 O -0.39 -19.93 10.26 -148.98 -1.53 -21.46 16 13 C 0.21 12.26 5.69 71.24 0.41 12.66 16 14 C -0.54 -33.36 9.43 25.60 0.24 -33.11 16 15 H 0.06 3.66 7.81 -2.91 -0.02 3.63 16 16 C 0.00 0.28 5.46 84.65 0.46 0.74 16 17 N -0.93 -57.25 13.29 21.45 0.28 -56.97 16 18 Si 0.98 45.38 29.54 68.60 2.03 47.41 16 19 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 20 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 21 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 22 C 0.08 2.10 4.76 88.07 0.42 2.52 16 23 C -0.11 -2.57 5.15 30.35 0.16 -2.41 16 24 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 25 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16 26 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 27 H 0.05 0.93 8.09 -2.38 -0.02 0.91 16 28 H 0.06 0.95 7.95 -2.39 -0.02 0.93 16 29 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 30 H 0.05 1.22 7.94 -2.39 -0.02 1.21 16 31 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.05 1.65 7.26 -2.39 -0.02 1.63 16 33 H 0.05 1.10 6.67 -2.39 -0.02 1.09 16 34 H 0.07 1.77 7.38 -2.38 -0.02 1.75 16 35 H 0.08 2.34 7.41 -2.39 -0.02 2.32 16 36 H 0.07 1.66 7.98 -2.39 -0.02 1.65 16 37 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.03 1.31 6.62 -2.39 -0.02 1.29 16 39 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 40 H -0.02 -1.23 8.14 -2.39 -0.02 -1.25 16 41 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 42 H 0.03 0.65 7.55 -2.39 -0.02 0.63 16 43 H 0.06 1.69 6.39 -2.39 -0.02 1.67 16 44 H 0.06 1.73 7.11 -2.38 -0.02 1.71 16 45 H 0.08 1.65 7.60 -2.39 -0.02 1.63 16 Total: -1.00 -69.27 348.16 1.65 -67.62 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: 0.93 Total: 8.72 kcal Atomic # 6 Polarization: -20.15 SS G_CDS: 4.96 Total: -15.19 kcal Atomic # 7 Polarization: -74.08 SS G_CDS: -3.19 Total: -77.27 kcal Atomic # 8 Polarization: -28.21 SS G_CDS: -3.07 Total: -31.28 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -69.27 1.65 -67.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452074853.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.293 kcal (2) G-P(sol) polarization free energy of solvation -69.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds