Wall clock time and date at job start Mon Mar 30 2020 06:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 114.00130 * 2 1 4 4 C 1.53000 * 109.47683 * 180.02562 * 3 2 1 5 5 H 1.09001 * 108.73454 * 306.69464 * 4 3 2 6 6 C 1.50463 * 108.77099 * 64.99381 * 4 3 2 7 7 C 1.54501 * 108.84826 * 213.06974 * 6 4 3 8 8 C 1.45858 * 111.59807 * 282.81227 * 7 6 4 9 9 N 1.47800 * 112.92313 * 61.32838 * 8 7 6 10 10 C 1.46898 * 111.00572 * 153.87460 * 9 8 7 11 11 C 1.53007 * 109.46706 * 49.64694 * 10 9 8 12 12 O 1.42893 * 109.47335 * 65.83553 * 11 10 9 13 13 C 1.42898 * 114.00081 * 179.97438 * 12 11 10 14 14 C 1.50703 * 109.46926 * 180.02562 * 13 12 11 15 15 H 1.07995 * 120.00089 * 0.02562 * 14 13 12 16 16 C 1.37882 * 119.99416 * 180.02562 * 14 13 12 17 17 N 1.31510 * 120.00345 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99495 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47749 * 59.99623 * 18 16 14 20 20 H 1.48500 * 109.47002 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.46891 * 299.99392 * 18 16 14 22 22 C 1.44273 * 109.45725 * 276.74719 * 9 8 7 23 23 C 1.54064 * 111.91490 * 96.47393 * 22 9 8 24 24 H 1.08998 * 109.46974 * 300.00004 * 1 2 3 25 25 H 1.08996 * 109.47172 * 60.00532 * 1 2 3 26 26 H 1.09007 * 109.46930 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47414 * 59.99781 * 3 2 1 28 28 H 1.09006 * 109.46730 * 300.00457 * 3 2 1 29 29 H 1.09001 * 109.57085 * 93.25926 * 6 4 3 30 30 H 1.09002 * 109.68196 * 332.94719 * 6 4 3 31 31 H 1.09010 * 109.05417 * 162.26824 * 7 6 4 32 32 H 1.08998 * 109.00063 * 43.32503 * 7 6 4 33 33 H 1.08997 * 108.79634 * 300.44127 * 8 7 6 34 34 H 1.08999 * 108.70283 * 182.15314 * 8 7 6 35 35 H 1.08996 * 109.47537 * 169.64595 * 10 9 8 36 36 H 1.09004 * 109.47209 * 289.64947 * 10 9 8 37 37 H 1.08999 * 109.46725 * 185.84253 * 11 10 9 38 38 H 1.09004 * 109.46876 * 305.83579 * 11 10 9 39 39 H 1.09003 * 109.47058 * 300.00362 * 13 12 11 40 40 H 1.09000 * 109.47262 * 60.00168 * 13 12 11 41 41 H 0.97003 * 120.00172 * 180.02562 * 17 16 14 42 42 H 1.08994 * 108.98198 * 217.07800 * 22 9 8 43 43 H 1.09004 * 108.97690 * 335.87326 * 22 9 8 44 44 H 1.08997 * 108.91842 * 79.59984 * 23 22 9 45 45 H 1.09007 * 108.91617 * 198.14577 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 1 3.8361 0.5421 0.8268 6 6 3.9701 0.5464 -1.2920 7 6 5.2272 -0.3116 -1.0264 8 6 6.4237 0.5132 -0.9018 9 7 6.3507 1.4670 0.2249 10 6 7.6935 1.8140 0.7089 11 6 8.5753 2.2132 -0.4761 12 8 8.0769 3.4208 -1.0552 13 6 8.8335 3.8835 -2.1756 14 6 8.2223 5.1560 -2.7034 15 1 7.3443 5.5701 -2.2302 16 6 8.7843 5.7914 -3.7904 17 7 9.8538 5.2874 -4.3663 18 14 8.0272 7.3690 -4.4441 19 1 8.0396 8.4029 -3.3782 20 1 8.8126 7.8492 -5.6093 21 1 6.6270 7.1088 -4.8650 22 6 5.6298 2.6460 -0.1895 23 6 4.1450 2.5846 0.2169 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.6886 1.8464 0.8900 28 1 1.6885 1.8463 -0.8900 29 1 4.2044 1.3215 -2.0217 30 1 3.1702 -0.0867 -1.6760 31 1 5.3615 -1.0111 -1.8516 32 1 5.0847 -0.8736 -0.1034 33 1 6.5625 1.0726 -1.8269 34 1 7.2842 -0.1393 -0.7543 35 1 7.6239 2.6480 1.4072 36 1 8.1315 0.9529 1.2138 37 1 9.5975 2.3702 -0.1316 38 1 8.5615 1.4194 -1.2229 39 1 9.8609 4.0753 -1.8660 40 1 8.8255 3.1245 -2.9579 41 1 10.2493 5.7346 -5.1308 42 1 6.0875 3.5215 0.2711 43 1 5.6971 2.7400 -1.2734 44 1 4.0556 2.8502 1.2702 45 1 3.5859 3.3080 -0.3768 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452074858.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:10 Heat of formation + Delta-G solvation = -101.903101 kcal Electronic energy + Delta-G solvation = -22096.935161 eV Core-core repulsion = 18921.189674 eV Total energy + Delta-G solvation = -3175.745487 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.54316 -37.98456 -36.51675 -34.43932 -32.70199 -32.40410 -29.70265 -27.68577 -26.83302 -25.74413 -25.43708 -22.83704 -22.37127 -22.11189 -19.94905 -18.97833 -16.52516 -16.41789 -16.15415 -15.93812 -15.63680 -15.17121 -14.92770 -14.65846 -14.33820 -14.04839 -13.71324 -13.27584 -12.87590 -12.87078 -12.50470 -12.21976 -12.04510 -11.63447 -11.56378 -11.36237 -11.15045 -10.91802 -10.85154 -10.73418 -10.58471 -10.39853 -10.27457 -10.14182 -10.13009 -9.94284 -9.70957 -9.15043 -8.85749 -8.22060 -7.87935 -6.14011 -4.16224 3.29261 3.32354 3.35756 3.69221 4.23535 4.33051 4.85434 4.87696 5.00378 5.08408 5.15695 5.18319 5.22398 5.34536 5.41176 5.45916 5.48671 5.58004 5.59962 5.64963 5.68519 5.79815 5.90546 5.93620 6.05215 6.12027 6.14873 6.21254 6.29973 6.38570 6.45572 6.47220 6.54147 6.63058 6.71905 7.06642 7.10923 7.38675 7.45797 7.55282 7.75132 8.11527 8.53036 8.96434 9.48835 10.97423 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.019554 B = 0.004306 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.570572 B = 6501.570116 C = 7353.807941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.389 6.389 3 C 0.061 3.939 4 C -0.072 4.072 5 H 0.081 0.919 6 C -0.110 4.110 7 C -0.109 4.109 8 C 0.051 3.949 9 N -0.523 5.523 10 C 0.059 3.941 11 C 0.023 3.977 12 O -0.391 6.391 13 C 0.197 3.803 14 C -0.515 4.515 15 H 0.065 0.935 16 C 0.057 3.943 17 N -0.898 5.898 18 Si 0.907 3.093 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.275 1.275 22 C 0.063 3.937 23 C -0.103 4.103 24 H 0.038 0.962 25 H 0.038 0.962 26 H 0.082 0.918 27 H 0.045 0.955 28 H 0.046 0.954 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.045 0.955 34 H 0.060 0.940 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.037 0.963 38 H 0.039 0.961 39 H 0.003 0.997 40 H 0.002 0.998 41 H 0.265 0.735 42 H 0.074 0.926 43 H 0.054 0.946 44 H 0.057 0.943 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.195 -10.400 8.982 19.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.308 6.308 3 C -0.016 4.016 4 C -0.091 4.091 5 H 0.099 0.901 6 C -0.147 4.147 7 C -0.147 4.147 8 C -0.077 4.077 9 N -0.246 5.246 10 C -0.069 4.069 11 C -0.056 4.056 12 O -0.311 6.311 13 C 0.122 3.878 14 C -0.553 4.553 15 H 0.083 0.917 16 C -0.144 4.144 17 N -0.537 5.537 18 Si 0.734 3.266 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.200 1.200 22 C -0.066 4.066 23 C -0.142 4.142 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.101 0.899 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.055 0.945 38 H 0.058 0.942 39 H 0.021 0.979 40 H 0.020 0.980 41 H 0.074 0.926 42 H 0.093 0.907 43 H 0.073 0.927 44 H 0.076 0.924 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.373 -10.652 9.296 19.461 hybrid contribution 0.289 1.343 -1.272 1.873 sum -13.084 -9.308 8.023 17.951 Atomic orbital electron populations 1.22699 0.81659 1.02396 0.99749 1.87885 1.19087 1.28512 1.95333 1.22780 0.94999 0.84097 0.99700 1.20826 0.90938 0.97832 0.99459 0.90099 1.21361 0.97363 0.98989 0.97025 1.20540 0.94819 0.97862 1.01472 1.21023 0.97925 0.95542 0.93200 1.61824 1.15210 1.13469 1.34051 1.22386 0.88075 1.00437 0.95989 1.23070 0.97253 0.89414 0.95864 1.87873 1.55401 1.38761 1.49099 1.20157 0.90953 0.94239 0.82404 1.20994 1.13296 1.07466 1.13539 0.91669 1.24947 0.95007 0.98196 0.96289 1.69951 1.21070 1.40095 1.22628 0.86411 0.79157 0.82716 0.78293 1.19994 1.21140 1.20013 1.21836 0.92080 0.92254 1.00418 1.21968 0.96151 0.95078 1.00978 0.94366 0.94293 0.89923 0.93706 0.93565 0.92090 0.91600 0.92166 0.91662 0.93695 0.92176 0.90286 0.90247 0.94451 0.94248 0.97936 0.98041 0.92583 0.90735 0.92744 0.92372 0.92381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.39 -4.66 9.93 -35.23 -0.35 -5.01 16 3 C 0.06 0.69 5.08 37.16 0.19 0.88 16 4 C -0.07 -0.91 2.03 -91.25 -0.19 -1.09 16 5 H 0.08 1.10 7.38 -51.93 -0.38 0.72 16 6 C -0.11 -1.43 5.04 -27.21 -0.14 -1.57 16 7 C -0.11 -1.40 5.53 -29.32 -0.16 -1.57 16 8 C 0.05 0.74 3.55 -6.71 -0.02 0.71 16 9 N -0.52 -7.86 4.45 -239.56 -1.07 -8.93 16 10 C 0.06 0.89 5.73 -3.82 -0.02 0.87 16 11 C 0.02 0.42 5.65 37.16 0.21 0.63 16 12 O -0.39 -9.06 7.86 -35.23 -0.28 -9.33 16 13 C 0.20 5.34 5.69 36.01 0.20 5.55 16 14 C -0.51 -14.97 9.43 -34.44 -0.32 -15.29 16 15 H 0.07 1.87 7.81 -52.49 -0.41 1.46 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 17 N -0.90 -26.87 13.29 55.43 0.74 -26.14 16 18 Si 0.91 21.74 29.54 -169.99 -5.02 16.72 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 21 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 22 C 0.06 1.02 3.73 -4.67 -0.02 1.00 16 23 C -0.10 -1.38 5.49 -25.53 -0.14 -1.52 16 24 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.04 0.47 8.12 -51.93 -0.42 0.05 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.87 7.15 -51.93 -0.37 0.50 16 30 H 0.07 0.84 7.16 -51.93 -0.37 0.47 16 31 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 32 H 0.06 0.83 7.58 -51.93 -0.39 0.44 16 33 H 0.04 0.77 6.80 -51.93 -0.35 0.42 16 34 H 0.06 0.82 7.33 -51.93 -0.38 0.44 16 35 H 0.08 1.19 7.69 -51.93 -0.40 0.79 16 36 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.04 0.72 6.24 -51.93 -0.32 0.39 16 39 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 40 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 41 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 42 H 0.07 1.33 6.69 -51.93 -0.35 0.98 16 43 H 0.05 1.03 6.15 -51.93 -0.32 0.71 16 44 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.06 0.75 7.98 -51.92 -0.41 0.33 16 LS Contribution 343.63 15.07 5.18 5.18 Total: -1.00 -30.46 343.63 -8.45 -38.91 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -8.25 Total: -2.91 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: 0.61 Total: -8.48 kcal Atomic # 7 Polarization: -34.73 SS G_CDS: -0.33 Total: -35.06 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: -0.63 Total: -14.35 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.46 -8.45 -38.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452074858.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.997 kcal (2) G-P(sol) polarization free energy of solvation -30.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds