Wall clock time and date at job start Mon Mar 30 2020 06:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 114.00130 * 2 1 4 4 C 1.53000 * 109.47683 * 180.02562 * 3 2 1 5 5 H 1.09001 * 108.73454 * 306.69464 * 4 3 2 6 6 C 1.50463 * 108.77099 * 64.99381 * 4 3 2 7 7 C 1.54501 * 108.84826 * 213.06974 * 6 4 3 8 8 C 1.45858 * 111.59807 * 282.81227 * 7 6 4 9 9 N 1.47800 * 112.92313 * 61.32838 * 8 7 6 10 10 C 1.46898 * 111.00572 * 153.87460 * 9 8 7 11 11 C 1.53007 * 109.46706 * 49.64694 * 10 9 8 12 12 O 1.42893 * 109.47335 * 65.83553 * 11 10 9 13 13 C 1.42898 * 114.00081 * 179.97438 * 12 11 10 14 14 C 1.50703 * 109.46926 * 180.02562 * 13 12 11 15 15 H 1.07995 * 120.00089 * 0.02562 * 14 13 12 16 16 C 1.37882 * 119.99416 * 180.02562 * 14 13 12 17 17 N 1.31510 * 120.00345 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99495 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47749 * 59.99623 * 18 16 14 20 20 H 1.48500 * 109.47002 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.46891 * 299.99392 * 18 16 14 22 22 C 1.44273 * 109.45725 * 276.74719 * 9 8 7 23 23 C 1.54064 * 111.91490 * 96.47393 * 22 9 8 24 24 H 1.08998 * 109.46974 * 300.00004 * 1 2 3 25 25 H 1.08996 * 109.47172 * 60.00532 * 1 2 3 26 26 H 1.09007 * 109.46930 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47414 * 59.99781 * 3 2 1 28 28 H 1.09006 * 109.46730 * 300.00457 * 3 2 1 29 29 H 1.09001 * 109.57085 * 93.25926 * 6 4 3 30 30 H 1.09002 * 109.68196 * 332.94719 * 6 4 3 31 31 H 1.09010 * 109.05417 * 162.26824 * 7 6 4 32 32 H 1.08998 * 109.00063 * 43.32503 * 7 6 4 33 33 H 1.08997 * 108.79634 * 300.44127 * 8 7 6 34 34 H 1.08999 * 108.70283 * 182.15314 * 8 7 6 35 35 H 1.08996 * 109.47537 * 169.64595 * 10 9 8 36 36 H 1.09004 * 109.47209 * 289.64947 * 10 9 8 37 37 H 1.08999 * 109.46725 * 185.84253 * 11 10 9 38 38 H 1.09004 * 109.46876 * 305.83579 * 11 10 9 39 39 H 1.09003 * 109.47058 * 300.00362 * 13 12 11 40 40 H 1.09000 * 109.47262 * 60.00168 * 13 12 11 41 41 H 0.97003 * 120.00172 * 180.02562 * 17 16 14 42 42 H 1.08994 * 108.98198 * 217.07800 * 22 9 8 43 43 H 1.09004 * 108.97690 * 335.87326 * 22 9 8 44 44 H 1.08997 * 108.91842 * 79.59984 * 23 22 9 45 45 H 1.09007 * 108.91617 * 198.14577 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 1 3.8361 0.5421 0.8268 6 6 3.9701 0.5464 -1.2920 7 6 5.2272 -0.3116 -1.0264 8 6 6.4237 0.5132 -0.9018 9 7 6.3507 1.4670 0.2249 10 6 7.6935 1.8140 0.7089 11 6 8.5753 2.2132 -0.4761 12 8 8.0769 3.4208 -1.0552 13 6 8.8335 3.8835 -2.1756 14 6 8.2223 5.1560 -2.7034 15 1 7.3443 5.5701 -2.2302 16 6 8.7843 5.7914 -3.7904 17 7 9.8538 5.2874 -4.3663 18 14 8.0272 7.3690 -4.4441 19 1 8.0396 8.4029 -3.3782 20 1 8.8126 7.8492 -5.6093 21 1 6.6270 7.1088 -4.8650 22 6 5.6298 2.6460 -0.1895 23 6 4.1450 2.5846 0.2169 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.6886 1.8464 0.8900 28 1 1.6885 1.8463 -0.8900 29 1 4.2044 1.3215 -2.0217 30 1 3.1702 -0.0867 -1.6760 31 1 5.3615 -1.0111 -1.8516 32 1 5.0847 -0.8736 -0.1034 33 1 6.5625 1.0726 -1.8269 34 1 7.2842 -0.1393 -0.7543 35 1 7.6239 2.6480 1.4072 36 1 8.1315 0.9529 1.2138 37 1 9.5975 2.3702 -0.1316 38 1 8.5615 1.4194 -1.2229 39 1 9.8609 4.0753 -1.8660 40 1 8.8255 3.1245 -2.9579 41 1 10.2493 5.7346 -5.1308 42 1 6.0875 3.5215 0.2711 43 1 5.6971 2.7400 -1.2734 44 1 4.0556 2.8502 1.2702 45 1 3.5859 3.3080 -0.3768 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452074858.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:09 Heat of formation + Delta-G solvation = -121.870930 kcal Electronic energy + Delta-G solvation = -22097.801031 eV Core-core repulsion = 18921.189674 eV Total energy + Delta-G solvation = -3176.611357 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.75329 -39.05784 -38.07007 -35.73529 -34.80557 -33.56353 -31.09217 -29.34531 -28.17361 -26.72062 -26.64267 -24.62326 -23.74947 -23.51950 -21.13964 -20.16211 -18.62239 -17.61883 -17.41382 -17.20628 -16.82302 -16.62924 -16.21193 -16.06960 -15.84310 -15.38531 -15.02001 -14.77231 -14.16867 -14.07004 -13.82683 -13.65205 -13.25945 -13.08602 -12.93616 -12.80722 -12.66613 -12.52404 -12.28938 -12.11292 -12.07138 -11.81210 -11.62459 -11.35594 -11.30646 -11.24389 -11.07992 -10.87898 -10.53107 -10.26411 -9.21757 -8.35250 -6.48048 1.37128 1.41692 1.50133 2.31348 2.87778 2.96898 2.98630 3.24413 3.82080 3.96293 4.02404 4.13211 4.23111 4.27290 4.38070 4.42552 4.51314 4.52053 4.53862 4.58262 4.60154 4.66310 4.69798 4.80337 4.86151 4.88028 4.89635 4.95116 5.02692 5.12729 5.15255 5.16189 5.27494 5.38048 5.41505 5.47856 5.50925 5.59048 5.92181 6.17577 6.24781 6.31819 6.49560 6.77411 7.24038 8.76893 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.019554 B = 0.004306 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.570572 B = 6501.570116 C = 7353.807941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.410 6.410 3 C 0.064 3.936 4 C -0.066 4.066 5 H 0.076 0.924 6 C -0.107 4.107 7 C -0.106 4.106 8 C 0.055 3.945 9 N -0.514 5.514 10 C 0.065 3.935 11 C 0.015 3.985 12 O -0.397 6.397 13 C 0.213 3.787 14 C -0.546 4.546 15 H 0.062 0.938 16 C 0.006 3.994 17 N -0.932 5.932 18 Si 0.982 3.018 19 H -0.264 1.264 20 H -0.275 1.275 21 H -0.265 1.265 22 C 0.071 3.929 23 C -0.097 4.097 24 H 0.048 0.952 25 H 0.045 0.955 26 H 0.096 0.904 27 H 0.057 0.943 28 H 0.048 0.952 29 H 0.041 0.959 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.011 0.989 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.114 0.886 37 H 0.043 0.957 38 H 0.039 0.961 39 H -0.019 1.019 40 H -0.023 1.023 41 H 0.271 0.729 42 H 0.054 0.946 43 H 0.019 0.981 44 H 0.071 0.929 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.714 -10.497 9.836 20.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.330 6.330 3 C -0.012 4.012 4 C -0.085 4.085 5 H 0.095 0.905 6 C -0.144 4.144 7 C -0.143 4.143 8 C -0.072 4.072 9 N -0.237 5.237 10 C -0.063 4.063 11 C -0.063 4.063 12 O -0.317 6.317 13 C 0.138 3.862 14 C -0.583 4.583 15 H 0.081 0.919 16 C -0.192 4.192 17 N -0.571 5.571 18 Si 0.804 3.196 19 H -0.189 1.189 20 H -0.200 1.200 21 H -0.190 1.190 22 C -0.059 4.059 23 C -0.135 4.135 24 H 0.067 0.933 25 H 0.063 0.937 26 H 0.114 0.886 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.030 0.970 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.132 0.868 37 H 0.061 0.939 38 H 0.057 0.943 39 H -0.001 1.001 40 H -0.005 1.005 41 H 0.079 0.921 42 H 0.073 0.927 43 H 0.037 0.963 44 H 0.090 0.910 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.901 -10.769 10.169 21.010 hybrid contribution 0.788 1.285 -1.511 2.134 sum -14.113 -9.483 8.658 19.081 Atomic orbital electron populations 1.22893 0.79948 1.03634 1.00584 1.87841 1.20999 1.28624 1.95500 1.22689 0.93866 0.84285 1.00369 1.20722 0.92139 0.96853 0.98756 0.90549 1.21324 0.97616 0.98569 0.96923 1.20517 0.93785 0.97658 1.02384 1.21022 0.99480 0.95260 0.91450 1.61967 1.14995 1.12846 1.33856 1.22503 0.87469 1.01882 0.94424 1.23413 0.98500 0.87487 0.96930 1.87860 1.55115 1.40928 1.47801 1.19734 0.90117 0.93374 0.82953 1.21325 1.13771 1.08593 1.14632 0.91949 1.25966 0.95229 1.01921 0.96091 1.70066 1.22230 1.41754 1.23029 0.85258 0.78532 0.77861 0.77937 1.18863 1.20020 1.19018 1.21725 0.94175 0.92028 0.97926 1.21886 0.93967 0.95974 1.01710 0.93290 0.93675 0.88585 0.92517 0.93403 0.94051 0.91104 0.91046 0.90683 0.97039 0.90930 0.90067 0.86773 0.93891 0.94326 1.00099 1.00492 0.92050 0.92697 0.96298 0.91033 0.92119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 113.37 1.25 1.63 16 2 O -0.41 -9.05 9.93 -148.98 -1.48 -10.53 16 3 C 0.06 1.35 5.08 71.98 0.37 1.72 16 4 C -0.07 -1.59 2.03 -11.20 -0.02 -1.61 16 5 H 0.08 1.93 7.38 -2.39 -0.02 1.92 16 6 C -0.11 -2.74 5.04 30.28 0.15 -2.58 16 7 C -0.11 -2.62 5.53 28.92 0.16 -2.46 16 8 C 0.06 1.60 3.55 83.94 0.30 1.90 16 9 N -0.51 -15.17 4.45 -911.83 -4.06 -19.22 16 10 C 0.07 1.89 5.73 86.31 0.49 2.38 16 11 C 0.02 0.56 5.65 71.98 0.41 0.97 16 12 O -0.40 -19.08 7.86 -148.98 -1.17 -20.25 16 13 C 0.21 12.11 5.69 71.24 0.41 12.52 16 14 C -0.55 -32.60 9.43 25.60 0.24 -32.35 16 15 H 0.06 3.67 7.81 -2.91 -0.02 3.64 16 16 C 0.01 0.37 5.46 84.66 0.46 0.84 16 17 N -0.93 -56.58 13.29 21.45 0.28 -56.30 16 18 Si 0.98 44.51 29.54 68.60 2.03 46.53 16 19 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 20 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 21 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 22 C 0.07 2.32 3.73 87.15 0.33 2.65 16 23 C -0.10 -2.53 5.49 31.37 0.17 -2.35 16 24 H 0.05 0.62 8.14 -2.39 -0.02 0.61 16 25 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 27 H 0.06 1.06 8.12 -2.39 -0.02 1.04 16 28 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 29 H 0.04 1.21 7.15 -2.39 -0.02 1.20 16 30 H 0.07 1.74 7.16 -2.39 -0.02 1.73 16 31 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 32 H 0.07 1.75 7.58 -2.39 -0.02 1.73 16 33 H 0.01 0.41 6.80 -2.39 -0.02 0.39 16 34 H 0.07 1.91 7.33 -2.39 -0.02 1.89 16 35 H 0.08 2.35 7.69 -2.39 -0.02 2.33 16 36 H 0.11 2.58 8.14 -2.38 -0.02 2.56 16 37 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.04 1.44 6.24 -2.38 -0.01 1.42 16 39 H -0.02 -1.12 8.14 -2.39 -0.02 -1.14 16 40 H -0.02 -1.37 8.14 -2.39 -0.02 -1.38 16 41 H 0.27 15.27 8.31 -92.71 -0.77 14.49 16 42 H 0.05 2.00 6.69 -2.39 -0.02 1.98 16 43 H 0.02 0.75 6.15 -2.38 -0.01 0.73 16 44 H 0.07 1.68 8.14 -2.39 -0.02 1.67 16 45 H 0.06 1.54 7.98 -2.38 -0.02 1.52 16 Total: -1.00 -66.50 343.63 1.24 -65.26 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: 0.93 Total: 11.26 kcal Atomic # 6 Polarization: -21.46 SS G_CDS: 4.71 Total: -16.75 kcal Atomic # 7 Polarization: -71.75 SS G_CDS: -3.77 Total: -75.52 kcal Atomic # 8 Polarization: -28.12 SS G_CDS: -2.65 Total: -30.77 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Total: -66.50 1.24 -65.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452074858.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.614 kcal (2) G-P(sol) polarization free energy of solvation -66.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds