Wall clock time and date at job start Mon Mar 30 2020 06:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 S 1.76199 * 119.99836 * 180.27759 * 7 2 1 10 10 O 1.42091 * 103.00084 * 65.86804 * 9 7 2 11 11 C 1.81402 * 102.99699 * 179.72079 * 9 7 2 12 12 C 1.50699 * 109.46804 * 179.97438 * 11 9 7 13 13 O 1.21261 * 120.00172 * 0.02562 * 12 11 9 14 14 C 1.47093 * 120.00000 * 179.97438 * 12 11 9 15 15 C 1.39897 * 120.15421 * 359.72605 * 14 12 11 16 16 C 1.37816 * 119.83656 * 179.73866 * 15 14 12 17 17 C 1.38572 * 120.15914 * 0.53770 * 16 15 14 18 18 Cl 1.73596 * 119.83912 * 179.69323 * 17 16 15 19 19 C 1.38569 * 120.31556 * 359.71898 * 17 16 15 20 20 C 1.37806 * 120.16115 * 0.02562 * 19 17 16 21 21 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 22 22 H 1.08995 * 109.47263 * 299.99687 * 11 9 7 23 23 H 1.09002 * 109.47511 * 60.00068 * 11 9 7 24 24 H 1.08004 * 120.08477 * 359.97438 * 15 14 12 25 25 H 1.07998 * 119.92545 * 180.22919 * 16 15 14 26 26 H 1.07998 * 119.91373 * 180.02562 * 19 17 16 27 27 H 1.08002 * 120.08124 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 16 3.7665 -1.1941 0.0069 10 8 4.0809 -0.6317 1.2733 11 6 4.1745 -2.9616 0.0121 12 6 5.6719 -3.1314 0.0181 13 8 6.3927 -2.1563 0.0192 14 6 6.2591 -4.4801 0.0237 15 6 5.4306 -5.6073 0.0293 16 6 5.9878 -6.8678 0.0291 17 6 7.3651 -7.0202 0.0346 18 17 8.0580 -8.6118 0.0424 19 6 8.1918 -5.9081 0.0345 20 6 7.6487 -4.6416 0.0294 21 1 -0.4849 0.8400 0.0004 22 1 3.7519 -3.4294 0.9012 23 1 3.7593 -3.4331 -0.8787 24 1 4.3569 -5.4900 0.0299 25 1 5.3495 -7.7390 0.0296 26 1 9.2644 -6.0344 0.0384 27 1 8.2943 -3.7758 0.0298 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000526868407.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:05 Heat of formation + Delta-G solvation = -58.591559 kcal Electronic energy + Delta-G solvation = -15496.105419 eV Core-core repulsion = 12564.649057 eV Total energy + Delta-G solvation = -2931.456362 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 272.006 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.99486 -38.26691 -36.66715 -33.98191 -32.78163 -31.90961 -31.22944 -28.97780 -25.99208 -23.86205 -22.86208 -20.05185 -18.05648 -17.53921 -16.20849 -15.82013 -15.70060 -15.19482 -14.92333 -14.50314 -14.19598 -13.81954 -13.64086 -13.15197 -12.71425 -12.50695 -12.34303 -12.06896 -11.76380 -11.63487 -11.14984 -11.10203 -10.85525 -10.72073 -9.92691 -9.66425 -9.34768 -8.98424 -8.97050 -8.52277 -6.99656 -6.57906 -4.85687 0.39529 1.04402 1.78293 2.38239 2.93243 3.12882 3.32334 3.45740 3.53897 4.10458 4.18364 4.50094 4.59258 4.75823 4.80773 5.03972 5.05445 5.33339 5.43631 5.48429 5.68851 5.90614 5.93789 6.03371 6.13281 6.16155 6.45553 7.65409 7.67954 8.36173 8.94923 10.52085 Molecular weight = 272.01amu Principal moments of inertia in cm(-1) A = 0.052364 B = 0.003908 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.590780 B = 7162.963673 C = 7608.174107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.134 3.866 3 Si 0.807 3.193 4 H -0.254 1.254 5 H -0.263 1.263 6 H -0.211 1.211 7 C -0.826 4.826 8 H 0.095 0.905 9 S 1.311 4.689 10 O -0.903 6.903 11 C -0.516 4.516 12 C 0.424 3.576 13 O -0.445 6.445 14 C -0.153 4.153 15 C -0.057 4.057 16 C -0.125 4.125 17 C -0.013 4.013 18 Cl -0.070 7.070 19 C -0.125 4.125 20 C -0.053 4.053 21 H 0.275 0.725 22 H 0.110 0.890 23 H 0.136 0.864 24 H 0.146 0.854 25 H 0.139 0.861 26 H 0.138 0.862 27 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.420 -13.371 -5.054 19.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.081 4.081 3 Si 0.628 3.372 4 H -0.178 1.178 5 H -0.188 1.188 6 H -0.133 1.133 7 C -0.967 4.967 8 H 0.113 0.887 9 S 1.510 4.490 10 O -0.898 6.898 11 C -0.646 4.646 12 C 0.301 3.699 13 O -0.320 6.320 14 C -0.155 4.155 15 C -0.075 4.075 16 C -0.144 4.144 17 C -0.039 4.039 18 Cl -0.041 7.041 19 C -0.144 4.144 20 C -0.071 4.071 21 H 0.085 0.915 22 H 0.128 0.872 23 H 0.154 0.846 24 H 0.164 0.836 25 H 0.157 0.843 26 H 0.156 0.844 27 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 14.365 -12.183 -5.006 19.490 hybrid contribution -1.128 -0.752 1.814 2.264 sum 13.238 -12.935 -3.192 18.782 Atomic orbital electron populations 1.70013 1.06802 1.28501 1.42601 1.24590 0.94444 0.99237 0.89817 0.87720 0.84744 0.83952 0.80778 1.17834 1.18784 1.13250 1.27463 1.08831 0.99413 1.60969 0.88698 1.69634 0.89819 0.81166 1.08390 1.92914 1.84157 1.66176 1.46508 1.28437 0.97185 1.31021 1.07968 1.21838 0.90387 0.87084 0.70618 1.90533 1.64051 1.41496 1.35904 1.20851 0.94266 0.95816 1.04556 1.21575 1.00972 0.90678 0.94319 1.21063 0.92830 0.98471 1.01989 1.21251 0.93668 0.86263 1.02747 1.98379 1.84805 1.24206 1.96701 1.21025 1.00309 0.90843 1.02207 1.21456 0.94355 0.97267 0.94068 0.91518 0.87163 0.84629 0.83585 0.84314 0.84401 0.83726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.61 13.96 55.43 0.77 -23.83 15 2 C 0.13 3.77 5.47 -17.82 -0.10 3.67 15 3 Si 0.81 19.64 27.29 -169.99 -4.64 15.00 15 4 H -0.25 -5.51 7.11 56.52 0.40 -5.11 15 5 H -0.26 -6.32 7.11 56.52 0.40 -5.92 15 6 H -0.21 -5.40 5.57 56.52 0.31 -5.08 15 7 C -0.83 -22.38 9.94 30.60 0.30 -22.07 15 8 H 0.09 2.68 8.06 -52.49 -0.42 2.26 15 9 S 1.31 30.05 10.89 -107.50 -1.17 28.88 15 10 O -0.90 -25.95 15.64 -35.23 -0.55 -26.50 15 11 C -0.52 -9.13 4.98 36.01 0.18 -8.95 15 12 C 0.42 7.14 7.13 -30.72 -0.22 6.92 15 13 O -0.44 -8.60 15.86 5.57 0.09 -8.51 15 14 C -0.15 -2.07 5.87 -105.06 -0.62 -2.69 15 15 C -0.06 -0.65 9.47 -39.12 -0.37 -1.02 15 16 C -0.12 -1.26 9.81 -39.61 -0.39 -1.65 15 17 C -0.01 -0.13 6.33 -39.34 -0.25 -0.38 15 18 Cl -0.07 -0.64 28.95 -51.86 -1.50 -2.14 15 19 C -0.13 -1.27 9.81 -39.62 -0.39 -1.66 15 20 C -0.05 -0.63 9.60 -39.12 -0.38 -1.01 15 21 H 0.27 7.34 8.31 -40.82 -0.34 7.00 15 22 H 0.11 1.99 8.08 -51.93 -0.42 1.57 15 23 H 0.14 1.91 8.09 -51.92 -0.42 1.49 15 24 H 0.15 1.49 7.05 -52.48 -0.37 1.12 15 25 H 0.14 1.11 8.06 -52.49 -0.42 0.69 15 26 H 0.14 1.09 8.06 -52.49 -0.42 0.67 15 27 H 0.15 1.64 7.65 -52.49 -0.40 1.24 15 LS Contribution 274.11 15.07 4.13 4.13 Total: -1.00 -34.71 274.11 -7.19 -41.90 By element: Atomic # 1 Polarization: 2.01 SS G_CDS: -2.10 Total: -0.09 kcal Atomic # 6 Polarization: -26.61 SS G_CDS: -2.22 Total: -28.84 kcal Atomic # 7 Polarization: -24.61 SS G_CDS: 0.77 Total: -23.83 kcal Atomic # 8 Polarization: -34.54 SS G_CDS: -0.46 Total: -35.01 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -4.64 Total: 15.00 kcal Atomic # 16 Polarization: 30.05 SS G_CDS: -1.17 Total: 28.88 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -1.50 Total: -2.14 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -34.71 -7.19 -41.90 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526868407.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.693 kcal (2) G-P(sol) polarization free energy of solvation -34.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds