Wall clock time and date at job start Mon Mar 30 2020 06:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 S 1.76199 * 119.99836 * 180.27759 * 7 2 1 10 10 O 1.42091 * 103.00084 * 65.86804 * 9 7 2 11 11 C 1.81402 * 102.99699 * 179.72079 * 9 7 2 12 12 C 1.50699 * 109.46804 * 179.97438 * 11 9 7 13 13 O 1.21261 * 120.00172 * 0.02562 * 12 11 9 14 14 C 1.47093 * 120.00000 * 179.97438 * 12 11 9 15 15 C 1.39897 * 120.15421 * 359.72605 * 14 12 11 16 16 C 1.37816 * 119.83656 * 179.73866 * 15 14 12 17 17 C 1.38572 * 120.15914 * 0.53770 * 16 15 14 18 18 Cl 1.73596 * 119.83912 * 179.69323 * 17 16 15 19 19 C 1.38569 * 120.31556 * 359.71898 * 17 16 15 20 20 C 1.37806 * 120.16115 * 0.02562 * 19 17 16 21 21 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 22 22 H 1.08995 * 109.47263 * 299.99687 * 11 9 7 23 23 H 1.09002 * 109.47511 * 60.00068 * 11 9 7 24 24 H 1.08004 * 120.08477 * 359.97438 * 15 14 12 25 25 H 1.07998 * 119.92545 * 180.22919 * 16 15 14 26 26 H 1.07998 * 119.91373 * 180.02562 * 19 17 16 27 27 H 1.08002 * 120.08124 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 16 3.7665 -1.1941 0.0069 10 8 4.0809 -0.6317 1.2733 11 6 4.1745 -2.9616 0.0121 12 6 5.6719 -3.1314 0.0181 13 8 6.3927 -2.1563 0.0192 14 6 6.2591 -4.4801 0.0237 15 6 5.4306 -5.6073 0.0293 16 6 5.9878 -6.8678 0.0291 17 6 7.3651 -7.0202 0.0346 18 17 8.0580 -8.6118 0.0424 19 6 8.1918 -5.9081 0.0345 20 6 7.6487 -4.6416 0.0294 21 1 -0.4849 0.8400 0.0004 22 1 3.7519 -3.4294 0.9012 23 1 3.7593 -3.4331 -0.8787 24 1 4.3569 -5.4900 0.0299 25 1 5.3495 -7.7390 0.0296 26 1 9.2644 -6.0344 0.0384 27 1 8.2943 -3.7758 0.0298 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000526868407.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:05 Heat of formation + Delta-G solvation = -82.708066 kcal Electronic energy + Delta-G solvation = -15497.151189 eV Core-core repulsion = 12564.649057 eV Total energy + Delta-G solvation = -2932.502132 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 272.006 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.09858 -39.38250 -37.46985 -36.06830 -34.90357 -32.98189 -32.11394 -30.27992 -28.11375 -24.90544 -23.72685 -21.29424 -19.93745 -18.61588 -17.74695 -17.37819 -17.01399 -16.73763 -16.30496 -15.61838 -15.60916 -14.91366 -14.70059 -14.56895 -14.47671 -14.19638 -13.85136 -13.32776 -12.99272 -12.79615 -12.65427 -12.57511 -12.50452 -11.89980 -11.87069 -11.07266 -11.02786 -10.49690 -10.17407 -9.86875 -8.97234 -8.68788 -7.00705 -0.59601 0.21813 0.99227 1.08493 1.21711 1.23230 1.42589 1.57768 2.14648 2.59272 2.66535 2.73893 3.09097 3.66891 3.69142 3.82082 4.06475 4.17599 4.30432 4.42338 4.54299 4.69379 4.89925 5.03709 5.08142 5.24233 5.57336 5.60437 6.16229 6.34704 6.82917 8.43856 Molecular weight = 272.01amu Principal moments of inertia in cm(-1) A = 0.052364 B = 0.003908 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.590780 B = 7162.963673 C = 7608.174107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.082 3.918 3 Si 0.853 3.147 4 H -0.205 1.205 5 H -0.261 1.261 6 H -0.233 1.233 7 C -0.843 4.843 8 H 0.070 0.930 9 S 1.346 4.654 10 O -0.964 6.964 11 C -0.505 4.505 12 C 0.427 3.573 13 O -0.479 6.479 14 C -0.174 4.174 15 C -0.056 4.056 16 C -0.123 4.123 17 C -0.011 4.011 18 Cl -0.057 7.057 19 C -0.121 4.121 20 C -0.057 4.057 21 H 0.281 0.719 22 H 0.111 0.889 23 H 0.178 0.822 24 H 0.158 0.842 25 H 0.163 0.837 26 H 0.161 0.839 27 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.874 -14.979 -5.974 21.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.129 4.129 3 Si 0.671 3.329 4 H -0.127 1.127 5 H -0.185 1.185 6 H -0.155 1.155 7 C -0.983 4.983 8 H 0.088 0.912 9 S 1.548 4.452 10 O -0.958 6.958 11 C -0.639 4.639 12 C 0.307 3.693 13 O -0.357 6.357 14 C -0.176 4.176 15 C -0.074 4.074 16 C -0.141 4.141 17 C -0.038 4.038 18 Cl -0.027 7.027 19 C -0.140 4.140 20 C -0.075 4.075 21 H 0.091 0.909 22 H 0.130 0.870 23 H 0.195 0.805 24 H 0.175 0.825 25 H 0.180 0.820 26 H 0.179 0.821 27 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 15.779 -13.760 -5.947 21.764 hybrid contribution -1.489 -0.576 2.104 2.641 sum 14.290 -14.336 -3.843 20.604 Atomic orbital electron populations 1.70086 1.08164 1.29738 1.44212 1.25470 0.95260 1.02660 0.89485 0.87011 0.82257 0.80268 0.83352 1.12727 1.18471 1.15537 1.27937 1.11241 0.98488 1.60609 0.91165 1.68551 0.86176 0.83831 1.06610 1.92832 1.84048 1.70094 1.48873 1.28205 0.99067 1.26384 1.10279 1.21959 0.89400 0.88450 0.69535 1.90534 1.64333 1.42800 1.37991 1.20558 0.95213 0.94189 1.07689 1.21717 1.01417 0.90552 0.93745 1.21313 0.93165 0.98667 1.00941 1.21443 0.93954 0.86911 1.01487 1.98392 1.84627 1.23209 1.96515 1.21231 1.01563 0.89989 1.01191 1.21531 0.93754 0.98221 0.94009 0.90926 0.87025 0.80506 0.82452 0.81978 0.82118 0.83709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.50 13.96 21.45 0.30 -52.20 15 2 C 0.08 4.67 5.47 84.66 0.46 5.13 15 3 Si 0.85 40.44 27.29 68.60 1.87 42.31 15 4 H -0.21 -8.10 7.11 99.48 0.71 -7.40 15 5 H -0.26 -12.07 7.11 99.48 0.71 -11.37 15 6 H -0.23 -11.88 5.57 99.48 0.55 -11.33 15 7 C -0.84 -46.41 9.94 67.74 0.67 -45.73 15 8 H 0.07 4.06 8.06 -2.91 -0.02 4.04 15 9 S 1.35 61.71 10.89 -56.49 -0.62 61.10 15 10 O -0.96 -56.21 15.64 -148.98 -2.33 -58.54 15 11 C -0.50 -17.22 4.98 71.24 0.35 -16.87 15 12 C 0.43 13.94 7.13 28.01 0.20 14.14 15 13 O -0.48 -18.42 15.86 -2.97 -0.05 -18.47 15 14 C -0.17 -4.41 5.87 -20.15 -0.12 -4.53 15 15 C -0.06 -1.13 9.47 22.57 0.21 -0.92 15 16 C -0.12 -2.06 9.81 22.25 0.22 -1.85 15 17 C -0.01 -0.19 6.33 22.43 0.14 -0.05 15 18 Cl -0.06 -0.86 28.95 -2.72 -0.08 -0.94 15 19 C -0.12 -2.12 9.81 22.25 0.22 -1.90 15 20 C -0.06 -1.25 9.60 22.57 0.22 -1.03 15 21 H 0.28 15.22 8.31 -92.71 -0.77 14.45 15 22 H 0.11 3.90 8.08 -2.39 -0.02 3.88 15 23 H 0.18 4.53 8.09 -2.39 -0.02 4.51 15 24 H 0.16 2.74 7.05 -2.91 -0.02 2.72 15 25 H 0.16 1.95 8.06 -2.91 -0.02 1.93 15 26 H 0.16 2.02 8.06 -2.91 -0.02 1.99 15 27 H 0.15 3.12 7.65 -2.91 -0.02 3.10 15 Total: -1.00 -76.53 274.11 2.73 -73.81 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: 1.05 Total: 6.54 kcal Atomic # 6 Polarization: -56.19 SS G_CDS: 2.58 Total: -53.61 kcal Atomic # 7 Polarization: -52.50 SS G_CDS: 0.30 Total: -52.20 kcal Atomic # 8 Polarization: -74.63 SS G_CDS: -2.38 Total: -77.00 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 1.87 Total: 42.31 kcal Atomic # 16 Polarization: 61.71 SS G_CDS: -0.62 Total: 61.10 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -0.08 Total: -0.94 kcal Total: -76.53 2.73 -73.81 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526868407.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.902 kcal (2) G-P(sol) polarization free energy of solvation -76.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds